Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46807 * 2 1 4 4 C 1.53007 * 109.46928 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46854 * 185.72634 * 4 3 2 6 6 C 1.34779 * 119.99563 * 97.66602 * 5 4 3 7 7 O 1.21284 * 120.00186 * 183.98953 * 6 5 4 8 8 C 1.50700 * 120.00154 * 3.98462 * 6 5 4 9 9 H 1.09000 * 109.47087 * 28.73840 * 8 6 5 10 10 N 1.46898 * 109.47242 * 148.74158 * 8 6 5 11 11 C 1.52998 * 109.47406 * 268.73876 * 8 6 5 12 12 C 1.52999 * 109.47327 * 176.60895 * 11 8 6 13 13 C 1.50697 * 109.47163 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00130 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99911 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00388 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47205 * 59.99979 * 17 15 13 19 19 H 1.48501 * 109.46996 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47434 * 299.99823 * 17 15 13 21 21 C 1.46496 * 120.00724 * 277.66466 * 5 4 3 22 22 C 1.52998 * 117.50240 * 197.79030 * 21 5 4 23 23 C 1.52998 * 117.50366 * 129.12392 * 21 5 4 24 24 H 1.08998 * 109.47685 * 300.00496 * 1 2 3 25 25 H 1.08999 * 109.47503 * 60.00736 * 1 2 3 26 26 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47685 * 239.99504 * 2 1 3 28 28 H 1.09005 * 109.47111 * 119.99084 * 2 1 3 29 29 H 1.08997 * 109.47078 * 299.99165 * 3 2 1 30 30 H 1.08996 * 109.47306 * 59.99869 * 3 2 1 31 31 H 1.08999 * 109.47049 * 305.73368 * 4 3 2 32 32 H 1.09006 * 109.46926 * 65.72931 * 4 3 2 33 33 H 1.00896 * 111.00100 * 59.99650 * 10 8 6 34 34 H 1.00903 * 111.00558 * 183.95843 * 10 8 6 35 35 H 1.09000 * 109.47102 * 296.61599 * 11 8 6 36 36 H 1.09005 * 109.46890 * 56.60779 * 11 8 6 37 37 H 1.08998 * 109.46889 * 300.00214 * 12 11 8 38 38 H 1.08999 * 109.47015 * 60.00428 * 12 11 8 39 39 H 0.96998 * 120.00456 * 179.97438 * 16 15 13 40 40 H 1.09002 * 115.54466 * 343.44785 * 21 5 4 41 41 H 1.09000 * 117.49744 * 359.97438 * 22 21 5 42 42 H 1.08994 * 117.50510 * 145.01863 * 22 21 5 43 43 H 1.08994 * 117.49740 * 214.98375 * 23 21 5 44 44 H 1.08997 * 117.49484 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8169 0.1385 6 6 4.4290 3.2822 1.3478 7 8 4.7643 4.4407 1.4752 8 6 4.4269 2.3628 2.5419 9 1 4.6078 1.3395 2.2129 10 7 5.4846 2.7710 3.4760 11 6 3.0694 2.4406 3.2432 12 6 3.0376 1.4453 4.4048 13 6 1.7002 1.5215 5.0951 14 1 0.9482 2.2111 4.7410 15 6 1.4369 0.7115 6.1794 16 7 2.3527 -0.1280 6.6109 17 14 -0.2206 0.8064 7.0355 18 1 -1.2971 0.4726 6.0685 19 1 -0.2515 -0.1597 8.1628 20 1 -0.4313 2.1814 7.5554 21 6 4.1433 3.6856 -1.0381 22 6 5.0257 4.9312 -0.9343 23 6 3.5013 5.0710 -0.9414 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8899 31 1 3.9329 0.8425 0.8351 32 1 3.9337 1.0200 -0.9360 33 1 5.3394 3.7169 3.7957 34 1 5.5464 2.1317 4.2543 35 1 2.9149 3.4498 3.6250 36 1 2.2792 2.1959 2.5333 37 1 3.1920 0.4362 4.0229 38 1 3.8277 1.6900 5.1146 39 1 2.1676 -0.6975 7.3739 40 1 4.1013 3.1775 -2.0015 41 1 5.5425 5.1045 0.0096 42 1 5.5637 5.2429 -1.8295 43 1 3.0372 5.4745 -1.8413 44 1 3.0152 5.3360 -0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424100324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -22.378267 kcal Electronic energy + Delta-G solvation = -21652.891111 eV Core-core repulsion = 18605.624220 eV Total energy + Delta-G solvation = -3047.266891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.38114 -36.80508 -36.23005 -34.89962 -33.30728 -32.75766 -29.89569 -28.61188 -26.72018 -24.30532 -23.59680 -22.30745 -22.12233 -21.14208 -20.30694 -18.59008 -17.18094 -16.52154 -16.30278 -15.32880 -14.99761 -14.86914 -14.50050 -14.11158 -13.94740 -13.75018 -13.28762 -13.02953 -12.95097 -12.82307 -12.37101 -12.12003 -11.90017 -11.66452 -11.25601 -11.15039 -11.09817 -10.94409 -10.85957 -10.78259 -10.66197 -10.51205 -10.25671 -9.87835 -9.68858 -9.26150 -9.02269 -8.43578 -8.32461 -8.13984 -6.08489 -4.11385 2.83159 2.98082 3.28133 3.33100 3.35609 4.00149 4.38986 4.61813 4.80948 4.91392 4.97937 5.11809 5.13698 5.19743 5.26632 5.27857 5.28587 5.42198 5.59700 5.64996 5.70924 5.76734 5.79420 5.84815 5.89922 6.02252 6.11086 6.17939 6.30825 6.36302 6.44202 6.46488 6.58307 6.84508 6.91231 7.39878 7.51486 7.58746 7.64578 7.88234 7.89811 8.31426 8.44963 8.94055 9.53429 11.02391 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.005609 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.238452 B = 4990.865184 C = 5968.769331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.107 3.893 5 N -0.588 5.588 6 C 0.530 3.470 7 O -0.533 6.533 8 C 0.072 3.928 9 H 0.095 0.905 10 N -0.832 5.832 11 C -0.139 4.139 12 C 0.027 3.973 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.073 3.927 22 C -0.193 4.193 23 C -0.188 4.188 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.346 0.654 34 H 0.355 0.645 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.262 0.738 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 2.069 -15.902 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.178 4.178 4 C -0.015 4.015 5 N -0.319 5.319 6 C 0.319 3.681 7 O -0.410 6.410 8 C -0.043 4.043 9 H 0.113 0.887 10 N -0.365 5.365 11 C -0.178 4.178 12 C -0.010 4.010 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.032 4.032 22 C -0.230 4.230 23 C -0.227 4.227 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.359 2.413 -16.294 16.640 hybrid contribution -1.879 -0.002 1.115 2.185 sum 0.480 2.411 -15.178 15.376 Atomic orbital electron populations 1.21741 0.95745 1.01560 1.01837 1.21444 0.96216 0.96116 1.02202 1.22128 0.94957 0.97662 1.03094 1.21781 0.94559 0.81960 1.03247 1.47363 1.64745 1.13281 1.06502 1.20915 0.74961 0.88547 0.83635 1.90471 1.47798 1.18329 1.84361 1.21593 0.93519 0.97720 0.91427 0.88689 1.58807 1.46982 1.08433 1.22264 1.22437 0.93839 1.01853 0.99713 1.19073 0.97358 0.93236 0.91368 1.21120 0.99699 1.21513 1.13728 0.92851 1.24983 0.96866 0.95266 0.97006 1.69932 1.33693 1.23719 1.25866 0.86676 0.84364 0.77905 0.79192 1.20215 1.21210 1.20244 1.21589 1.06469 0.85970 0.89145 1.23814 0.94109 0.99789 1.05280 1.23221 0.96453 0.99936 1.03069 0.92181 0.93258 0.92836 0.92339 0.91092 0.91961 0.90620 0.89082 0.90776 0.84104 0.83003 0.92739 0.92159 0.96407 0.96501 0.92843 0.85873 0.84553 0.89689 0.89083 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.36 5.93 -26.73 -0.16 -1.52 16 3 C -0.14 -1.66 5.47 -26.73 -0.15 -1.80 16 4 C 0.11 1.25 5.45 -4.04 -0.02 1.23 16 5 N -0.59 -8.14 2.85 -166.11 -0.47 -8.61 16 6 C 0.53 8.94 6.62 -10.98 -0.07 8.87 16 7 O -0.53 -10.12 12.09 5.55 0.07 -10.05 16 8 C 0.07 1.24 2.59 -68.87 -0.18 1.06 16 9 H 0.10 1.55 5.85 -51.93 -0.30 1.25 16 10 N -0.83 -14.44 9.02 -5.66 -0.05 -14.49 16 11 C -0.14 -2.75 4.79 -26.73 -0.13 -2.88 16 12 C 0.03 0.64 4.71 -27.88 -0.13 0.51 16 13 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 14 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.07 0.90 6.62 -67.93 -0.45 0.45 16 22 C -0.19 -2.53 9.64 -26.69 -0.26 -2.78 16 23 C -0.19 -2.40 9.87 -26.69 -0.26 -2.66 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.09 5.79 -51.93 -0.30 0.79 16 31 H 0.09 1.12 5.46 -51.93 -0.28 0.84 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.35 6.11 8.55 -39.29 -0.34 5.77 16 34 H 0.35 6.17 7.50 -39.29 -0.29 5.88 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.16 5.72 -51.93 -0.30 0.86 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.42 6.83 -51.93 -0.35 0.07 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.14 2.22 5.25 -52.06 -0.27 1.95 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.48 7.55 -51.93 -0.39 1.09 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -29.75 346.50 -8.82 -38.57 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.45 Total: 12.08 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.85 Total: -13.81 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.21 Total: -48.17 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.75 -8.82 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424100324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.189 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds