Wall clock time and date at job start Mon Mar 30 2020 00:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47283 * 2 1 4 4 C 1.52996 * 109.47156 * 119.99962 * 2 1 3 5 5 H 1.08991 * 109.47627 * 299.99974 * 4 2 1 6 6 C 1.53001 * 109.47349 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47349 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47220 * 60.00418 * 7 6 4 9 9 C 1.53008 * 109.47074 * 300.00109 * 8 7 6 10 10 H 1.08999 * 109.47058 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47014 * 299.99808 * 9 8 7 12 12 C 1.34777 * 119.99665 * 275.27733 * 11 9 8 13 13 O 1.21583 * 120.00270 * 359.72083 * 12 11 9 14 14 N 1.34775 * 119.99585 * 179.72218 * 12 11 9 15 15 C 1.46507 * 119.99876 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46959 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99656 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00420 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99723 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46867 * 90.00341 * 20 18 16 22 22 H 1.48503 * 109.46903 * 210.00008 * 20 18 16 23 23 H 1.48497 * 109.47553 * 329.99900 * 20 18 16 24 24 C 1.52999 * 109.46675 * 59.99923 * 9 8 7 25 25 H 1.08996 * 109.46873 * 300.00054 * 1 2 3 26 26 H 1.09003 * 109.46770 * 59.99717 * 1 2 3 27 27 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47368 * 240.00283 * 2 1 3 29 29 H 1.08997 * 109.47096 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47526 * 300.00241 * 3 2 1 31 31 H 1.09005 * 109.46993 * 60.00320 * 3 2 1 32 32 H 1.09005 * 109.47539 * 300.00544 * 6 4 2 33 33 H 1.09006 * 109.47137 * 60.00162 * 6 4 2 34 34 H 1.08997 * 109.47425 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47216 * 300.00101 * 7 6 4 36 36 H 1.08995 * 109.47753 * 179.97438 * 8 7 6 37 37 H 1.09005 * 109.47067 * 59.99557 * 8 7 6 38 38 H 0.97001 * 119.99790 * 94.99446 * 11 9 8 39 39 H 0.97000 * 120.00523 * 0.02562 * 14 12 11 40 40 H 1.08998 * 109.47039 * 300.00042 * 15 14 12 41 41 H 1.08994 * 109.46660 * 60.00264 * 15 14 12 42 42 H 0.96999 * 120.00495 * 179.97438 * 19 18 16 43 43 H 1.08991 * 109.47925 * 60.00288 * 24 9 8 44 44 H 1.09009 * 109.46506 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7218 1.2489 7 6 4.0800 -1.4425 2.4985 8 6 3.5696 -2.8848 2.4994 9 6 2.0395 -2.8843 2.4997 10 1 1.6759 -3.9119 2.4999 11 7 1.5516 -2.1929 3.6955 12 6 1.4282 -2.8632 4.8582 13 8 1.7170 -4.0430 4.9134 14 7 0.9847 -2.2257 5.9597 15 6 0.8500 -2.9545 7.2235 16 6 0.3387 -2.0205 8.2900 17 1 0.1349 -0.9873 8.0505 18 6 0.1322 -2.4847 9.5717 19 7 0.3818 -3.7425 9.8637 20 14 -0.5009 -1.3268 10.8937 21 1 -1.9855 -1.3579 10.9094 22 1 0.0173 -1.7564 12.2175 23 1 -0.0377 0.0543 10.6054 24 6 1.5296 -2.1636 1.2501 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.9331 -1.2358 0.3589 33 1 3.9337 0.3058 1.2487 34 1 5.1700 -1.4425 2.4985 35 1 3.7170 -0.9280 3.3882 36 1 3.9332 -3.3984 3.3893 37 1 3.9325 -3.3992 1.6096 38 1 1.3213 -1.2516 3.6515 39 1 0.7539 -1.2846 5.9157 40 1 0.1475 -3.7779 7.0950 41 1 1.8217 -3.3488 7.5208 42 1 0.2368 -4.0691 10.7655 43 1 1.8925 -2.6780 0.3603 44 1 0.4395 -2.1629 1.2505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426415407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:27 Heat of formation + Delta-G solvation = -92.042794 kcal Electronic energy + Delta-G solvation = -21218.928324 eV Core-core repulsion = 18168.640553 eV Total energy + Delta-G solvation = -3050.287771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37148 -39.73732 -36.54615 -35.93502 -34.50822 -33.86817 -31.15855 -30.20622 -28.90350 -27.81196 -24.84931 -23.96501 -23.14040 -22.12041 -20.86254 -20.27569 -19.59482 -18.05684 -17.23662 -16.83505 -16.41625 -16.29598 -15.69302 -15.33571 -14.98395 -14.70809 -14.63540 -14.28811 -14.05680 -13.95004 -13.88979 -13.26654 -13.14743 -12.99011 -12.84180 -12.71301 -12.49286 -12.27167 -12.21627 -11.99205 -11.90228 -11.56584 -11.46959 -11.24613 -11.17637 -10.89397 -10.79853 -10.75823 -10.15068 -9.53687 -8.27848 -6.44469 1.43365 1.46430 1.57409 1.96122 2.30263 2.40446 3.07004 3.57120 3.70961 3.77648 3.85758 4.15803 4.18815 4.30461 4.45391 4.47032 4.57697 4.67702 4.76745 4.79219 4.82843 4.90847 4.99528 5.08409 5.10833 5.13531 5.15420 5.26456 5.27690 5.28103 5.32351 5.34557 5.45754 5.49998 5.51052 5.60747 5.68003 5.68272 5.77267 5.86511 6.31206 6.67643 7.25236 7.35723 7.78197 8.84653 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.003862 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.840634 B = 7247.949145 C = 7751.245525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.080 4.080 5 H 0.063 0.937 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.128 4.128 9 C 0.161 3.839 10 H 0.057 0.943 11 N -0.723 5.723 12 C 0.690 3.310 13 O -0.650 6.650 14 N -0.725 5.725 15 C 0.287 3.713 16 C -0.555 4.555 17 H 0.083 0.917 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.987 3.013 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.256 1.256 24 C -0.111 4.111 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.405 0.595 39 H 0.403 0.597 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.269 0.731 43 H 0.093 0.907 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 12.017 -22.294 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 C -0.207 4.207 4 C -0.098 4.098 5 H 0.082 0.918 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.167 4.167 9 C 0.056 3.944 10 H 0.075 0.925 11 N -0.380 5.380 12 C 0.390 3.610 13 O -0.533 6.533 14 N -0.379 5.379 15 C 0.163 3.837 16 C -0.593 4.593 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.810 3.190 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.179 1.179 24 C -0.149 4.149 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.242 0.758 39 H 0.238 0.762 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.655 10.823 -22.103 24.880 hybrid contribution -0.409 0.495 1.167 1.332 sum 3.246 11.318 -20.936 24.020 Atomic orbital electron populations 1.21926 0.95440 1.01877 1.01725 1.21077 0.95495 0.96251 0.97479 1.21899 1.01441 0.95626 1.01693 1.21187 0.95574 0.94657 0.98431 0.91846 1.21612 0.94686 1.00786 0.97308 1.21450 1.00262 0.94659 0.98786 1.21899 0.95338 0.98077 1.01404 1.20848 0.93742 0.96009 0.83758 0.92477 1.45090 1.71409 1.13815 1.07715 1.16368 0.78345 0.84805 0.81472 1.90823 1.59728 1.17060 1.85689 1.45306 1.69518 1.14053 1.09031 1.18372 0.93862 0.91655 0.79773 1.21601 1.45705 0.97321 0.94629 0.89886 1.26076 0.95113 0.97067 1.01338 1.70148 1.48582 1.16708 1.21569 0.85132 0.78468 0.78658 0.76785 1.19550 1.20915 1.17929 1.21892 1.01229 0.96007 0.95786 0.93159 0.92345 0.92502 0.90533 0.91965 0.92439 0.93132 0.90829 0.90724 0.91752 0.93409 0.95265 0.89523 0.75817 0.76234 0.99836 0.99887 0.92242 0.88833 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.84 71.98 0.64 -1.28 16 2 C -0.08 -1.00 2.51 -10.79 -0.03 -1.03 16 3 C -0.15 -1.66 8.84 71.98 0.64 -1.02 16 4 C -0.08 -1.16 1.60 -10.79 -0.02 -1.17 16 5 H 0.06 1.01 6.50 -2.39 -0.02 1.00 16 6 C -0.11 -1.54 4.85 30.59 0.15 -1.39 16 7 C -0.11 -2.31 5.77 30.59 0.18 -2.14 16 8 C -0.13 -3.20 5.60 30.60 0.17 -3.03 16 9 C 0.16 4.22 2.78 44.99 0.13 4.34 16 10 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 11 N -0.72 -21.87 4.24 -457.81 -1.94 -23.81 16 12 C 0.69 29.97 8.53 179.05 1.53 31.50 16 13 O -0.65 -34.86 16.01 -3.98 -0.06 -34.92 16 14 N -0.73 -32.54 5.55 -482.30 -2.68 -35.22 16 15 C 0.29 16.40 5.43 85.63 0.46 16.86 16 16 C -0.55 -30.90 9.28 25.60 0.24 -30.66 16 17 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 18 C 0.00 0.20 5.46 84.65 0.46 0.66 16 19 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 20 Si 0.99 42.86 29.54 68.60 2.03 44.89 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 C -0.11 -1.92 4.54 30.60 0.14 -1.78 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 28 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 0.64 6.43 -2.39 -0.02 0.63 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 0.95 6.43 -2.38 -0.02 0.94 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.12 7.60 -2.39 -0.02 1.10 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.40 9.78 6.88 -92.71 -0.64 9.14 16 39 H 0.40 14.97 8.34 -92.71 -0.77 14.20 16 40 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.07 1.28 6.43 -2.38 -0.02 1.26 16 Total: -1.00 -72.96 340.19 1.88 -71.08 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.43 Total: 25.04 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 4.68 Total: 9.86 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.33 Total: -115.95 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.06 Total: -34.92 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.96 1.88 -71.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.959 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds