Wall clock time and date at job start Mon Mar 30 2020 00:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 C 1.52998 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47123 * 54.40333 * 4 3 2 6 6 C 1.53000 * 109.47136 * 294.39633 * 4 3 2 7 7 C 1.53000 * 109.47200 * 174.39834 * 4 3 2 8 8 H 1.08998 * 109.87795 * 299.58238 * 7 4 3 9 9 C 1.54328 * 109.88254 * 60.75594 * 7 4 3 10 10 C 1.55157 * 102.94297 * 141.61420 * 9 7 4 11 11 C 1.54912 * 101.58024 * 324.49574 * 10 9 7 12 12 N 1.47020 * 109.88521 * 178.56311 * 7 4 3 13 13 C 1.34771 * 125.64673 * 61.61016 * 12 7 4 14 14 O 1.21586 * 120.00535 * 354.87263 * 13 12 7 15 15 N 1.34785 * 119.99891 * 174.87643 * 13 12 7 16 16 C 1.46506 * 119.99550 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46780 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00093 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99614 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47069 * 89.99875 * 21 19 17 23 23 H 1.48493 * 109.47323 * 210.00204 * 21 19 17 24 24 H 1.48497 * 109.47143 * 330.00619 * 21 19 17 25 25 H 1.08996 * 109.47087 * 60.00744 * 1 2 3 26 26 H 1.09005 * 109.46658 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47200 * 299.99924 * 1 2 3 28 28 H 1.08997 * 109.47718 * 240.00171 * 2 1 3 29 29 H 1.09005 * 109.46973 * 119.99426 * 2 1 3 30 30 H 1.09007 * 109.47231 * 59.99996 * 3 2 1 31 31 H 1.09004 * 109.47156 * 299.99946 * 3 2 1 32 32 H 1.09006 * 109.47198 * 186.46627 * 6 4 3 33 33 H 1.08996 * 109.47669 * 306.46501 * 6 4 3 34 34 H 1.09000 * 109.46868 * 66.47371 * 6 4 3 35 35 H 1.09005 * 110.72133 * 259.97397 * 9 7 4 36 36 H 1.08996 * 110.71867 * 23.24595 * 9 7 4 37 37 H 1.09000 * 111.00170 * 206.42336 * 10 9 7 38 38 H 1.08996 * 111.03731 * 82.58582 * 10 9 7 39 39 H 1.08998 * 110.37012 * 278.17265 * 11 10 9 40 40 H 1.08997 * 110.45533 * 155.89655 * 11 10 9 41 41 H 0.96995 * 120.00067 * 0.02562 * 15 13 12 42 42 H 1.09000 * 109.47211 * 299.99371 * 16 15 13 43 43 H 1.08998 * 109.47078 * 60.00377 * 16 15 13 44 44 H 0.97006 * 119.99669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8443 -0.8347 6 6 4.0794 0.8470 1.3146 7 6 4.0799 2.8782 -0.1402 8 1 3.7268 3.3066 -1.0781 9 6 3.5859 3.7296 1.0484 10 6 4.8043 4.6406 1.3535 11 6 5.9880 3.6867 1.0559 12 7 5.5497 2.8923 -0.1061 13 6 6.3617 2.2799 -0.9903 14 8 5.8907 1.5719 -1.8593 15 7 7.6962 2.4523 -0.9113 16 6 8.5789 1.7861 -1.8722 17 6 10.0116 2.1409 -1.5678 18 1 10.2416 2.7967 -0.7411 19 6 11.0288 1.6276 -2.3441 20 7 10.7488 0.8287 -3.3506 21 14 12.8046 2.0680 -1.9674 22 1 13.3684 1.0787 -1.0140 23 1 13.5960 2.0514 -3.2237 24 1 12.8612 3.4239 -1.3646 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 5.1633 0.9515 1.3649 33 1 3.6244 1.3741 2.1532 34 1 3.8138 -0.2091 1.3620 35 1 2.7202 4.3267 0.7616 36 1 3.3529 3.0974 1.9052 37 1 4.8070 4.9526 2.3978 38 1 4.8226 5.5049 0.6896 39 1 6.1757 3.0368 1.9106 40 1 6.8839 4.2566 0.8097 41 1 8.0721 3.0167 -0.2178 42 1 8.4480 0.7065 -1.7980 43 1 8.3304 2.1138 -2.8816 44 1 11.4645 0.4672 -3.8965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426428326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:13 Heat of formation + Delta-G solvation = -54.813557 kcal Electronic energy + Delta-G solvation = -21358.912682 eV Core-core repulsion = 18310.239292 eV Total energy + Delta-G solvation = -3048.673390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14601 -37.69380 -35.79182 -34.09342 -32.51246 -31.88304 -31.08246 -28.02058 -27.00887 -26.51646 -23.86778 -22.58794 -21.89387 -21.31003 -19.56955 -18.80399 -17.59823 -16.40903 -15.96226 -15.47023 -15.11193 -14.60172 -14.48723 -14.10258 -13.94597 -13.57722 -13.17737 -12.86046 -12.80360 -12.61062 -12.20549 -11.96500 -11.90904 -11.79285 -11.57421 -11.47610 -11.25517 -11.06599 -10.92247 -10.85726 -10.73965 -10.50390 -10.33808 -10.27079 -10.16689 -9.33501 -9.22018 -8.69101 -8.26737 -7.64794 -6.12449 -4.18771 3.24470 3.26426 3.32919 3.36114 3.98670 4.33894 4.54356 4.60087 4.77402 4.90688 4.94291 5.04401 5.08278 5.23557 5.25346 5.29732 5.41643 5.48484 5.51556 5.64894 5.68073 5.74040 5.76299 5.79732 5.86914 5.93109 6.01519 6.05397 6.18633 6.19383 6.22789 6.27570 6.50830 6.55965 6.80346 7.27580 7.57125 7.61649 7.64917 7.95257 8.08313 8.80655 8.97894 9.39120 9.54020 10.97835 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.004072 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.169503 B = 6874.893398 C = 7574.707539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.109 4.109 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.140 4.140 7 C 0.165 3.835 8 H 0.067 0.933 9 C -0.131 4.131 10 C -0.131 4.131 11 C 0.102 3.898 12 N -0.639 5.639 13 C 0.712 3.288 14 O -0.595 6.595 15 N -0.729 5.729 16 C 0.268 3.732 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 5.178 11.894 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.126 4.126 5 H 0.109 0.891 6 C -0.197 4.197 7 C 0.060 3.940 8 H 0.085 0.915 9 C -0.169 4.169 10 C -0.170 4.170 11 C -0.022 4.022 12 N -0.379 5.379 13 C 0.414 3.586 14 O -0.474 6.474 15 N -0.381 5.381 16 C 0.147 3.853 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.218 0.782 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.921 4.481 10.982 20.664 hybrid contribution 1.272 0.449 0.456 1.424 sum -15.650 4.930 11.438 20.001 Atomic orbital electron populations 1.21775 0.96286 1.01282 1.01500 1.21564 0.95256 0.97258 1.02284 1.21611 0.94886 0.96660 1.01568 1.21545 0.94509 0.96738 0.99798 0.89093 1.21809 1.01413 0.99975 0.96474 1.21291 0.79608 0.95139 0.97968 0.91506 1.22794 0.97830 0.97795 0.98448 1.22737 0.94565 0.97797 1.01858 1.22180 0.97674 0.93227 0.89132 1.47665 1.05705 1.55965 1.28592 1.15674 0.81653 0.80232 0.81070 1.90849 1.75277 1.43263 1.38022 1.45756 1.03776 1.52518 1.36085 1.18960 0.86531 0.92640 0.87191 1.21224 0.90677 1.30599 1.15405 0.92058 1.24941 0.99523 0.94804 0.94752 1.69985 1.32987 1.31517 1.17806 0.86421 0.83899 0.78801 0.77802 1.20493 1.21020 1.19792 0.92891 0.93063 0.93016 0.91927 0.91950 0.92190 0.92170 0.92576 0.93170 0.93098 0.90537 0.90090 0.90292 0.90777 0.92010 0.91099 0.78243 0.95822 0.95817 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.30 5.70 -26.73 -0.15 -1.45 16 3 C -0.11 -1.16 4.34 -26.73 -0.12 -1.28 16 4 C -0.11 -1.44 2.10 -90.62 -0.19 -1.63 16 5 H 0.09 1.61 6.72 -51.93 -0.35 1.26 16 6 C -0.14 -1.77 8.33 37.16 0.31 -1.46 16 7 C 0.16 2.24 2.71 -66.95 -0.18 2.06 16 8 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 9 C -0.13 -1.25 5.30 -24.89 -0.13 -1.39 16 10 C -0.13 -1.22 7.09 -24.58 -0.17 -1.40 16 11 C 0.10 1.25 6.61 -2.53 -0.02 1.23 16 12 N -0.64 -10.36 2.16 -168.69 -0.36 -10.73 16 13 C 0.71 15.43 8.31 -86.92 -0.72 14.71 16 14 O -0.60 -15.23 15.21 5.29 0.08 -15.15 16 15 N -0.73 -16.39 5.51 -66.41 -0.37 -16.75 16 16 C 0.27 7.37 5.43 -5.19 -0.03 7.34 16 17 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 18 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 21 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.63 6.73 -51.93 -0.35 0.28 16 30 H 0.06 0.55 7.29 -51.93 -0.38 0.17 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.83 7.25 -51.93 -0.38 0.46 16 33 H 0.05 0.52 6.30 -51.93 -0.33 0.20 16 34 H 0.05 0.63 6.91 -51.93 -0.36 0.27 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.72 5.56 -51.93 -0.29 0.43 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.07 0.87 7.11 -51.93 -0.37 0.50 16 41 H 0.38 7.57 6.72 -40.82 -0.27 7.30 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -32.36 341.70 -8.91 -41.27 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.67 Total: 3.71 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.45 Total: 2.17 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.01 Total: -53.25 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.08 Total: -15.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.36 -8.91 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.546 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds