Wall clock time and date at job start Mon Mar 30 2020 00:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47283 * 2 1 4 4 C 1.52996 * 109.47156 * 119.99962 * 2 1 3 5 5 H 1.08991 * 109.47627 * 299.99974 * 4 2 1 6 6 C 1.53001 * 109.47349 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47349 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47220 * 60.00418 * 7 6 4 9 9 C 1.53008 * 109.47074 * 300.00109 * 8 7 6 10 10 H 1.08999 * 109.47058 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47014 * 299.99808 * 9 8 7 12 12 C 1.34777 * 119.99665 * 275.27733 * 11 9 8 13 13 O 1.21583 * 120.00270 * 359.72083 * 12 11 9 14 14 N 1.34775 * 119.99585 * 179.72218 * 12 11 9 15 15 C 1.46507 * 119.99876 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46959 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99656 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00420 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99723 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46867 * 90.00341 * 20 18 16 22 22 H 1.48503 * 109.46903 * 210.00008 * 20 18 16 23 23 H 1.48497 * 109.47553 * 329.99900 * 20 18 16 24 24 C 1.52999 * 109.46675 * 59.99923 * 9 8 7 25 25 H 1.08996 * 109.46873 * 300.00054 * 1 2 3 26 26 H 1.09003 * 109.46770 * 59.99717 * 1 2 3 27 27 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47368 * 240.00283 * 2 1 3 29 29 H 1.08997 * 109.47096 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47526 * 300.00241 * 3 2 1 31 31 H 1.09005 * 109.46993 * 60.00320 * 3 2 1 32 32 H 1.09005 * 109.47539 * 300.00544 * 6 4 2 33 33 H 1.09006 * 109.47137 * 60.00162 * 6 4 2 34 34 H 1.08997 * 109.47425 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47216 * 300.00101 * 7 6 4 36 36 H 1.08995 * 109.47753 * 179.97438 * 8 7 6 37 37 H 1.09005 * 109.47067 * 59.99557 * 8 7 6 38 38 H 0.97001 * 119.99790 * 94.99446 * 11 9 8 39 39 H 0.97000 * 120.00523 * 0.02562 * 14 12 11 40 40 H 1.08998 * 109.47039 * 300.00042 * 15 14 12 41 41 H 1.08994 * 109.46660 * 60.00264 * 15 14 12 42 42 H 0.96999 * 120.00495 * 179.97438 * 19 18 16 43 43 H 1.08991 * 109.47925 * 60.00288 * 24 9 8 44 44 H 1.09009 * 109.46506 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7218 1.2489 7 6 4.0800 -1.4425 2.4985 8 6 3.5696 -2.8848 2.4994 9 6 2.0395 -2.8843 2.4997 10 1 1.6759 -3.9119 2.4999 11 7 1.5516 -2.1929 3.6955 12 6 1.4282 -2.8632 4.8582 13 8 1.7170 -4.0430 4.9134 14 7 0.9847 -2.2257 5.9597 15 6 0.8500 -2.9545 7.2235 16 6 0.3387 -2.0205 8.2900 17 1 0.1349 -0.9873 8.0505 18 6 0.1322 -2.4847 9.5717 19 7 0.3818 -3.7425 9.8637 20 14 -0.5009 -1.3268 10.8937 21 1 -1.9855 -1.3579 10.9094 22 1 0.0173 -1.7564 12.2175 23 1 -0.0377 0.0543 10.6054 24 6 1.5296 -2.1636 1.2501 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.9331 -1.2358 0.3589 33 1 3.9337 0.3058 1.2487 34 1 5.1700 -1.4425 2.4985 35 1 3.7170 -0.9280 3.3882 36 1 3.9332 -3.3984 3.3893 37 1 3.9325 -3.3992 1.6096 38 1 1.3213 -1.2516 3.6515 39 1 0.7539 -1.2846 5.9157 40 1 0.1475 -3.7779 7.0950 41 1 1.8217 -3.3488 7.5208 42 1 0.2368 -4.0691 10.7655 43 1 1.8925 -2.6780 0.3603 44 1 0.4395 -2.1629 1.2505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426415407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:27 Heat of formation + Delta-G solvation = -71.114827 kcal Electronic energy + Delta-G solvation = -21218.020819 eV Core-core repulsion = 18168.640553 eV Total energy + Delta-G solvation = -3049.380266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11096 -38.39596 -35.49461 -34.01222 -32.94969 -32.16585 -30.12357 -29.25562 -27.37209 -26.73350 -23.27057 -22.79409 -22.11915 -20.48867 -20.12019 -19.02907 -17.98120 -16.14687 -15.93179 -15.55437 -14.96470 -14.65751 -14.51783 -14.11852 -13.82859 -13.60096 -13.45794 -13.29023 -12.93369 -12.51222 -12.41091 -12.10362 -11.91092 -11.85133 -11.66703 -11.46869 -11.27275 -11.12690 -10.92516 -10.86556 -10.83453 -10.51401 -10.26510 -10.06513 -9.90788 -9.32970 -9.29898 -8.69830 -8.57101 -7.68535 -6.11899 -4.18199 3.26817 3.32278 3.34791 3.51519 4.04715 4.35966 4.44690 4.54372 4.63041 4.88259 5.01909 5.07237 5.20589 5.24090 5.26923 5.29134 5.35197 5.42369 5.51926 5.55757 5.56616 5.68065 5.69975 5.76567 5.80943 5.90425 5.98251 6.01846 6.10081 6.16274 6.24920 6.33400 6.39757 6.44249 7.05581 7.20929 7.58322 7.62041 7.62647 7.97555 8.10956 8.81719 9.02939 9.40532 9.55340 10.98399 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.003862 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.840634 B = 7247.949145 C = 7751.245525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.083 4.083 5 H 0.069 0.931 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.167 3.833 10 H 0.084 0.916 11 N -0.749 5.749 12 C 0.692 3.308 13 O -0.602 6.602 14 N -0.731 5.731 15 C 0.268 3.732 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.388 0.612 39 H 0.385 0.615 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.265 0.735 43 H 0.073 0.927 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 9.198 -20.828 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.101 4.101 5 H 0.088 0.912 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.061 3.939 10 H 0.102 0.898 11 N -0.407 5.407 12 C 0.392 3.608 13 O -0.482 6.482 14 N -0.383 5.383 15 C 0.146 3.854 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.160 4.160 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.222 0.778 39 H 0.217 0.783 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.951 7.934 -20.563 22.392 hybrid contribution -0.541 1.433 0.795 1.726 sum 3.410 9.368 -19.768 22.140 Atomic orbital electron populations 1.21914 0.95319 1.01996 1.01605 1.21134 0.95671 0.96035 0.98079 1.21902 1.01160 0.96060 1.01570 1.21203 0.95528 0.95581 0.97825 0.91238 1.21650 0.94891 1.00304 0.98277 1.21476 0.99814 0.96114 0.98083 1.21942 0.96027 0.96755 1.02300 1.20621 0.93108 0.96887 0.83262 0.89795 1.45285 1.73036 1.13251 1.09088 1.16186 0.78848 0.85302 0.80441 1.90856 1.57875 1.14664 1.84784 1.45712 1.68984 1.13476 1.10178 1.18946 0.97148 0.91986 0.77282 1.21238 1.45761 0.96506 0.94413 0.92013 1.24943 0.95286 0.95308 0.98496 1.69981 1.47453 1.14208 1.20699 0.86425 0.79006 0.80716 0.80796 1.20503 1.21032 1.19804 1.21942 1.01130 0.95467 0.97497 0.92615 0.93054 0.92261 0.91380 0.92418 0.93058 0.92682 0.92169 0.91945 0.92421 0.91795 0.91209 0.91744 0.77776 0.78341 0.95854 0.95835 0.92506 0.90791 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.09 -0.68 2.51 -90.62 -0.23 -0.91 16 3 C -0.15 -1.06 8.84 37.16 0.33 -0.74 16 4 C -0.08 -0.71 1.60 -90.62 -0.15 -0.86 16 5 H 0.07 0.64 6.50 -51.93 -0.34 0.31 16 6 C -0.11 -0.99 4.85 -26.73 -0.13 -1.12 16 7 C -0.12 -1.27 5.77 -26.74 -0.15 -1.43 16 8 C -0.13 -1.65 5.60 -26.73 -0.15 -1.80 16 9 C 0.17 2.20 2.78 -67.93 -0.19 2.01 16 10 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 11 N -0.75 -11.31 4.24 -58.67 -0.25 -11.56 16 12 C 0.69 14.52 8.53 -86.92 -0.74 13.77 16 13 O -0.60 -15.27 16.01 5.29 0.08 -15.18 16 14 N -0.73 -15.99 5.55 -66.41 -0.37 -16.36 16 15 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 16 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.12 -1.18 4.54 -26.73 -0.12 -1.30 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.78 7.60 -51.93 -0.39 0.38 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.39 4.91 6.88 -40.82 -0.28 4.63 16 39 H 0.38 7.23 8.34 -40.82 -0.34 6.89 16 40 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.70 6.43 -51.92 -0.33 0.36 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -32.11 340.19 -9.03 -41.13 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.69 Total: 6.02 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.65 Total: 0.51 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.12 Total: -53.68 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.08 Total: -15.18 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.11 -9.03 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.984 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds