Wall clock time and date at job start Mon Mar 30 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47611 * 2 1 4 4 C 1.52991 * 109.47612 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46943 * 54.35975 * 4 3 2 6 6 C 1.53003 * 109.47503 * 294.36170 * 4 3 2 7 7 C 1.52995 * 109.47456 * 174.35687 * 4 3 2 8 8 H 1.08999 * 109.87432 * 180.47992 * 7 4 3 9 9 C 1.54321 * 110.01249 * 59.38050 * 7 4 3 10 10 C 1.55159 * 102.94332 * 218.32098 * 9 7 4 11 11 C 1.54902 * 101.58166 * 35.49833 * 10 9 7 12 12 N 1.47019 * 109.88370 * 301.49343 * 7 4 3 13 13 C 1.34777 * 125.64936 * 298.54850 * 12 7 4 14 14 O 1.21583 * 120.00124 * 5.07667 * 13 12 7 15 15 N 1.34784 * 120.00102 * 185.07653 * 13 12 7 16 16 C 1.46494 * 119.99761 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46680 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00248 * 0.02562 * 17 16 15 19 19 C 1.37886 * 119.99860 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47096 * 59.99910 * 21 19 17 23 23 H 1.48496 * 109.47149 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47175 * 300.00230 * 21 19 17 25 25 H 1.08996 * 109.46930 * 299.99945 * 1 2 3 26 26 H 1.09000 * 109.47260 * 59.99340 * 1 2 3 27 27 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46764 * 240.00230 * 2 1 3 29 29 H 1.09000 * 109.47260 * 120.00660 * 2 1 3 30 30 H 1.09004 * 109.47232 * 60.00020 * 3 2 1 31 31 H 1.09000 * 109.47348 * 300.00606 * 3 2 1 32 32 H 1.09002 * 109.46443 * 299.99631 * 6 4 3 33 33 H 1.08996 * 109.46911 * 59.98929 * 6 4 3 34 34 H 1.08997 * 109.47458 * 180.02562 * 6 4 3 35 35 H 1.09009 * 110.71761 * 336.68239 * 9 7 4 36 36 H 1.08998 * 110.72188 * 99.95494 * 9 7 4 37 37 H 1.09005 * 111.00138 * 277.42043 * 10 9 7 38 38 H 1.09001 * 111.00497 * 153.57853 * 10 9 7 39 39 H 1.09003 * 110.36580 * 204.15066 * 11 10 9 40 40 H 1.08996 * 110.36523 * 81.83245 * 11 10 9 41 41 H 0.96997 * 120.00002 * 0.02562 * 15 13 12 42 42 H 1.09000 * 109.47533 * 300.00088 * 16 15 13 43 43 H 1.09000 * 109.47561 * 60.00617 * 16 15 13 44 44 H 0.96998 * 119.99831 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8437 -0.8361 6 6 4.0807 0.8472 1.3131 7 6 4.0800 2.8779 -0.1425 8 1 5.1700 2.8846 -0.1522 9 6 3.5603 3.7409 1.0265 10 6 3.2487 5.0991 0.3440 11 6 2.7343 4.6394 -1.0429 12 7 3.5653 3.4709 -1.3854 13 6 3.8116 3.0204 -2.6315 14 8 4.4370 1.9903 -2.7930 15 7 3.3648 3.7118 -3.6987 16 6 3.6331 3.2223 -5.0532 17 6 3.0314 4.1705 -6.0582 18 1 2.5025 5.0499 -5.7217 19 6 3.1562 3.9153 -7.4075 20 7 3.7998 2.8441 -7.8173 21 14 2.4111 5.0909 -8.6533 22 1 3.0143 6.4374 -8.4856 23 1 2.6818 4.5941 -10.0262 24 1 0.9441 5.1755 -8.4383 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.7177 1.4460 2.1485 33 1 3.7173 -0.1754 1.4141 34 1 5.1707 0.8476 1.3128 35 1 2.6559 3.3074 1.4535 36 1 4.3295 3.8602 1.7895 37 1 4.1509 5.7030 0.2457 38 1 2.4751 5.6412 0.8878 39 1 2.8708 5.4311 -1.7796 40 1 1.6842 4.3535 -0.9823 41 1 2.8662 4.5338 -3.5700 42 1 4.7099 3.1615 -5.2109 43 1 3.1914 2.2335 -5.1764 44 1 3.8873 2.6644 -8.7665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426428328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:15 Heat of formation + Delta-G solvation = -54.464173 kcal Electronic energy + Delta-G solvation = -21603.840466 eV Core-core repulsion = 18555.182227 eV Total energy + Delta-G solvation = -3048.658240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.15979 -37.67844 -35.63447 -34.08177 -32.57952 -31.97256 -31.07212 -27.90128 -26.97666 -26.50425 -23.84958 -22.46179 -21.89046 -21.41925 -19.59890 -18.78538 -17.63662 -16.25349 -15.96165 -15.43049 -15.10566 -14.64164 -14.32367 -14.22836 -13.71667 -13.53700 -13.15779 -12.96988 -12.79677 -12.58215 -12.15352 -12.08274 -11.90696 -11.75404 -11.63593 -11.40010 -11.19069 -11.01410 -10.93270 -10.87927 -10.81741 -10.39873 -10.27411 -10.24429 -10.08875 -9.34592 -9.21777 -8.68357 -8.26203 -7.64351 -6.11968 -4.18359 3.25106 3.27721 3.32771 3.35548 3.99388 4.34286 4.53581 4.59938 4.84749 4.92997 4.97124 5.05516 5.15309 5.23939 5.30804 5.36261 5.42086 5.49672 5.54534 5.62666 5.73350 5.74482 5.77232 5.88030 5.89773 5.95774 6.02695 6.09860 6.14871 6.22197 6.31024 6.36454 6.50740 6.57089 6.82112 7.27872 7.57347 7.61991 7.65164 7.95690 8.08722 8.80846 8.98333 9.39500 9.54446 10.98290 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.004595 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.587248 B = 6092.373936 C = 6542.312160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.144 4.144 7 C 0.165 3.835 8 H 0.067 0.933 9 C -0.131 4.131 10 C -0.132 4.132 11 C 0.102 3.898 12 N -0.639 5.639 13 C 0.712 3.288 14 O -0.595 6.595 15 N -0.729 5.729 16 C 0.268 3.732 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 1.521 19.976 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.126 4.126 5 H 0.109 0.891 6 C -0.201 4.201 7 C 0.060 3.940 8 H 0.085 0.915 9 C -0.169 4.169 10 C -0.170 4.170 11 C -0.022 4.022 12 N -0.379 5.379 13 C 0.414 3.586 14 O -0.474 6.474 15 N -0.381 5.381 16 C 0.147 3.853 17 C -0.580 4.580 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.217 0.783 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.577 0.611 19.510 19.845 hybrid contribution -0.634 1.030 -0.775 1.436 sum -4.211 1.641 18.735 19.273 Atomic orbital electron populations 1.21762 0.96296 1.01203 1.01549 1.21571 0.95404 0.97431 1.01886 1.21590 0.94923 0.96341 1.01578 1.21542 0.95649 0.96447 0.99006 0.89088 1.21839 1.00787 1.00669 0.96837 1.21291 0.97734 0.92290 0.82691 0.91510 1.22792 1.01963 0.95110 0.96989 1.22740 1.01658 0.97112 0.95459 1.22178 0.94889 0.88624 0.96526 1.47665 1.54312 1.31596 1.04352 1.15670 0.80332 0.83456 0.79146 1.90848 1.47059 1.25048 1.84445 1.45749 1.58693 1.27054 1.06619 1.18953 0.96784 0.95099 0.74465 1.21186 1.36668 1.09051 0.91048 0.92114 1.24935 0.95126 0.95549 0.98348 1.69970 1.40795 1.25796 1.15753 0.86483 0.79542 0.80844 0.80068 1.20108 1.21078 1.20114 0.93150 0.92753 0.93120 0.91981 0.92232 0.92505 0.91823 0.92913 0.92550 0.92902 0.90115 0.90535 0.90779 0.90291 0.91108 0.92006 0.78257 0.95845 0.95817 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.13 -1.51 5.70 -26.73 -0.15 -1.66 16 3 C -0.11 -1.35 4.22 -26.74 -0.11 -1.46 16 4 C -0.11 -1.45 2.10 -90.63 -0.19 -1.64 16 5 H 0.09 1.61 6.72 -51.93 -0.35 1.26 16 6 C -0.14 -1.52 8.73 37.16 0.32 -1.19 16 7 C 0.16 2.24 2.70 -66.96 -0.18 2.06 16 8 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 9 C -0.13 -1.25 5.21 -24.90 -0.13 -1.38 16 10 C -0.13 -1.22 7.08 -24.59 -0.17 -1.40 16 11 C 0.10 1.24 6.65 -2.53 -0.02 1.23 16 12 N -0.64 -10.31 2.17 -168.70 -0.37 -10.68 16 13 C 0.71 15.39 8.31 -86.91 -0.72 14.66 16 14 O -0.60 -15.19 15.20 5.29 0.08 -15.11 16 15 N -0.73 -16.34 5.51 -66.42 -0.37 -16.70 16 16 C 0.27 7.37 5.43 -5.20 -0.03 7.34 16 17 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 21 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.06 0.63 6.59 -51.93 -0.34 0.29 16 30 H 0.06 0.61 6.28 -51.93 -0.33 0.28 16 31 H 0.06 0.96 7.37 -51.93 -0.38 0.58 16 32 H 0.05 0.47 7.10 -51.93 -0.37 0.10 16 33 H 0.06 0.57 6.59 -51.93 -0.34 0.23 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.72 5.58 -51.92 -0.29 0.43 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.86 7.12 -51.93 -0.37 0.49 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.38 7.56 6.72 -40.82 -0.27 7.28 16 42 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -32.25 341.46 -8.87 -41.12 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.65 Total: 4.21 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.43 Total: 1.69 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.01 Total: -53.15 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.25 -8.87 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.342 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds