Wall clock time and date at job start Mon Mar 30 2020 00:58:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.46918 * 2 1
4 4 C 1.53003 * 109.47293 * 179.97438 * 3 2 1
5 5 N 1.46499 * 109.47428 * 174.86241 * 4 3 2
6 6 C 1.34783 * 119.99669 * 264.53365 * 5 4 3
7 7 O 1.21282 * 119.99398 * 175.71917 * 6 5 4
8 8 C 1.50693 * 120.00245 * 355.71855 * 6 5 4
9 9 H 1.09002 * 109.47261 * 331.39249 * 8 6 5
10 10 N 1.46898 * 109.47150 * 211.39950 * 8 6 5
11 11 C 1.53000 * 109.47374 * 91.39951 * 8 6 5
12 12 C 1.52999 * 109.47173 * 184.81531 * 11 8 6
13 13 C 1.50695 * 109.47189 * 179.97438 * 12 11 8
14 14 H 1.08002 * 119.99902 * 359.97438 * 13 12 11
15 15 C 1.37875 * 119.99956 * 179.97438 * 13 12 11
16 16 N 1.31508 * 120.00490 * 0.02562 * 15 13 12
17 17 Si 1.86812 * 119.99894 * 180.02562 * 15 13 12
18 18 H 1.48503 * 109.46829 * 89.99978 * 17 15 13
19 19 H 1.48494 * 109.47108 * 209.99786 * 17 15 13
20 20 H 1.48497 * 109.46941 * 330.00245 * 17 15 13
21 21 C 1.46498 * 120.00313 * 84.53103 * 5 4 3
22 22 C 1.52993 * 117.50109 * 197.28244 * 21 5 4
23 23 C 1.52993 * 117.49878 * 128.61909 * 21 5 4
24 24 H 1.08988 * 109.47249 * 300.00025 * 1 2 3
25 25 H 1.09005 * 109.47048 * 60.00280 * 1 2 3
26 26 H 1.08993 * 109.46771 * 179.97438 * 1 2 3
27 27 H 1.08999 * 109.47263 * 240.00506 * 2 1 3
28 28 H 1.08997 * 109.46971 * 120.00031 * 2 1 3
29 29 H 1.08997 * 109.47325 * 299.99814 * 3 2 1
30 30 H 1.09001 * 109.47455 * 60.00023 * 3 2 1
31 31 H 1.08999 * 109.47138 * 294.86325 * 4 3 2
32 32 H 1.09006 * 109.46678 * 54.86366 * 4 3 2
33 33 H 1.00899 * 111.00588 * 176.04964 * 10 8 6
34 34 H 1.00906 * 111.00112 * 299.99837 * 10 8 6
35 35 H 1.09007 * 109.46490 * 304.81048 * 11 8 6
36 36 H 1.08995 * 109.47578 * 64.81167 * 11 8 6
37 37 H 1.08997 * 109.47128 * 299.99963 * 12 11 8
38 38 H 1.09008 * 109.47280 * 59.99655 * 12 11 8
39 39 H 0.96999 * 120.00962 * 180.02562 * 16 15 13
40 40 H 1.09007 * 115.54707 * 342.95306 * 21 5 4
41 41 H 1.08998 * 117.50139 * 359.97438 * 22 21 5
42 42 H 1.08999 * 117.50035 * 145.02253 * 22 21 5
43 43 H 1.09002 * 117.50321 * 214.98235 * 23 21 5
44 44 H 1.09004 * 117.50067 * 359.97438 * 23 21 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4426 0.0006
5 7 4.0584 2.8182 -0.1230
6 6 4.3883 3.3098 -1.3339
7 8 4.7183 4.4714 -1.4472
8 6 4.3472 2.4163 -2.5466
9 1 4.5375 1.3861 -2.2456
10 7 5.3751 2.8440 -3.5050
11 6 2.9681 2.5097 -3.2024
12 6 2.8860 1.5141 -4.3613
13 6 1.5274 1.6056 -5.0069
14 1 0.7955 2.3037 -4.6281
15 6 1.2187 0.7981 -6.0809
16 7 2.1097 -0.0523 -6.5418
17 14 -0.4653 0.9120 -6.8816
18 1 -0.4288 1.9224 -7.9694
19 1 -0.8352 -0.4104 -7.4467
20 1 -1.4703 1.3149 -5.8654
21 6 4.1880 3.6595 1.0693
22 6 4.3048 5.1704 0.8585
23 6 5.5284 4.3614 1.2962
24 1 -0.3633 0.5138 0.8899
25 1 -0.3633 0.5138 -0.8901
26 1 -0.3632 -1.0276 -0.0005
27 1 1.8934 -0.5137 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 1.6767 1.9563 -0.8900
30 1 1.6767 1.9564 0.8900
31 1 3.9330 1.0107 0.9333
32 1 3.9337 0.8510 -0.8396
33 1 5.4113 2.2216 -4.2984
34 1 5.2208 3.7967 -3.7997
35 1 2.1992 2.2746 -2.4664
36 1 2.8129 3.5203 -3.5800
37 1 3.6549 1.7490 -5.0973
38 1 3.0412 0.5034 -3.9838
39 1 1.8927 -0.6202 -7.2977
40 1 3.6452 3.3145 1.9493
41 1 4.2856 5.5385 -0.1672
42 1 3.8392 5.8195 1.6001
43 1 5.8673 4.4787 2.3255
44 1 6.3139 4.1969 0.5586
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424100322.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:58:30
Heat of formation + Delta-G solvation = -37.803390 kcal
Electronic energy + Delta-G solvation = -21640.653778 eV
Core-core repulsion = 18592.718004 eV
Total energy + Delta-G solvation = -3047.935774 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.62046 -38.05420 -37.44061 -36.23199 -34.85720 -34.21679 -31.72102 -29.60619
-28.34741 -26.03400 -24.60788 -23.54113 -23.27127 -22.19392 -21.81537 -19.93471
-18.60451 -18.15632 -17.65598 -16.62583 -16.36947 -16.11527 -16.03667 -15.57379
-15.10223 -14.95646 -14.75004 -14.42796 -14.13032 -14.00100 -13.95275 -13.49172
-13.31565 -12.93851 -12.74993 -12.65015 -12.53343 -12.40411 -12.12544 -11.87694
-11.79519 -11.74425 -11.59917 -11.30678 -11.24226 -11.21025 -10.55603 -10.28919
-9.64077 -9.41580 -8.21480 -6.31441 1.38312 1.39022 1.48905 1.51492
1.86344 2.39224 3.01562 3.12227 3.38955 3.71370 3.81670 3.97608
4.03418 4.08876 4.15020 4.17123 4.23462 4.28826 4.41114 4.53252
4.66092 4.72262 4.76520 4.82962 4.84173 4.92436 4.99854 5.03961
5.10290 5.16027 5.32413 5.38746 5.43478 5.44987 5.55553 5.65356
5.80631 5.82266 6.02605 6.21127 6.35294 6.43498 6.82806 7.18948
7.37465 8.89269
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.017468 B = 0.005542 C = 0.004622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1602.584166 B = 5051.463499 C = 6056.509939
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.119 4.119
3 C -0.136 4.136
4 C 0.104 3.896
5 N -0.581 5.581
6 C 0.526 3.474
7 O -0.558 6.558
8 C 0.078 3.922
9 H 0.106 0.894
10 N -0.830 5.830
11 C -0.122 4.122
12 C 0.036 3.964
13 C -0.542 4.542
14 H 0.051 0.949
15 C 0.010 3.990
16 N -0.925 5.925
17 Si 0.954 3.046
18 H -0.276 1.276
19 H -0.280 1.280
20 H -0.266 1.266
21 C 0.071 3.929
22 C -0.211 4.211
23 C -0.183 4.183
24 H 0.065 0.935
25 H 0.035 0.965
26 H 0.059 0.941
27 H 0.051 0.949
28 H 0.086 0.914
29 H 0.045 0.955
30 H 0.078 0.922
31 H 0.111 0.889
32 H 0.081 0.919
33 H 0.353 0.647
34 H 0.343 0.657
35 H 0.067 0.933
36 H 0.038 0.962
37 H 0.000 1.000
38 H 0.003 0.997
39 H 0.264 0.736
40 H 0.160 0.840
41 H 0.111 0.889
42 H 0.106 0.894
43 H 0.123 0.877
44 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.532 1.505 17.972 18.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.157 4.157
3 C -0.174 4.174
4 C -0.018 4.018
5 N -0.311 5.311
6 C 0.315 3.685
7 O -0.438 6.438
8 C -0.037 4.037
9 H 0.124 0.876
10 N -0.362 5.362
11 C -0.162 4.162
12 C -0.002 4.002
13 C -0.580 4.580
14 H 0.069 0.931
15 C -0.189 4.189
16 N -0.565 5.565
17 Si 0.779 3.221
18 H -0.202 1.202
19 H -0.205 1.205
20 H -0.191 1.191
21 C -0.032 4.032
22 C -0.248 4.248
23 C -0.221 4.221
24 H 0.084 0.916
25 H 0.054 0.946
26 H 0.078 0.922
27 H 0.070 0.930
28 H 0.104 0.896
29 H 0.064 0.936
30 H 0.097 0.903
31 H 0.129 0.871
32 H 0.099 0.901
33 H 0.168 0.832
34 H 0.156 0.844
35 H 0.086 0.914
36 H 0.057 0.943
37 H 0.019 0.981
38 H 0.021 0.979
39 H 0.073 0.927
40 H 0.177 0.823
41 H 0.129 0.871
42 H 0.124 0.876
43 H 0.141 0.859
44 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 2.260 1.827 18.384 18.613
hybrid contribution -1.575 0.092 -1.728 2.340
sum 0.684 1.919 16.656 16.780
Atomic orbital electron populations
1.21753 0.95968 1.01877 1.01420 1.21420 0.96009 0.95644 1.02585
1.22087 0.94950 0.98010 1.02344 1.21957 0.94373 0.80631 1.04798
1.47395 1.64002 1.14414 1.05286 1.20782 0.75255 0.87748 0.84745
1.90424 1.49121 1.18423 1.85786 1.21522 0.91874 0.98883 0.91433
0.87647 1.58826 1.48770 1.08248 1.20318 1.22198 0.95701 0.99462
0.98790 1.18911 0.95570 0.93433 0.92249 1.21547 1.00328 1.21023
1.15073 0.93095 1.25789 1.00726 0.94860 0.97480 1.70046 1.36132
1.24182 1.26122 0.85613 0.80105 0.77590 0.78771 1.20162 1.20495
1.19087 1.21971 1.01360 0.90434 0.89480 1.23959 1.01961 0.93754
1.05157 1.23219 0.91526 1.04758 1.02610 0.91639 0.94618 0.92201
0.93033 0.89562 0.93607 0.90340 0.87106 0.90090 0.83245 0.84366
0.91437 0.94273 0.98138 0.97910 0.92718 0.82260 0.87085 0.87556
0.85912 0.91440
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.28 9.91 71.98 0.71 -2.57 16
2 C -0.12 -2.44 5.93 30.59 0.18 -2.26 16
3 C -0.14 -2.96 5.50 30.59 0.17 -2.79 16
4 C 0.10 2.19 5.41 86.38 0.47 2.66 16
5 N -0.58 -15.18 2.84 -797.84 -2.27 -17.45 16
6 C 0.53 17.69 6.59 87.65 0.58 18.27 16
7 O -0.56 -21.53 12.26 -3.04 -0.04 -21.57 16
8 C 0.08 2.71 2.59 44.17 0.11 2.83 16
9 H 0.11 3.46 5.85 -2.39 -0.01 3.45 16
10 N -0.83 -29.45 9.04 -171.81 -1.55 -31.00 16
11 C -0.12 -4.95 4.78 30.59 0.15 -4.80 16
12 C 0.04 1.76 4.74 29.85 0.14 1.90 16
13 C -0.54 -29.93 9.11 25.60 0.23 -29.69 16
14 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16
15 C 0.01 0.56 5.46 84.66 0.46 1.03 16
16 N -0.92 -54.07 13.29 21.45 0.28 -53.79 16
17 Si 0.95 43.49 29.54 68.60 2.03 45.51 16
18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16
20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16
21 C 0.07 1.57 6.63 44.99 0.30 1.87 16
22 C -0.21 -5.31 9.64 30.62 0.30 -5.02 16
23 C -0.18 -4.14 9.90 30.62 0.30 -3.83 16
24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
25 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16
26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
29 H 0.05 1.31 5.50 -2.39 -0.01 1.29 16
30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.11 1.63 8.11 -2.39 -0.02 1.61 16
32 H 0.08 1.88 5.52 -2.38 -0.01 1.87 16
33 H 0.35 12.63 7.54 -89.69 -0.68 11.96 16
34 H 0.34 12.49 8.55 -89.69 -0.77 11.72 16
35 H 0.07 2.65 5.45 -2.38 -0.01 2.64 16
36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16
37 H 0.00 0.02 6.86 -2.39 -0.02 0.00 16
38 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16
39 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16
40 H 0.16 2.37 8.14 -2.38 -0.02 2.35 16
41 H 0.11 3.72 4.96 -25.90 -0.13 3.59 16
42 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16
43 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16
44 H 0.07 1.92 7.83 -2.39 -0.02 1.90 16
Total: -1.00 -64.99 346.27 1.99 -63.00
By element:
Atomic # 1 Polarization: 38.27 SS G_CDS: -0.57 Total: 37.71 kcal
Atomic # 6 Polarization: -26.51 SS G_CDS: 4.10 Total: -22.41 kcal
Atomic # 7 Polarization: -98.70 SS G_CDS: -3.54 Total: -102.24 kcal
Atomic # 8 Polarization: -21.53 SS G_CDS: -0.04 Total: -21.57 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal
Total: -64.99 1.99 -63.00 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424100322.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal
(2) G-P(sol) polarization free energy of solvation -64.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.794 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds