Wall clock time and date at job start Mon Mar 30 2020 00:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46632 * 2 1 4 4 C 1.52996 * 109.47328 * 119.99976 * 2 1 3 5 5 H 1.09001 * 109.47372 * 300.00367 * 4 2 1 6 6 C 1.52997 * 109.46975 * 179.97438 * 4 2 1 7 7 C 1.53006 * 109.47164 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 6 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34778 * 120.00288 * 84.99811 * 11 9 8 13 13 O 1.21589 * 119.99852 * 359.97438 * 12 11 9 14 14 N 1.34776 * 120.00011 * 179.97438 * 12 11 9 15 15 C 1.46502 * 120.00068 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47573 * 180.02562 * 15 14 12 17 17 H 1.08011 * 119.99431 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00530 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00265 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.46918 * 90.00029 * 20 18 16 22 22 H 1.48499 * 109.47087 * 209.99640 * 20 18 16 23 23 H 1.48503 * 109.47399 * 329.99874 * 20 18 16 24 24 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 25 25 H 1.09002 * 109.47398 * 59.99728 * 1 2 3 26 26 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99548 * 1 2 3 28 28 H 1.09001 * 109.47194 * 240.00452 * 2 1 3 29 29 H 1.09004 * 109.46832 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47457 * 300.00244 * 3 2 1 31 31 H 1.09001 * 109.47420 * 60.00585 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00370 * 6 4 2 33 33 H 1.09000 * 109.47140 * 60.00388 * 6 4 2 34 34 H 1.08998 * 109.46505 * 299.99708 * 7 6 4 35 35 H 1.08996 * 109.46884 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 38 38 H 0.97001 * 120.00197 * 264.99912 * 11 9 8 39 39 H 0.96997 * 120.00068 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.47226 * 300.00481 * 15 14 12 41 41 H 1.08999 * 109.47244 * 59.99950 * 15 14 12 42 42 H 0.97003 * 120.00231 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 24 9 8 44 44 H 1.09004 * 109.47108 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7217 1.2488 7 6 4.0801 -1.4435 2.4977 8 6 3.5696 -2.8858 2.4975 9 6 2.0396 -2.8853 2.4978 10 1 1.6767 -2.3716 3.3880 11 7 1.5509 -4.2663 2.4982 12 6 1.4222 -4.9354 3.6610 13 8 1.7122 -4.3929 4.7098 14 7 0.9720 -6.2058 3.6614 15 6 0.8327 -6.9332 4.9253 16 6 0.3156 -8.3219 4.6514 17 1 0.1115 -8.6318 3.6371 18 6 0.1039 -9.1972 5.6954 19 7 -0.3478 -10.4089 5.4564 20 14 0.4576 -8.6614 7.4497 21 1 -0.7638 -8.0546 8.0376 22 1 0.8612 -9.8414 8.2558 23 1 1.5562 -7.6622 7.4502 24 6 1.5296 -2.1636 1.2489 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.9330 -1.2358 0.3588 33 1 3.9337 0.3058 1.2486 34 1 3.7172 -0.9298 3.3879 35 1 5.1701 -1.4435 2.4976 36 1 3.9327 -3.3999 3.3874 37 1 3.9326 -3.3995 1.6072 38 1 1.3198 -4.6993 1.6614 39 1 0.7410 -6.6386 2.8247 40 1 1.8037 -6.9978 5.4164 41 1 0.1325 -6.4056 5.5730 42 1 -0.4971 -11.0246 6.1909 43 1 1.8925 -2.6772 0.3587 44 1 0.4395 -2.1636 1.2489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426415400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:20 Heat of formation + Delta-G solvation = -71.139519 kcal Electronic energy + Delta-G solvation = -20856.433381 eV Core-core repulsion = 17807.052043 eV Total energy + Delta-G solvation = -3049.381337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97335 -38.66300 -35.59910 -34.14364 -33.42482 -32.26016 -30.16553 -29.22047 -27.68205 -26.96347 -23.36342 -22.65752 -21.69395 -20.42918 -20.13355 -19.73747 -18.11356 -16.39414 -16.24616 -15.30917 -14.99618 -14.84809 -14.36412 -14.22219 -14.04107 -13.75513 -13.54333 -13.48322 -13.04139 -12.78529 -12.51587 -12.34113 -12.20385 -11.87439 -11.55752 -11.50454 -11.24895 -11.18252 -10.94879 -10.84074 -10.73180 -10.63008 -10.29879 -10.13397 -9.93128 -9.50237 -9.40536 -8.77455 -8.69913 -7.95885 -6.18043 -4.19632 3.28122 3.31684 3.38544 3.46214 3.87007 4.37089 4.38465 4.52949 4.60177 4.80450 4.92238 4.99123 5.08918 5.17578 5.17731 5.22047 5.35552 5.36982 5.45100 5.48145 5.50617 5.52794 5.62586 5.71214 5.77826 5.89233 5.92297 5.97421 6.02516 6.04759 6.18747 6.23347 6.32096 6.40567 6.79965 6.91793 7.16007 7.30031 7.46427 7.64682 8.32588 8.74088 8.86818 9.28068 9.44552 10.94013 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.003370 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.783831 B = 8306.040993 C = 8643.536225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.078 4.078 5 H 0.073 0.927 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.131 4.131 9 C 0.167 3.833 10 H 0.084 0.916 11 N -0.752 5.752 12 C 0.695 3.305 13 O -0.604 6.604 14 N -0.724 5.724 15 C 0.239 3.761 16 C -0.541 4.541 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.391 0.609 39 H 0.392 0.608 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.267 0.733 43 H 0.065 0.935 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 21.386 -12.859 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.097 4.097 5 H 0.091 0.909 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.170 4.170 9 C 0.061 3.939 10 H 0.102 0.898 11 N -0.407 5.407 12 C 0.394 3.606 13 O -0.484 6.484 14 N -0.376 5.376 15 C 0.116 3.884 16 C -0.579 4.579 17 H 0.097 0.903 18 C -0.127 4.127 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.184 1.184 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.224 0.776 39 H 0.225 0.775 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.752 21.663 -11.750 25.307 hybrid contribution -0.114 -0.398 0.124 0.432 sum 5.638 21.265 -11.626 24.883 Atomic orbital electron populations 1.21917 0.95296 1.02063 1.01578 1.21129 0.95716 0.96038 0.98034 1.21900 1.01167 0.96014 1.01569 1.21147 0.95398 0.94972 0.98190 0.90905 1.21677 0.94970 1.00374 0.98318 1.21490 1.00163 0.95649 0.98146 1.21962 0.95895 0.96630 1.02467 1.20674 0.93124 0.81363 0.98715 0.89799 1.45222 1.72891 1.14758 1.07873 1.16144 0.78728 0.81917 0.83770 1.90852 1.58048 1.68845 1.30643 1.45400 1.68808 1.11564 1.11874 1.19336 0.96556 0.91214 0.81305 1.21106 1.45436 0.95267 0.96117 0.90338 1.24781 0.94029 0.94559 0.99290 1.69881 1.44753 1.05931 1.32609 0.86810 0.79847 0.78637 0.84362 1.19865 1.20966 1.18423 1.21917 1.01135 0.95360 0.97597 0.92981 0.92217 0.92679 0.91298 0.92387 0.92989 0.92722 0.92034 0.91752 0.91834 0.91993 0.91270 0.92145 0.77582 0.77540 0.95993 0.96438 0.92307 0.91592 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 2 C -0.09 -0.65 2.50 -90.62 -0.23 -0.88 16 3 C -0.15 -0.97 8.84 37.16 0.33 -0.64 16 4 C -0.08 -0.65 1.78 -90.62 -0.16 -0.81 16 5 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 6 C -0.12 -0.93 4.85 -26.73 -0.13 -1.06 16 7 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 8 C -0.13 -1.59 5.49 -26.73 -0.15 -1.74 16 9 C 0.17 2.13 2.45 -67.93 -0.17 1.97 16 10 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 11 N -0.75 -11.03 5.08 -58.68 -0.30 -11.32 16 12 C 0.69 13.99 8.53 -86.92 -0.74 13.25 16 13 O -0.60 -14.54 16.01 5.29 0.08 -14.46 16 14 N -0.72 -15.28 5.55 -66.41 -0.37 -15.64 16 15 C 0.24 6.06 4.50 -5.19 -0.02 6.04 16 16 C -0.54 -15.12 9.83 -34.44 -0.34 -15.46 16 17 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 18 C 0.08 2.21 5.47 -17.83 -0.10 2.11 16 19 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 20 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 C -0.12 -1.15 4.32 -26.73 -0.12 -1.27 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.39 4.64 8.62 -40.82 -0.35 4.29 16 39 H 0.39 7.25 8.34 -40.82 -0.34 6.90 16 40 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 41 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -32.31 341.02 -8.83 -41.14 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.84 Total: 4.64 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.65 Total: -0.56 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.11 Total: -53.06 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.08 Total: -14.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.31 -8.83 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.000 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds