Wall clock time and date at job start Mon Mar 30 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 C 1.52998 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47123 * 54.40333 * 4 3 2 6 6 C 1.53000 * 109.47136 * 294.39633 * 4 3 2 7 7 C 1.53000 * 109.47200 * 174.39834 * 4 3 2 8 8 H 1.08998 * 109.87795 * 299.58238 * 7 4 3 9 9 C 1.54328 * 109.88254 * 60.75594 * 7 4 3 10 10 C 1.55157 * 102.94297 * 141.61420 * 9 7 4 11 11 C 1.54912 * 101.58024 * 324.49574 * 10 9 7 12 12 N 1.47020 * 109.88521 * 178.56311 * 7 4 3 13 13 C 1.34771 * 125.64673 * 61.61016 * 12 7 4 14 14 O 1.21586 * 120.00535 * 354.87263 * 13 12 7 15 15 N 1.34785 * 119.99891 * 174.87643 * 13 12 7 16 16 C 1.46506 * 119.99550 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46780 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00093 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99614 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47069 * 89.99875 * 21 19 17 23 23 H 1.48493 * 109.47323 * 210.00204 * 21 19 17 24 24 H 1.48497 * 109.47143 * 330.00619 * 21 19 17 25 25 H 1.08996 * 109.47087 * 60.00744 * 1 2 3 26 26 H 1.09005 * 109.46658 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47200 * 299.99924 * 1 2 3 28 28 H 1.08997 * 109.47718 * 240.00171 * 2 1 3 29 29 H 1.09005 * 109.46973 * 119.99426 * 2 1 3 30 30 H 1.09007 * 109.47231 * 59.99996 * 3 2 1 31 31 H 1.09004 * 109.47156 * 299.99946 * 3 2 1 32 32 H 1.09006 * 109.47198 * 186.46627 * 6 4 3 33 33 H 1.08996 * 109.47669 * 306.46501 * 6 4 3 34 34 H 1.09000 * 109.46868 * 66.47371 * 6 4 3 35 35 H 1.09005 * 110.72133 * 259.97397 * 9 7 4 36 36 H 1.08996 * 110.71867 * 23.24595 * 9 7 4 37 37 H 1.09000 * 111.00170 * 206.42336 * 10 9 7 38 38 H 1.08996 * 111.03731 * 82.58582 * 10 9 7 39 39 H 1.08998 * 110.37012 * 278.17265 * 11 10 9 40 40 H 1.08997 * 110.45533 * 155.89655 * 11 10 9 41 41 H 0.96995 * 120.00067 * 0.02562 * 15 13 12 42 42 H 1.09000 * 109.47211 * 299.99371 * 16 15 13 43 43 H 1.08998 * 109.47078 * 60.00377 * 16 15 13 44 44 H 0.97006 * 119.99669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8443 -0.8347 6 6 4.0794 0.8470 1.3146 7 6 4.0799 2.8782 -0.1402 8 1 3.7268 3.3066 -1.0781 9 6 3.5859 3.7296 1.0484 10 6 4.8043 4.6406 1.3535 11 6 5.9880 3.6867 1.0559 12 7 5.5497 2.8923 -0.1061 13 6 6.3617 2.2799 -0.9903 14 8 5.8907 1.5719 -1.8593 15 7 7.6962 2.4523 -0.9113 16 6 8.5789 1.7861 -1.8722 17 6 10.0116 2.1409 -1.5678 18 1 10.2416 2.7967 -0.7411 19 6 11.0288 1.6276 -2.3441 20 7 10.7488 0.8287 -3.3506 21 14 12.8046 2.0680 -1.9674 22 1 13.3684 1.0787 -1.0140 23 1 13.5960 2.0514 -3.2237 24 1 12.8612 3.4239 -1.3646 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 5.1633 0.9515 1.3649 33 1 3.6244 1.3741 2.1532 34 1 3.8138 -0.2091 1.3620 35 1 2.7202 4.3267 0.7616 36 1 3.3529 3.0974 1.9052 37 1 4.8070 4.9526 2.3978 38 1 4.8226 5.5049 0.6896 39 1 6.1757 3.0368 1.9106 40 1 6.8839 4.2566 0.8097 41 1 8.0721 3.0167 -0.2178 42 1 8.4480 0.7065 -1.7980 43 1 8.3304 2.1138 -2.8816 44 1 11.4645 0.4672 -3.8965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426428326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:12 Heat of formation + Delta-G solvation = -75.059270 kcal Electronic energy + Delta-G solvation = -21359.790602 eV Core-core repulsion = 18310.239292 eV Total energy + Delta-G solvation = -3049.551310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50426 -39.19112 -36.81332 -36.11859 -34.41198 -32.97535 -32.34875 -29.28447 -28.80920 -27.41445 -25.35119 -24.18427 -22.99349 -22.33903 -20.94740 -20.28183 -19.05172 -17.98388 -17.60124 -16.86921 -16.45660 -16.32516 -15.87655 -15.26625 -15.11705 -14.88722 -14.45017 -14.14963 -14.06078 -13.91142 -13.68568 -13.57605 -13.03208 -12.93114 -12.82175 -12.71521 -12.61430 -12.37763 -12.23070 -12.07606 -11.92189 -11.68439 -11.49393 -11.42492 -11.28099 -11.23010 -10.93570 -10.81198 -10.01095 -9.32283 -8.29880 -6.47054 1.41678 1.45207 1.56166 1.79809 2.24574 2.37806 3.04739 3.26804 3.69763 3.73022 3.84074 4.03836 4.11559 4.18800 4.31627 4.41190 4.50159 4.56390 4.63764 4.71267 4.83610 4.89308 4.94733 4.97586 5.02609 5.05741 5.10866 5.11989 5.16906 5.23559 5.25125 5.28156 5.34393 5.42303 5.45886 5.51470 5.54741 5.66550 5.76482 5.84204 6.27654 6.64728 7.21223 7.23976 7.74049 8.82700 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.004072 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.169503 B = 6874.893398 C = 7574.707539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.104 4.104 5 H 0.035 0.965 6 C -0.132 4.132 7 C 0.153 3.847 8 H 0.048 0.952 9 C -0.117 4.117 10 C -0.119 4.119 11 C 0.088 3.912 12 N -0.632 5.632 13 C 0.705 3.295 14 O -0.645 6.645 15 N -0.725 5.725 16 C 0.289 3.711 17 C -0.555 4.555 18 H 0.082 0.918 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.988 3.012 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.255 1.255 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.401 0.599 42 H -0.018 1.018 43 H -0.018 1.018 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.343 7.444 15.224 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.124 4.124 5 H 0.053 0.947 6 C -0.189 4.189 7 C 0.049 3.951 8 H 0.066 0.934 9 C -0.155 4.155 10 C -0.157 4.157 11 C -0.034 4.034 12 N -0.370 5.370 13 C 0.407 3.593 14 O -0.528 6.528 15 N -0.379 5.379 16 C 0.166 3.834 17 C -0.593 4.593 18 H 0.100 0.900 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.811 3.189 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.179 1.179 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.236 0.764 42 H 0.000 1.000 43 H 0.000 1.000 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.528 6.800 14.387 23.674 hybrid contribution 1.363 -0.286 -0.601 1.517 sum -16.165 6.513 13.785 22.221 Atomic orbital electron populations 1.21739 0.94476 1.01882 1.02297 1.21567 0.96814 0.96895 1.01258 1.21559 0.92281 0.97126 1.02812 1.21451 0.96734 0.95944 0.98266 0.94659 1.21756 0.99753 1.00432 0.97009 1.21622 0.77883 0.96035 0.99560 0.93411 1.22807 0.98643 0.97422 0.96591 1.22751 0.92195 0.96692 1.04023 1.22573 0.99424 0.93735 0.87633 1.47660 1.06565 1.54605 1.28148 1.15872 0.81639 0.80249 0.81532 1.90811 1.76063 1.45455 1.40474 1.45357 1.03960 1.52763 1.35800 1.18365 0.88173 0.90443 0.86464 1.21571 0.90476 1.31085 1.16175 0.89995 1.26101 1.05152 0.94215 0.94142 1.70156 1.34943 1.32747 1.19110 0.85109 0.76701 0.79364 0.77735 1.19478 1.20814 1.17853 0.92904 0.92658 0.91343 0.94452 0.91636 0.89121 0.92526 0.95294 0.89688 0.93254 0.87984 0.88363 0.86748 0.90629 0.90712 0.91076 0.76393 1.00023 0.99976 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.13 -2.58 5.70 30.59 0.17 -2.41 16 3 C -0.10 -2.00 4.34 30.59 0.13 -1.87 16 4 C -0.10 -2.87 2.10 -10.79 -0.02 -2.90 16 5 H 0.03 1.37 6.72 -2.39 -0.02 1.35 16 6 C -0.13 -3.25 8.33 71.98 0.60 -2.65 16 7 C 0.15 4.08 2.71 45.34 0.12 4.20 16 8 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 9 C -0.12 -1.78 5.30 31.78 0.17 -1.61 16 10 C -0.12 -1.71 7.09 31.99 0.23 -1.48 16 11 C 0.09 1.99 6.61 86.86 0.57 2.56 16 12 N -0.63 -20.70 2.16 -805.88 -1.74 -22.44 16 13 C 0.71 32.37 8.31 179.05 1.49 33.86 16 14 O -0.65 -35.90 15.21 -3.99 -0.06 -35.96 16 15 N -0.72 -34.11 5.51 -482.28 -2.66 -36.77 16 16 C 0.29 16.92 5.43 85.63 0.46 17.38 16 17 C -0.56 -31.45 9.28 25.60 0.24 -31.21 16 18 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 19 C 0.00 0.19 5.46 84.65 0.46 0.66 16 20 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 21 Si 0.99 43.19 29.54 68.60 2.03 45.22 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.27 6.73 -2.38 -0.02 1.25 16 30 H 0.09 1.29 7.29 -2.38 -0.02 1.28 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 0.85 7.25 -2.38 -0.02 0.83 16 33 H 0.08 1.47 6.30 -2.39 -0.02 1.46 16 34 H 0.05 1.21 6.91 -2.39 -0.02 1.19 16 35 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.10 1.20 5.56 -2.39 -0.01 1.19 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 40 H 0.07 1.60 7.11 -2.39 -0.02 1.59 16 41 H 0.40 15.96 6.72 -92.71 -0.62 15.34 16 42 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 43 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 44 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -77.08 341.70 3.54 -73.55 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.34 Total: 20.85 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 5.34 Total: 12.99 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -4.11 Total: -116.64 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.06 Total: -35.96 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -77.08 3.54 -73.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.512 kcal (2) G-P(sol) polarization free energy of solvation -77.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds