Wall clock time and date at job start Mon Mar 30 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46918 * 2 1 4 4 C 1.53003 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47428 * 174.86241 * 4 3 2 6 6 C 1.34783 * 119.99669 * 264.53365 * 5 4 3 7 7 O 1.21282 * 119.99398 * 175.71917 * 6 5 4 8 8 C 1.50693 * 120.00245 * 355.71855 * 6 5 4 9 9 H 1.09002 * 109.47261 * 331.39249 * 8 6 5 10 10 N 1.46898 * 109.47150 * 211.39950 * 8 6 5 11 11 C 1.53000 * 109.47374 * 91.39951 * 8 6 5 12 12 C 1.52999 * 109.47173 * 184.81531 * 11 8 6 13 13 C 1.50695 * 109.47189 * 179.97438 * 12 11 8 14 14 H 1.08002 * 119.99902 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99956 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00490 * 0.02562 * 15 13 12 17 17 Si 1.86812 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46829 * 89.99978 * 17 15 13 19 19 H 1.48494 * 109.47108 * 209.99786 * 17 15 13 20 20 H 1.48497 * 109.46941 * 330.00245 * 17 15 13 21 21 C 1.46498 * 120.00313 * 84.53103 * 5 4 3 22 22 C 1.52993 * 117.50109 * 197.28244 * 21 5 4 23 23 C 1.52993 * 117.49878 * 128.61909 * 21 5 4 24 24 H 1.08988 * 109.47249 * 300.00025 * 1 2 3 25 25 H 1.09005 * 109.47048 * 60.00280 * 1 2 3 26 26 H 1.08993 * 109.46771 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47263 * 240.00506 * 2 1 3 28 28 H 1.08997 * 109.46971 * 120.00031 * 2 1 3 29 29 H 1.08997 * 109.47325 * 299.99814 * 3 2 1 30 30 H 1.09001 * 109.47455 * 60.00023 * 3 2 1 31 31 H 1.08999 * 109.47138 * 294.86325 * 4 3 2 32 32 H 1.09006 * 109.46678 * 54.86366 * 4 3 2 33 33 H 1.00899 * 111.00588 * 176.04964 * 10 8 6 34 34 H 1.00906 * 111.00112 * 299.99837 * 10 8 6 35 35 H 1.09007 * 109.46490 * 304.81048 * 11 8 6 36 36 H 1.08995 * 109.47578 * 64.81167 * 11 8 6 37 37 H 1.08997 * 109.47128 * 299.99963 * 12 11 8 38 38 H 1.09008 * 109.47280 * 59.99655 * 12 11 8 39 39 H 0.96999 * 120.00962 * 180.02562 * 16 15 13 40 40 H 1.09007 * 115.54707 * 342.95306 * 21 5 4 41 41 H 1.08998 * 117.50139 * 359.97438 * 22 21 5 42 42 H 1.08999 * 117.50035 * 145.02253 * 22 21 5 43 43 H 1.09002 * 117.50321 * 214.98235 * 23 21 5 44 44 H 1.09004 * 117.50067 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8182 -0.1230 6 6 4.3883 3.3098 -1.3339 7 8 4.7183 4.4714 -1.4472 8 6 4.3472 2.4163 -2.5466 9 1 4.5375 1.3861 -2.2456 10 7 5.3751 2.8440 -3.5050 11 6 2.9681 2.5097 -3.2024 12 6 2.8860 1.5141 -4.3613 13 6 1.5274 1.6056 -5.0069 14 1 0.7955 2.3037 -4.6281 15 6 1.2187 0.7981 -6.0809 16 7 2.1097 -0.0523 -6.5418 17 14 -0.4653 0.9120 -6.8816 18 1 -0.4288 1.9224 -7.9694 19 1 -0.8352 -0.4104 -7.4467 20 1 -1.4703 1.3149 -5.8654 21 6 4.1880 3.6595 1.0693 22 6 4.3048 5.1704 0.8585 23 6 5.5284 4.3614 1.2962 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.9330 1.0107 0.9333 32 1 3.9337 0.8510 -0.8396 33 1 5.4113 2.2216 -4.2984 34 1 5.2208 3.7967 -3.7997 35 1 2.1992 2.2746 -2.4664 36 1 2.8129 3.5203 -3.5800 37 1 3.6549 1.7490 -5.0973 38 1 3.0412 0.5034 -3.9838 39 1 1.8927 -0.6202 -7.2977 40 1 3.6452 3.3145 1.9493 41 1 4.2856 5.5385 -0.1672 42 1 3.8392 5.8195 1.6001 43 1 5.8673 4.4787 2.3255 44 1 6.3139 4.1969 0.5586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424100322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:30 Heat of formation + Delta-G solvation = -37.803390 kcal Electronic energy + Delta-G solvation = -21640.653778 eV Core-core repulsion = 18592.718004 eV Total energy + Delta-G solvation = -3047.935774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62046 -38.05420 -37.44061 -36.23199 -34.85720 -34.21679 -31.72102 -29.60619 -28.34741 -26.03400 -24.60788 -23.54113 -23.27127 -22.19392 -21.81537 -19.93471 -18.60451 -18.15632 -17.65598 -16.62583 -16.36947 -16.11527 -16.03667 -15.57379 -15.10223 -14.95646 -14.75004 -14.42796 -14.13032 -14.00100 -13.95275 -13.49172 -13.31565 -12.93851 -12.74993 -12.65015 -12.53343 -12.40411 -12.12544 -11.87694 -11.79519 -11.74425 -11.59917 -11.30678 -11.24226 -11.21025 -10.55603 -10.28919 -9.64077 -9.41580 -8.21480 -6.31441 1.38312 1.39022 1.48905 1.51492 1.86344 2.39224 3.01562 3.12227 3.38955 3.71370 3.81670 3.97608 4.03418 4.08876 4.15020 4.17123 4.23462 4.28826 4.41114 4.53252 4.66092 4.72262 4.76520 4.82962 4.84173 4.92436 4.99854 5.03961 5.10290 5.16027 5.32413 5.38746 5.43478 5.44987 5.55553 5.65356 5.80631 5.82266 6.02605 6.21127 6.35294 6.43498 6.82806 7.18948 7.37465 8.89269 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.005542 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.584166 B = 5051.463499 C = 6056.509939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.136 4.136 4 C 0.104 3.896 5 N -0.581 5.581 6 C 0.526 3.474 7 O -0.558 6.558 8 C 0.078 3.922 9 H 0.106 0.894 10 N -0.830 5.830 11 C -0.122 4.122 12 C 0.036 3.964 13 C -0.542 4.542 14 H 0.051 0.949 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.266 1.266 21 C 0.071 3.929 22 C -0.211 4.211 23 C -0.183 4.183 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.353 0.647 34 H 0.343 0.657 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.000 1.000 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.160 0.840 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 1.505 17.972 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.174 4.174 4 C -0.018 4.018 5 N -0.311 5.311 6 C 0.315 3.685 7 O -0.438 6.438 8 C -0.037 4.037 9 H 0.124 0.876 10 N -0.362 5.362 11 C -0.162 4.162 12 C -0.002 4.002 13 C -0.580 4.580 14 H 0.069 0.931 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.779 3.221 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.032 4.032 22 C -0.248 4.248 23 C -0.221 4.221 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.177 0.823 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.141 0.859 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.260 1.827 18.384 18.613 hybrid contribution -1.575 0.092 -1.728 2.340 sum 0.684 1.919 16.656 16.780 Atomic orbital electron populations 1.21753 0.95968 1.01877 1.01420 1.21420 0.96009 0.95644 1.02585 1.22087 0.94950 0.98010 1.02344 1.21957 0.94373 0.80631 1.04798 1.47395 1.64002 1.14414 1.05286 1.20782 0.75255 0.87748 0.84745 1.90424 1.49121 1.18423 1.85786 1.21522 0.91874 0.98883 0.91433 0.87647 1.58826 1.48770 1.08248 1.20318 1.22198 0.95701 0.99462 0.98790 1.18911 0.95570 0.93433 0.92249 1.21547 1.00328 1.21023 1.15073 0.93095 1.25789 1.00726 0.94860 0.97480 1.70046 1.36132 1.24182 1.26122 0.85613 0.80105 0.77590 0.78771 1.20162 1.20495 1.19087 1.21971 1.01360 0.90434 0.89480 1.23959 1.01961 0.93754 1.05157 1.23219 0.91526 1.04758 1.02610 0.91639 0.94618 0.92201 0.93033 0.89562 0.93607 0.90340 0.87106 0.90090 0.83245 0.84366 0.91437 0.94273 0.98138 0.97910 0.92718 0.82260 0.87085 0.87556 0.85912 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.91 71.98 0.71 -2.57 16 2 C -0.12 -2.44 5.93 30.59 0.18 -2.26 16 3 C -0.14 -2.96 5.50 30.59 0.17 -2.79 16 4 C 0.10 2.19 5.41 86.38 0.47 2.66 16 5 N -0.58 -15.18 2.84 -797.84 -2.27 -17.45 16 6 C 0.53 17.69 6.59 87.65 0.58 18.27 16 7 O -0.56 -21.53 12.26 -3.04 -0.04 -21.57 16 8 C 0.08 2.71 2.59 44.17 0.11 2.83 16 9 H 0.11 3.46 5.85 -2.39 -0.01 3.45 16 10 N -0.83 -29.45 9.04 -171.81 -1.55 -31.00 16 11 C -0.12 -4.95 4.78 30.59 0.15 -4.80 16 12 C 0.04 1.76 4.74 29.85 0.14 1.90 16 13 C -0.54 -29.93 9.11 25.60 0.23 -29.69 16 14 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 15 C 0.01 0.56 5.46 84.66 0.46 1.03 16 16 N -0.92 -54.07 13.29 21.45 0.28 -53.79 16 17 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 C 0.07 1.57 6.63 44.99 0.30 1.87 16 22 C -0.21 -5.31 9.64 30.62 0.30 -5.02 16 23 C -0.18 -4.14 9.90 30.62 0.30 -3.83 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.31 5.50 -2.39 -0.01 1.29 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.63 8.11 -2.39 -0.02 1.61 16 32 H 0.08 1.88 5.52 -2.38 -0.01 1.87 16 33 H 0.35 12.63 7.54 -89.69 -0.68 11.96 16 34 H 0.34 12.49 8.55 -89.69 -0.77 11.72 16 35 H 0.07 2.65 5.45 -2.38 -0.01 2.64 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.00 0.02 6.86 -2.39 -0.02 0.00 16 38 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 39 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.16 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.11 3.72 4.96 -25.90 -0.13 3.59 16 42 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 43 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 1.92 7.83 -2.39 -0.02 1.90 16 Total: -1.00 -64.99 346.27 1.99 -63.00 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.57 Total: 37.71 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 4.10 Total: -22.41 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -3.54 Total: -102.24 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.04 Total: -21.57 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.99 1.99 -63.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424100322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds