Wall clock time and date at job start Mon Mar 30 2020 00:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46632 * 2 1 4 4 C 1.52996 * 109.47328 * 119.99976 * 2 1 3 5 5 H 1.09001 * 109.47372 * 300.00367 * 4 2 1 6 6 C 1.52997 * 109.46975 * 179.97438 * 4 2 1 7 7 C 1.53006 * 109.47164 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 6 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34778 * 120.00288 * 84.99811 * 11 9 8 13 13 O 1.21589 * 119.99852 * 359.97438 * 12 11 9 14 14 N 1.34776 * 120.00011 * 179.97438 * 12 11 9 15 15 C 1.46502 * 120.00068 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47573 * 180.02562 * 15 14 12 17 17 H 1.08011 * 119.99431 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00530 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00265 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.46918 * 90.00029 * 20 18 16 22 22 H 1.48499 * 109.47087 * 209.99640 * 20 18 16 23 23 H 1.48503 * 109.47399 * 329.99874 * 20 18 16 24 24 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 25 25 H 1.09002 * 109.47398 * 59.99728 * 1 2 3 26 26 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99548 * 1 2 3 28 28 H 1.09001 * 109.47194 * 240.00452 * 2 1 3 29 29 H 1.09004 * 109.46832 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47457 * 300.00244 * 3 2 1 31 31 H 1.09001 * 109.47420 * 60.00585 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00370 * 6 4 2 33 33 H 1.09000 * 109.47140 * 60.00388 * 6 4 2 34 34 H 1.08998 * 109.46505 * 299.99708 * 7 6 4 35 35 H 1.08996 * 109.46884 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 38 38 H 0.97001 * 120.00197 * 264.99912 * 11 9 8 39 39 H 0.96997 * 120.00068 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.47226 * 300.00481 * 15 14 12 41 41 H 1.08999 * 109.47244 * 59.99950 * 15 14 12 42 42 H 0.97003 * 120.00231 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 24 9 8 44 44 H 1.09004 * 109.47108 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7217 1.2488 7 6 4.0801 -1.4435 2.4977 8 6 3.5696 -2.8858 2.4975 9 6 2.0396 -2.8853 2.4978 10 1 1.6767 -2.3716 3.3880 11 7 1.5509 -4.2663 2.4982 12 6 1.4222 -4.9354 3.6610 13 8 1.7122 -4.3929 4.7098 14 7 0.9720 -6.2058 3.6614 15 6 0.8327 -6.9332 4.9253 16 6 0.3156 -8.3219 4.6514 17 1 0.1115 -8.6318 3.6371 18 6 0.1039 -9.1972 5.6954 19 7 -0.3478 -10.4089 5.4564 20 14 0.4576 -8.6614 7.4497 21 1 -0.7638 -8.0546 8.0376 22 1 0.8612 -9.8414 8.2558 23 1 1.5562 -7.6622 7.4502 24 6 1.5296 -2.1636 1.2489 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.9330 -1.2358 0.3588 33 1 3.9337 0.3058 1.2486 34 1 3.7172 -0.9298 3.3879 35 1 5.1701 -1.4435 2.4976 36 1 3.9327 -3.3999 3.3874 37 1 3.9326 -3.3995 1.6072 38 1 1.3198 -4.6993 1.6614 39 1 0.7410 -6.6386 2.8247 40 1 1.8037 -6.9978 5.4164 41 1 0.1325 -6.4056 5.5730 42 1 -0.4971 -11.0246 6.1909 43 1 1.8925 -2.6772 0.3587 44 1 0.4395 -2.1636 1.2489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426415400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:20 Heat of formation + Delta-G solvation = -92.635388 kcal Electronic energy + Delta-G solvation = -20857.365511 eV Core-core repulsion = 17807.052043 eV Total energy + Delta-G solvation = -3050.313468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23219 -39.82197 -36.65149 -35.96041 -34.67473 -34.19843 -31.15832 -30.27484 -29.21226 -27.76890 -24.50911 -23.95288 -22.95477 -21.90002 -21.06876 -20.59010 -19.76590 -18.30711 -17.56179 -16.56562 -16.46753 -16.16907 -15.64725 -15.30426 -15.15263 -14.87469 -14.66693 -14.48198 -14.37160 -14.17334 -14.06054 -13.53287 -13.06359 -13.02120 -12.72638 -12.58571 -12.29285 -12.25819 -12.06688 -11.92739 -11.91517 -11.65722 -11.54879 -11.42029 -11.24479 -10.93789 -10.92429 -10.90808 -10.21848 -9.62956 -8.39996 -6.46686 1.33166 1.34903 1.48681 1.88356 2.23208 2.28837 2.95608 3.46673 3.64664 3.80408 3.97360 4.08311 4.18122 4.27019 4.42745 4.45733 4.52141 4.62555 4.72357 4.75736 4.77967 4.80713 4.88914 5.04989 5.06259 5.10126 5.11234 5.13908 5.22142 5.25001 5.26189 5.29578 5.31295 5.44484 5.47623 5.56023 5.58759 5.66879 5.69724 6.00529 6.30868 6.55457 7.14873 7.29334 7.69877 8.74793 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.003370 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.783831 B = 8306.040993 C = 8643.536225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.075 4.075 5 H 0.062 0.938 6 C -0.110 4.110 7 C -0.113 4.113 8 C -0.127 4.127 9 C 0.164 3.836 10 H 0.056 0.944 11 N -0.730 5.730 12 C 0.694 3.306 13 O -0.645 6.645 14 N -0.723 5.723 15 C 0.252 3.748 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.027 3.973 19 N -0.931 5.931 20 Si 0.937 3.063 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.262 1.262 24 C -0.112 4.112 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.405 0.595 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.273 0.727 43 H 0.083 0.917 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 22.962 -14.125 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 C -0.206 4.206 4 C -0.094 4.094 5 H 0.081 0.919 6 C -0.147 4.147 7 C -0.151 4.151 8 C -0.165 4.165 9 C 0.059 3.941 10 H 0.074 0.926 11 N -0.386 5.386 12 C 0.393 3.607 13 O -0.528 6.528 14 N -0.377 5.377 15 C 0.128 3.872 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.570 5.570 20 Si 0.761 3.239 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.186 1.186 24 C -0.150 4.150 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.245 0.755 39 H 0.240 0.760 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.298 23.258 -13.088 27.421 hybrid contribution -0.287 -0.870 0.439 1.016 sum 6.010 22.388 -12.649 26.408 Atomic orbital electron populations 1.21930 0.95501 1.01881 1.01682 1.21085 0.95497 0.96400 0.97407 1.21895 1.01540 0.95445 1.01714 1.21129 0.95698 0.94032 0.98587 0.91922 1.21648 0.94530 1.01038 0.97489 1.21474 1.00764 0.93974 0.98913 1.21906 0.95189 0.98191 1.01258 1.20866 0.93721 0.80005 0.99513 0.92570 1.45089 1.71404 1.15197 1.06893 1.16273 0.78296 0.81489 0.84614 1.90822 1.59684 1.69609 1.32669 1.45121 1.69408 1.12033 1.11126 1.18922 0.95206 0.90199 0.82886 1.21273 1.45165 0.96454 0.95418 0.92249 1.25571 0.93842 0.94558 1.03345 1.69974 1.45863 1.07029 1.34124 0.85859 0.79808 0.78515 0.79716 1.18941 1.19661 1.18647 1.21866 1.01178 0.95846 0.96092 0.92234 0.92540 0.93279 0.90534 0.91786 0.92361 0.93128 0.90960 0.90334 0.92844 0.90984 0.94912 0.90800 0.75522 0.76031 0.97387 0.97442 0.91805 0.89843 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.84 71.98 0.64 -1.27 16 2 C -0.09 -0.99 2.50 -10.79 -0.03 -1.02 16 3 C -0.15 -1.54 8.84 71.98 0.64 -0.91 16 4 C -0.08 -1.09 1.78 -10.80 -0.02 -1.11 16 5 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 6 C -0.11 -1.47 4.85 30.60 0.15 -1.33 16 7 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 8 C -0.13 -2.99 5.49 30.59 0.17 -2.83 16 9 C 0.16 4.07 2.45 44.99 0.11 4.18 16 10 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 11 N -0.73 -20.78 5.08 -457.82 -2.33 -23.11 16 12 C 0.69 27.95 8.53 179.05 1.53 29.48 16 13 O -0.65 -31.60 16.01 -4.00 -0.06 -31.66 16 14 N -0.72 -30.49 5.55 -482.29 -2.68 -33.16 16 15 C 0.25 12.89 4.50 85.63 0.38 13.28 16 16 C -0.55 -30.75 9.83 25.60 0.25 -30.50 16 17 H 0.06 3.50 7.84 -2.90 -0.02 3.48 16 18 C 0.03 1.56 5.47 84.65 0.46 2.02 16 19 N -0.93 -56.20 13.96 21.44 0.30 -55.90 16 20 Si 0.94 44.98 27.47 68.60 1.88 46.86 16 21 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.26 -12.60 6.54 99.48 0.65 -11.94 16 24 C -0.11 -1.88 4.32 30.59 0.13 -1.74 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.74 6.43 -2.39 -0.02 0.72 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.59 6.43 -2.38 -0.02 0.58 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.88 6.43 -2.39 -0.02 0.87 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 8.92 8.62 -92.71 -0.80 8.12 16 39 H 0.40 14.79 8.34 -92.71 -0.77 14.02 16 40 H 0.01 0.44 7.20 -2.39 -0.02 0.43 16 41 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.24 6.43 -2.38 -0.02 1.22 16 Total: -1.00 -69.90 341.02 1.06 -68.84 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.65 Total: 21.76 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.59 Total: 6.38 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.71 Total: -112.18 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.06 Total: -31.66 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -69.90 1.06 -68.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.794 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds