Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46807 * 2 1 4 4 C 1.53007 * 109.46928 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46854 * 185.72634 * 4 3 2 6 6 C 1.34779 * 119.99563 * 97.66602 * 5 4 3 7 7 O 1.21284 * 120.00186 * 183.98953 * 6 5 4 8 8 C 1.50700 * 120.00154 * 3.98462 * 6 5 4 9 9 H 1.09000 * 109.47087 * 28.73840 * 8 6 5 10 10 N 1.46898 * 109.47242 * 148.74158 * 8 6 5 11 11 C 1.52998 * 109.47406 * 268.73876 * 8 6 5 12 12 C 1.52999 * 109.47327 * 176.60895 * 11 8 6 13 13 C 1.50697 * 109.47163 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00130 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99911 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00388 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47205 * 59.99979 * 17 15 13 19 19 H 1.48501 * 109.46996 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47434 * 299.99823 * 17 15 13 21 21 C 1.46496 * 120.00724 * 277.66466 * 5 4 3 22 22 C 1.52998 * 117.50240 * 197.79030 * 21 5 4 23 23 C 1.52998 * 117.50366 * 129.12392 * 21 5 4 24 24 H 1.08998 * 109.47685 * 300.00496 * 1 2 3 25 25 H 1.08999 * 109.47503 * 60.00736 * 1 2 3 26 26 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47685 * 239.99504 * 2 1 3 28 28 H 1.09005 * 109.47111 * 119.99084 * 2 1 3 29 29 H 1.08997 * 109.47078 * 299.99165 * 3 2 1 30 30 H 1.08996 * 109.47306 * 59.99869 * 3 2 1 31 31 H 1.08999 * 109.47049 * 305.73368 * 4 3 2 32 32 H 1.09006 * 109.46926 * 65.72931 * 4 3 2 33 33 H 1.00896 * 111.00100 * 59.99650 * 10 8 6 34 34 H 1.00903 * 111.00558 * 183.95843 * 10 8 6 35 35 H 1.09000 * 109.47102 * 296.61599 * 11 8 6 36 36 H 1.09005 * 109.46890 * 56.60779 * 11 8 6 37 37 H 1.08998 * 109.46889 * 300.00214 * 12 11 8 38 38 H 1.08999 * 109.47015 * 60.00428 * 12 11 8 39 39 H 0.96998 * 120.00456 * 179.97438 * 16 15 13 40 40 H 1.09002 * 115.54466 * 343.44785 * 21 5 4 41 41 H 1.09000 * 117.49744 * 359.97438 * 22 21 5 42 42 H 1.08994 * 117.50510 * 145.01863 * 22 21 5 43 43 H 1.08994 * 117.49740 * 214.98375 * 23 21 5 44 44 H 1.08997 * 117.49484 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8169 0.1385 6 6 4.4290 3.2822 1.3478 7 8 4.7643 4.4407 1.4752 8 6 4.4269 2.3628 2.5419 9 1 4.6078 1.3395 2.2129 10 7 5.4846 2.7710 3.4760 11 6 3.0694 2.4406 3.2432 12 6 3.0376 1.4453 4.4048 13 6 1.7002 1.5215 5.0951 14 1 0.9482 2.2111 4.7410 15 6 1.4369 0.7115 6.1794 16 7 2.3527 -0.1280 6.6109 17 14 -0.2206 0.8064 7.0355 18 1 -1.2971 0.4726 6.0685 19 1 -0.2515 -0.1597 8.1628 20 1 -0.4313 2.1814 7.5554 21 6 4.1433 3.6856 -1.0381 22 6 5.0257 4.9312 -0.9343 23 6 3.5013 5.0710 -0.9414 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8899 31 1 3.9329 0.8425 0.8351 32 1 3.9337 1.0200 -0.9360 33 1 5.3394 3.7169 3.7957 34 1 5.5464 2.1317 4.2543 35 1 2.9149 3.4498 3.6250 36 1 2.2792 2.1959 2.5333 37 1 3.1920 0.4362 4.0229 38 1 3.8277 1.6900 5.1146 39 1 2.1676 -0.6975 7.3739 40 1 4.1013 3.1775 -2.0015 41 1 5.5425 5.1045 0.0096 42 1 5.5637 5.2429 -1.8295 43 1 3.0372 5.4745 -1.8413 44 1 3.0152 5.3360 -0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424100324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -40.512742 kcal Electronic energy + Delta-G solvation = -21653.677481 eV Core-core repulsion = 18605.624220 eV Total energy + Delta-G solvation = -3048.053260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61411 -38.06198 -37.41975 -36.23197 -34.85780 -34.22410 -31.71181 -29.61278 -28.35843 -26.03439 -24.58888 -23.54649 -23.25421 -22.23055 -21.78702 -19.92385 -18.60824 -18.13724 -17.64055 -16.64638 -16.28727 -16.19297 -16.07365 -15.58380 -15.11553 -14.91236 -14.70931 -14.47980 -14.07510 -13.97189 -13.94805 -13.51687 -13.34060 -12.93735 -12.78445 -12.65104 -12.54326 -12.30842 -12.12528 -11.88955 -11.80862 -11.76448 -11.58069 -11.32665 -11.28033 -11.19977 -10.55914 -10.38482 -9.69424 -9.36987 -8.21916 -6.32043 1.38348 1.39645 1.47397 1.51315 1.87052 2.38887 3.00026 3.11668 3.42312 3.71219 3.81395 3.96162 4.04313 4.07932 4.13513 4.18377 4.25951 4.27894 4.40595 4.53656 4.66482 4.71985 4.76250 4.82003 4.84144 4.92073 4.99512 5.03339 5.10085 5.15507 5.32123 5.38599 5.42892 5.44126 5.54422 5.64428 5.78670 5.80173 6.02490 6.20468 6.34920 6.43287 6.81851 7.17265 7.36779 8.88647 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.005609 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.238452 B = 4990.865184 C = 5968.769331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.133 4.133 4 C 0.103 3.897 5 N -0.582 5.582 6 C 0.524 3.476 7 O -0.559 6.559 8 C 0.078 3.922 9 H 0.107 0.893 10 N -0.830 5.830 11 C -0.120 4.120 12 C 0.036 3.964 13 C -0.544 4.544 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.273 1.273 21 C 0.074 3.926 22 C -0.199 4.199 23 C -0.189 4.189 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.343 0.657 34 H 0.353 0.647 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.003 0.997 38 H 0.001 0.999 39 H 0.264 0.736 40 H 0.165 0.835 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 1.609 -18.270 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.171 4.171 4 C -0.018 4.018 5 N -0.312 5.312 6 C 0.313 3.687 7 O -0.438 6.438 8 C -0.037 4.037 9 H 0.125 0.875 10 N -0.361 5.361 11 C -0.160 4.160 12 C -0.002 4.002 13 C -0.582 4.582 14 H 0.068 0.932 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.779 3.221 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.198 1.198 21 C -0.029 4.029 22 C -0.237 4.237 23 C -0.227 4.227 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.073 0.927 40 H 0.182 0.818 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.709 1.943 -18.688 18.866 hybrid contribution -1.668 0.144 1.829 2.480 sum 0.040 2.087 -16.859 16.988 Atomic orbital electron populations 1.21754 0.95977 1.01877 1.01405 1.21429 0.96008 0.95653 1.02611 1.22042 0.95010 0.97901 1.02180 1.21979 0.94375 0.80654 1.04825 1.47419 1.63379 1.14339 1.06039 1.20756 0.75417 0.87964 0.84521 1.90492 1.49174 1.19173 1.84968 1.21521 0.91664 0.98811 0.91707 0.87510 1.58825 1.46843 1.08210 1.22221 1.22162 0.95972 0.99374 0.98500 1.18908 0.95629 0.93425 0.92201 1.21521 1.00880 1.21488 1.14317 0.93160 1.25788 1.00466 0.94856 0.97697 1.70040 1.35574 1.24414 1.26386 0.85665 0.80128 0.78037 0.78239 1.19245 1.20589 1.19806 1.22021 1.05424 0.85799 0.89681 1.23705 0.94243 1.00931 1.04773 1.23193 0.96169 1.00676 1.02687 0.94632 0.91656 0.92183 0.89519 0.93030 0.90384 0.93929 0.90027 0.86999 0.84420 0.83232 0.94462 0.91639 0.97869 0.98067 0.92682 0.81800 0.88029 0.86941 0.86169 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.12 -2.43 5.93 30.59 0.18 -2.25 16 3 C -0.13 -2.90 5.47 30.60 0.17 -2.74 16 4 C 0.10 2.16 5.45 86.38 0.47 2.63 16 5 N -0.58 -15.14 2.85 -797.83 -2.27 -17.41 16 6 C 0.52 17.69 6.62 87.66 0.58 18.27 16 7 O -0.56 -21.69 12.09 -3.04 -0.04 -21.73 16 8 C 0.08 2.72 2.59 44.17 0.11 2.84 16 9 H 0.11 3.48 5.85 -2.39 -0.01 3.47 16 10 N -0.83 -29.51 9.02 -171.81 -1.55 -31.06 16 11 C -0.12 -4.92 4.79 30.59 0.15 -4.78 16 12 C 0.04 1.77 4.71 29.85 0.14 1.91 16 13 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 14 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 15 C 0.01 0.60 5.46 84.66 0.46 1.06 16 16 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 17 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C 0.07 1.62 6.62 44.99 0.30 1.92 16 22 C -0.20 -4.89 9.64 30.62 0.30 -4.59 16 23 C -0.19 -4.49 9.87 30.62 0.30 -4.18 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.22 5.79 -2.39 -0.01 1.20 16 31 H 0.08 1.88 5.46 -2.39 -0.01 1.87 16 32 H 0.11 1.57 8.13 -2.38 -0.02 1.55 16 33 H 0.34 12.57 8.55 -89.70 -0.77 11.80 16 34 H 0.35 12.69 7.50 -89.69 -0.67 12.01 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.60 5.72 -2.38 -0.01 2.58 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 38 H 0.00 0.06 6.83 -2.39 -0.02 0.04 16 39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.10 3.33 5.25 -4.43 -0.02 3.30 16 42 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 1.93 7.55 -2.39 -0.02 1.91 16 Total: -1.00 -65.55 346.50 2.10 -63.45 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.46 Total: 37.40 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 4.11 Total: -22.43 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -3.54 Total: -102.31 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -65.55 2.10 -63.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424100324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.935 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds