Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46918 * 2 1 4 4 C 1.53003 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47428 * 174.86241 * 4 3 2 6 6 C 1.34783 * 119.99669 * 264.53365 * 5 4 3 7 7 O 1.21282 * 119.99398 * 175.71917 * 6 5 4 8 8 C 1.50693 * 120.00245 * 355.71855 * 6 5 4 9 9 H 1.09002 * 109.47261 * 331.39249 * 8 6 5 10 10 N 1.46898 * 109.47150 * 211.39950 * 8 6 5 11 11 C 1.53000 * 109.47374 * 91.39951 * 8 6 5 12 12 C 1.52999 * 109.47173 * 184.81531 * 11 8 6 13 13 C 1.50695 * 109.47189 * 179.97438 * 12 11 8 14 14 H 1.08002 * 119.99902 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99956 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00490 * 0.02562 * 15 13 12 17 17 Si 1.86812 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46829 * 89.99978 * 17 15 13 19 19 H 1.48494 * 109.47108 * 209.99786 * 17 15 13 20 20 H 1.48497 * 109.46941 * 330.00245 * 17 15 13 21 21 C 1.46498 * 120.00313 * 84.53103 * 5 4 3 22 22 C 1.52993 * 117.50109 * 197.28244 * 21 5 4 23 23 C 1.52993 * 117.49878 * 128.61909 * 21 5 4 24 24 H 1.08988 * 109.47249 * 300.00025 * 1 2 3 25 25 H 1.09005 * 109.47048 * 60.00280 * 1 2 3 26 26 H 1.08993 * 109.46771 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47263 * 240.00506 * 2 1 3 28 28 H 1.08997 * 109.46971 * 120.00031 * 2 1 3 29 29 H 1.08997 * 109.47325 * 299.99814 * 3 2 1 30 30 H 1.09001 * 109.47455 * 60.00023 * 3 2 1 31 31 H 1.08999 * 109.47138 * 294.86325 * 4 3 2 32 32 H 1.09006 * 109.46678 * 54.86366 * 4 3 2 33 33 H 1.00899 * 111.00588 * 176.04964 * 10 8 6 34 34 H 1.00906 * 111.00112 * 299.99837 * 10 8 6 35 35 H 1.09007 * 109.46490 * 304.81048 * 11 8 6 36 36 H 1.08995 * 109.47578 * 64.81167 * 11 8 6 37 37 H 1.08997 * 109.47128 * 299.99963 * 12 11 8 38 38 H 1.09008 * 109.47280 * 59.99655 * 12 11 8 39 39 H 0.96999 * 120.00962 * 180.02562 * 16 15 13 40 40 H 1.09007 * 115.54707 * 342.95306 * 21 5 4 41 41 H 1.08998 * 117.50139 * 359.97438 * 22 21 5 42 42 H 1.08999 * 117.50035 * 145.02253 * 22 21 5 43 43 H 1.09002 * 117.50321 * 214.98235 * 23 21 5 44 44 H 1.09004 * 117.50067 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8182 -0.1230 6 6 4.3883 3.3098 -1.3339 7 8 4.7183 4.4714 -1.4472 8 6 4.3472 2.4163 -2.5466 9 1 4.5375 1.3861 -2.2456 10 7 5.3751 2.8440 -3.5050 11 6 2.9681 2.5097 -3.2024 12 6 2.8860 1.5141 -4.3613 13 6 1.5274 1.6056 -5.0069 14 1 0.7955 2.3037 -4.6281 15 6 1.2187 0.7981 -6.0809 16 7 2.1097 -0.0523 -6.5418 17 14 -0.4653 0.9120 -6.8816 18 1 -0.4288 1.9224 -7.9694 19 1 -0.8352 -0.4104 -7.4467 20 1 -1.4703 1.3149 -5.8654 21 6 4.1880 3.6595 1.0693 22 6 4.3048 5.1704 0.8585 23 6 5.5284 4.3614 1.2962 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.9330 1.0107 0.9333 32 1 3.9337 0.8510 -0.8396 33 1 5.4113 2.2216 -4.2984 34 1 5.2208 3.7967 -3.7997 35 1 2.1992 2.2746 -2.4664 36 1 2.8129 3.5203 -3.5800 37 1 3.6549 1.7490 -5.0973 38 1 3.0412 0.5034 -3.9838 39 1 1.8927 -0.6202 -7.2977 40 1 3.6452 3.3145 1.9493 41 1 4.2856 5.5385 -0.1672 42 1 3.8392 5.8195 1.6001 43 1 5.8673 4.4787 2.3255 44 1 6.3139 4.1969 0.5586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424100322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = -19.710710 kcal Electronic energy + Delta-G solvation = -21639.869220 eV Core-core repulsion = 18592.718004 eV Total energy + Delta-G solvation = -3047.151217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.38981 -36.80123 -36.25686 -34.89946 -33.30066 -32.76320 -29.91208 -28.60117 -26.71335 -24.31303 -23.61860 -22.29400 -22.13306 -21.13999 -20.31495 -18.60923 -17.19958 -16.53552 -16.32466 -15.27616 -14.98994 -14.87576 -14.45135 -14.12144 -14.05756 -13.71558 -13.26341 -13.07818 -13.01470 -12.80613 -12.35515 -12.07564 -11.90314 -11.59132 -11.44007 -11.16050 -11.09507 -10.94986 -10.81722 -10.74129 -10.66088 -10.50855 -10.26309 -9.86029 -9.69258 -9.25296 -8.93041 -8.43801 -8.31547 -8.16586 -6.08724 -4.11545 2.82730 2.97566 3.26716 3.33608 3.36477 4.01153 4.38895 4.58535 4.81402 4.92385 4.97816 5.11930 5.14473 5.19778 5.26191 5.27773 5.28793 5.42855 5.59292 5.64468 5.71114 5.76334 5.78304 5.84618 5.91131 6.02022 6.10447 6.16979 6.31998 6.37101 6.43316 6.47231 6.59544 6.88852 6.91998 7.39509 7.51775 7.58599 7.64456 7.87953 7.89391 8.31327 8.46417 8.94198 9.53384 11.02168 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.005542 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.584166 B = 5051.463499 C = 6056.509939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.142 4.142 4 C 0.107 3.893 5 N -0.587 5.587 6 C 0.531 3.469 7 O -0.533 6.533 8 C 0.072 3.928 9 H 0.096 0.904 10 N -0.832 5.832 11 C -0.140 4.140 12 C 0.027 3.973 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.072 3.928 22 C -0.198 4.198 23 C -0.191 4.191 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.354 0.646 34 H 0.346 0.654 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 1.869 15.644 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.181 4.181 4 C -0.015 4.015 5 N -0.318 5.318 6 C 0.321 3.679 7 O -0.410 6.410 8 C -0.043 4.043 9 H 0.113 0.887 10 N -0.365 5.365 11 C -0.179 4.179 12 C -0.010 4.010 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.033 4.033 22 C -0.235 4.235 23 C -0.229 4.229 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.980 2.201 16.030 16.453 hybrid contribution -1.814 -0.022 -1.028 2.085 sum 1.166 2.179 15.002 15.204 Atomic orbital electron populations 1.21742 0.95719 1.01572 1.01872 1.21435 0.96241 0.96057 1.02188 1.22172 0.94968 0.97783 1.03156 1.21772 0.94504 0.81898 1.03361 1.47337 1.65340 1.13427 1.05709 1.20940 0.74786 0.88298 0.83902 1.90390 1.47779 1.17637 1.85172 1.21599 0.93707 0.97900 0.91070 0.88675 1.58809 1.48900 1.08434 1.20343 1.22466 0.93550 1.01879 1.00041 1.19077 0.97309 0.93243 0.91414 1.21155 0.99114 1.21099 1.14593 0.92790 1.24985 0.97014 0.95240 0.96902 1.69940 1.34240 1.23448 1.25579 0.86622 0.84494 0.77395 0.79692 1.20632 1.21155 1.19878 1.21566 1.01002 0.91283 0.89422 1.24096 1.00453 0.92601 1.06386 1.23233 0.92491 1.05416 1.01786 0.93285 0.92097 0.92837 0.91076 0.92367 0.90377 0.92071 0.90638 0.89142 0.83027 0.84103 0.92050 0.92688 0.96525 0.96403 0.92905 0.85956 0.83590 0.89890 0.88999 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.36 5.93 -26.73 -0.16 -1.52 16 3 C -0.14 -1.69 5.50 -26.73 -0.15 -1.84 16 4 C 0.11 1.26 5.41 -4.04 -0.02 1.24 16 5 N -0.59 -8.16 2.84 -166.11 -0.47 -8.63 16 6 C 0.53 8.96 6.59 -10.99 -0.07 8.88 16 7 O -0.53 -10.09 12.26 5.56 0.07 -10.02 16 8 C 0.07 1.24 2.59 -68.87 -0.18 1.06 16 9 H 0.10 1.56 5.85 -51.93 -0.30 1.25 16 10 N -0.83 -14.39 9.04 -5.66 -0.05 -14.44 16 11 C -0.14 -2.76 4.78 -26.73 -0.13 -2.89 16 12 C 0.03 0.64 4.74 -27.89 -0.13 0.51 16 13 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.07 0.90 6.63 -67.94 -0.45 0.45 16 22 C -0.20 -2.65 9.64 -26.70 -0.26 -2.91 16 23 C -0.19 -2.37 9.90 -26.70 -0.26 -2.63 16 24 H 0.05 0.50 8.14 -51.94 -0.42 0.07 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.13 5.50 -51.93 -0.29 0.85 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.09 1.11 5.52 -51.93 -0.29 0.83 16 33 H 0.35 6.14 7.54 -39.29 -0.30 5.84 16 34 H 0.35 6.07 8.55 -39.29 -0.34 5.73 16 35 H 0.06 1.17 5.45 -51.92 -0.28 0.89 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.42 6.86 -51.93 -0.36 0.06 16 38 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.15 2.42 4.96 -53.41 -0.26 2.16 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.39 7.83 -51.93 -0.41 0.98 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -29.64 346.27 -8.81 -38.44 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -7.43 Total: 12.23 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.85 Total: -13.90 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.21 Total: -48.09 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.64 -8.81 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424100322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.732 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds