Wall clock time and date at job start Mon Mar 30 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 C 1.52993 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47094 * 55.00244 * 4 3 2 6 6 C 1.52995 * 109.47408 * 174.99853 * 4 3 2 7 7 C 1.52997 * 109.47678 * 184.99966 * 6 4 3 8 8 N 1.46499 * 109.47450 * 295.00175 * 4 3 2 9 9 C 1.34775 * 120.00515 * 154.99818 * 8 4 3 10 10 O 1.21595 * 119.99733 * 0.02562 * 9 8 4 11 11 N 1.34770 * 120.00256 * 180.02562 * 9 8 4 12 12 C 1.46504 * 120.00094 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47188 * 178.28291 * 12 11 9 14 14 C 1.50701 * 115.55004 * 65.14115 * 13 12 11 15 15 H 1.07997 * 119.99733 * 265.40503 * 14 13 12 16 16 C 1.37880 * 120.00177 * 85.40136 * 14 13 12 17 17 N 1.31515 * 120.00083 * 353.56131 * 16 14 13 18 18 Si 1.86795 * 119.99996 * 173.55490 * 16 14 13 19 19 H 1.48502 * 109.47421 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47161 * 120.00465 * 18 16 14 21 21 H 1.48502 * 109.47168 * 240.00504 * 18 16 14 22 22 C 1.52993 * 117.49927 * 279.46969 * 13 12 11 23 23 C 1.53001 * 117.49759 * 210.80536 * 13 12 11 24 24 H 1.08993 * 109.46962 * 299.99925 * 1 2 3 25 25 H 1.09004 * 109.46668 * 59.99999 * 1 2 3 26 26 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47073 * 239.99982 * 2 1 3 28 28 H 1.09002 * 109.47174 * 120.00097 * 2 1 3 29 29 H 1.09000 * 109.46733 * 59.99930 * 3 2 1 30 30 H 1.09002 * 109.47105 * 300.00139 * 3 2 1 31 31 H 1.09003 * 109.46878 * 64.99635 * 6 4 3 32 32 H 1.09007 * 109.47286 * 305.00447 * 6 4 3 33 33 H 1.08997 * 109.47078 * 300.00516 * 7 6 4 34 34 H 1.09003 * 109.47613 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46940 * 60.00336 * 7 6 4 36 36 H 0.96999 * 119.99723 * 335.00039 * 8 4 3 37 37 H 0.96999 * 119.99983 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.46641 * 298.28453 * 12 11 9 39 39 H 1.09000 * 109.47224 * 58.28103 * 12 11 9 40 40 H 0.96994 * 120.00399 * 185.05476 * 17 16 14 41 41 H 1.09003 * 117.49739 * 359.97438 * 22 13 12 42 42 H 1.08999 * 117.50252 * 145.02262 * 22 13 12 43 43 H 1.09000 * 117.50320 * 214.97671 * 23 13 12 44 44 H 1.08997 * 117.49659 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0801 2.8794 -0.1251 7 6 5.6050 2.8703 -0.2499 8 7 4.0579 0.8589 1.2527 9 6 5.2798 0.2923 1.3011 10 8 5.9775 0.2659 0.3056 11 7 5.7283 -0.2449 2.4528 12 6 7.0568 -0.8603 2.5055 13 6 7.3357 -1.3505 3.9277 14 6 6.4455 -2.4633 4.4180 15 1 5.5613 -2.2334 4.9939 16 6 6.7598 -3.7748 4.1313 17 7 7.7625 -4.0497 3.3258 18 14 5.7618 -5.1611 4.8870 19 1 4.6964 -4.5907 5.7501 20 1 5.1427 -5.9710 3.8073 21 1 6.6524 -6.0238 5.7042 22 6 7.8022 -0.3153 4.9531 23 6 8.7899 -1.3476 4.4035 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7913 3.4462 0.7600 32 1 3.6458 3.3430 -1.0110 33 1 6.0392 2.4068 0.6359 34 1 5.9684 3.8941 -0.3390 35 1 5.8937 2.3035 -1.1351 36 1 3.5014 0.8803 2.0469 37 1 5.1719 -0.2236 3.2470 38 1 7.0939 -1.7041 1.8165 39 1 7.8094 -0.1251 2.2204 40 1 7.9381 -4.9675 3.0658 41 1 7.9107 0.7151 4.6143 42 1 7.4655 -0.4391 5.9823 43 1 9.1026 -2.1502 5.0715 44 1 9.5478 -0.9968 3.7031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430449002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:17 Heat of formation + Delta-G solvation = -34.859131 kcal Electronic energy + Delta-G solvation = -21257.272648 eV Core-core repulsion = 18209.464546 eV Total energy + Delta-G solvation = -3047.808101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69500 -37.21979 -36.26595 -33.58694 -33.23927 -31.98245 -31.61847 -28.57512 -26.10402 -25.05125 -23.99066 -21.27553 -21.12064 -20.84089 -20.14469 -19.35339 -17.65391 -16.37442 -15.96977 -15.23277 -14.85186 -14.64561 -14.24107 -14.11627 -13.86759 -13.51768 -13.25255 -12.91321 -12.60891 -12.38706 -12.33480 -11.91299 -11.65094 -11.54124 -11.29330 -11.05597 -11.01633 -10.90400 -10.72829 -10.61778 -10.53319 -10.50907 -10.25027 -9.63826 -9.42919 -8.93321 -8.64516 -8.48428 -8.22583 -7.90706 -6.06419 -4.14713 3.25176 3.32263 3.34330 3.36120 3.89333 4.36033 4.58882 4.85626 4.93595 4.96882 5.21965 5.27087 5.31262 5.37174 5.41408 5.45055 5.66732 5.70169 5.74603 5.91308 6.00826 6.05977 6.06559 6.15140 6.18104 6.27453 6.36489 6.38566 6.50229 6.62885 6.70378 6.72682 6.90140 6.95822 7.11125 7.39495 7.46267 7.50973 7.67970 7.82948 8.36203 8.75352 8.86371 9.31123 9.51868 11.01528 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.005279 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.742542 B = 5302.589627 C = 6490.199801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.125 4.125 4 C 0.164 3.836 5 H 0.086 0.914 6 C -0.132 4.132 7 C -0.143 4.143 8 N -0.747 5.747 9 C 0.698 3.302 10 O -0.599 6.599 11 N -0.723 5.723 12 C 0.184 3.816 13 C 0.028 3.972 14 C -0.498 4.498 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.210 4.210 23 C -0.148 4.148 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.391 0.609 37 H 0.394 0.606 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 10.941 -4.382 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.163 4.163 4 C 0.058 3.942 5 H 0.104 0.896 6 C -0.171 4.171 7 C -0.200 4.200 8 N -0.404 5.404 9 C 0.398 3.602 10 O -0.478 6.478 11 N -0.375 5.375 12 C 0.060 3.940 13 C 0.027 3.973 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.227 0.773 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.041 10.723 -5.342 15.631 hybrid contribution -0.964 -0.867 1.127 1.718 sum -11.006 9.855 -4.215 15.363 Atomic orbital electron populations 1.21772 0.96077 1.01565 1.01439 1.21534 0.95394 0.96584 1.02864 1.21907 0.94371 0.97451 1.02585 1.20812 0.92371 0.93621 0.87426 0.89611 1.21967 0.97396 0.96533 1.01234 1.21775 0.94833 0.99760 1.03620 1.45182 1.17629 1.64262 1.13284 1.16015 0.81436 0.78465 0.84283 1.90874 1.57307 1.65011 1.34636 1.45159 1.20378 1.61301 1.10658 1.20806 0.79956 0.94838 0.98399 1.19057 0.94555 0.94631 0.89051 1.20359 1.09047 0.89265 1.34904 0.92248 1.24981 0.94635 0.98623 0.94790 1.69983 1.28482 1.19507 1.33044 0.86593 0.80083 0.82385 0.79256 1.19773 1.21076 1.20960 1.23011 1.08316 0.93850 0.99599 1.22487 0.93355 0.99810 1.02967 0.92890 0.92995 0.92837 0.91920 0.91468 0.91625 0.90776 0.92353 0.91868 0.91870 0.94390 0.92285 0.77604 0.77263 0.91318 0.94862 0.92915 0.91686 0.90457 0.89872 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.28 5.82 -26.73 -0.16 -1.44 16 3 C -0.13 -1.17 4.75 -26.73 -0.13 -1.29 16 4 C 0.16 2.01 2.26 -67.94 -0.15 1.86 16 5 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 6 C -0.13 -1.54 5.61 -26.73 -0.15 -1.69 16 7 C -0.14 -2.06 8.51 37.16 0.32 -1.74 16 8 N -0.75 -10.42 4.49 -58.68 -0.26 -10.68 16 9 C 0.70 13.06 7.13 -86.93 -0.62 12.44 16 10 O -0.60 -13.24 13.48 5.28 0.07 -13.17 16 11 N -0.72 -14.08 5.48 -65.22 -0.36 -14.44 16 12 C 0.18 4.22 5.50 -4.04 -0.02 4.19 16 13 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 14 C -0.50 -12.80 8.63 -34.44 -0.30 -13.09 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 17 N -0.87 -24.39 12.91 55.43 0.72 -23.68 16 18 Si 0.89 20.60 29.55 -169.99 -5.02 15.58 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 23 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.06 1.09 5.64 -51.93 -0.29 0.79 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 36 H 0.39 4.56 8.62 -40.82 -0.35 4.21 16 37 H 0.39 7.03 8.38 -40.82 -0.34 6.69 16 38 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 44 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -29.12 355.52 -9.24 -38.36 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.07 Total: 10.36 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.67 Total: -7.69 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.10 Total: -48.80 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.12 -9.24 -38.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430449002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.503 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds