Wall clock time and date at job start Mon Mar 30 2020 00:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 C 1.52993 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47094 * 55.00244 * 4 3 2 6 6 C 1.52995 * 109.47408 * 174.99853 * 4 3 2 7 7 C 1.52997 * 109.47678 * 184.99966 * 6 4 3 8 8 N 1.46499 * 109.47450 * 295.00175 * 4 3 2 9 9 C 1.34775 * 120.00515 * 154.99818 * 8 4 3 10 10 O 1.21595 * 119.99733 * 0.02562 * 9 8 4 11 11 N 1.34770 * 120.00256 * 180.02562 * 9 8 4 12 12 C 1.46504 * 120.00094 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47188 * 178.28291 * 12 11 9 14 14 C 1.50701 * 115.55004 * 65.14115 * 13 12 11 15 15 H 1.07997 * 119.99733 * 265.40503 * 14 13 12 16 16 C 1.37880 * 120.00177 * 85.40136 * 14 13 12 17 17 N 1.31515 * 120.00083 * 353.56131 * 16 14 13 18 18 Si 1.86795 * 119.99996 * 173.55490 * 16 14 13 19 19 H 1.48502 * 109.47421 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47161 * 120.00465 * 18 16 14 21 21 H 1.48502 * 109.47168 * 240.00504 * 18 16 14 22 22 C 1.52993 * 117.49927 * 279.46969 * 13 12 11 23 23 C 1.53001 * 117.49759 * 210.80536 * 13 12 11 24 24 H 1.08993 * 109.46962 * 299.99925 * 1 2 3 25 25 H 1.09004 * 109.46668 * 59.99999 * 1 2 3 26 26 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47073 * 239.99982 * 2 1 3 28 28 H 1.09002 * 109.47174 * 120.00097 * 2 1 3 29 29 H 1.09000 * 109.46733 * 59.99930 * 3 2 1 30 30 H 1.09002 * 109.47105 * 300.00139 * 3 2 1 31 31 H 1.09003 * 109.46878 * 64.99635 * 6 4 3 32 32 H 1.09007 * 109.47286 * 305.00447 * 6 4 3 33 33 H 1.08997 * 109.47078 * 300.00516 * 7 6 4 34 34 H 1.09003 * 109.47613 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46940 * 60.00336 * 7 6 4 36 36 H 0.96999 * 119.99723 * 335.00039 * 8 4 3 37 37 H 0.96999 * 119.99983 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.46641 * 298.28453 * 12 11 9 39 39 H 1.09000 * 109.47224 * 58.28103 * 12 11 9 40 40 H 0.96994 * 120.00399 * 185.05476 * 17 16 14 41 41 H 1.09003 * 117.49739 * 359.97438 * 22 13 12 42 42 H 1.08999 * 117.50252 * 145.02262 * 22 13 12 43 43 H 1.09000 * 117.50320 * 214.97671 * 23 13 12 44 44 H 1.08997 * 117.49659 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0801 2.8794 -0.1251 7 6 5.6050 2.8703 -0.2499 8 7 4.0579 0.8589 1.2527 9 6 5.2798 0.2923 1.3011 10 8 5.9775 0.2659 0.3056 11 7 5.7283 -0.2449 2.4528 12 6 7.0568 -0.8603 2.5055 13 6 7.3357 -1.3505 3.9277 14 6 6.4455 -2.4633 4.4180 15 1 5.5613 -2.2334 4.9939 16 6 6.7598 -3.7748 4.1313 17 7 7.7625 -4.0497 3.3258 18 14 5.7618 -5.1611 4.8870 19 1 4.6964 -4.5907 5.7501 20 1 5.1427 -5.9710 3.8073 21 1 6.6524 -6.0238 5.7042 22 6 7.8022 -0.3153 4.9531 23 6 8.7899 -1.3476 4.4035 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7913 3.4462 0.7600 32 1 3.6458 3.3430 -1.0110 33 1 6.0392 2.4068 0.6359 34 1 5.9684 3.8941 -0.3390 35 1 5.8937 2.3035 -1.1351 36 1 3.5014 0.8803 2.0469 37 1 5.1719 -0.2236 3.2470 38 1 7.0939 -1.7041 1.8165 39 1 7.8094 -0.1251 2.2204 40 1 7.9381 -4.9675 3.0658 41 1 7.9107 0.7151 4.6143 42 1 7.4655 -0.4391 5.9823 43 1 9.1026 -2.1502 5.0715 44 1 9.5478 -0.9968 3.7031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430449002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:16 Heat of formation + Delta-G solvation = -52.381131 kcal Electronic energy + Delta-G solvation = -21258.032458 eV Core-core repulsion = 18209.464546 eV Total energy + Delta-G solvation = -3048.567912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11277 -38.77993 -37.64820 -34.91308 -34.48418 -33.96759 -32.88387 -29.55776 -27.92138 -26.87986 -24.96162 -22.99196 -22.17873 -21.89471 -21.47435 -21.18888 -19.19161 -18.01723 -17.39034 -16.76222 -16.48891 -15.99349 -15.63396 -15.37331 -15.23687 -14.84867 -14.53204 -14.33874 -14.07942 -13.57661 -13.43846 -13.25431 -13.19761 -12.92600 -12.83990 -12.61471 -12.35137 -12.31169 -12.03504 -11.94061 -11.66894 -11.53369 -11.46582 -11.43092 -11.07441 -10.83399 -10.45575 -10.07498 -9.99278 -9.49603 -8.08810 -6.21645 1.40908 1.44462 1.53677 1.95450 2.38523 2.42949 3.19606 3.39043 3.66090 3.74162 4.08314 4.13535 4.27203 4.32161 4.41311 4.51332 4.58181 4.65027 4.67668 4.76702 4.81146 4.89026 4.92743 5.00045 5.01779 5.06870 5.09201 5.15746 5.27624 5.28573 5.31109 5.36732 5.50944 5.53303 5.61442 5.63153 5.75804 5.80162 5.83906 6.26373 6.38532 6.85560 7.35079 7.47626 7.82691 8.99091 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.005279 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.742542 B = 5302.589627 C = 6490.199801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.113 4.113 4 C 0.160 3.840 5 H 0.056 0.944 6 C -0.126 4.126 7 C -0.140 4.140 8 N -0.728 5.728 9 C 0.696 3.304 10 O -0.636 6.636 11 N -0.720 5.720 12 C 0.203 3.797 13 C 0.005 3.995 14 C -0.500 4.500 15 H 0.064 0.936 16 C 0.024 3.976 17 N -0.909 5.909 18 Si 0.949 3.051 19 H -0.261 1.261 20 H -0.289 1.289 21 H -0.285 1.285 22 C -0.175 4.175 23 C -0.160 4.160 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.031 0.969 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.406 0.594 37 H 0.404 0.596 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.258 0.742 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 12.778 -3.503 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.151 4.151 4 C 0.055 3.945 5 H 0.074 0.926 6 C -0.164 4.164 7 C -0.197 4.197 8 N -0.384 5.384 9 C 0.396 3.604 10 O -0.519 6.519 11 N -0.373 5.373 12 C 0.078 3.922 13 C 0.005 3.995 14 C -0.538 4.538 15 H 0.082 0.918 16 C -0.177 4.177 17 N -0.547 5.547 18 Si 0.776 3.224 19 H -0.184 1.184 20 H -0.215 1.215 21 H -0.211 1.211 22 C -0.212 4.212 23 C -0.198 4.198 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.241 0.759 37 H 0.239 0.761 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.553 12.591 -4.433 18.324 hybrid contribution -0.198 -1.396 0.809 1.626 sum -12.751 11.195 -3.623 17.350 Atomic orbital electron populations 1.21735 0.94497 1.01681 1.02520 1.21531 0.96773 0.96974 1.01315 1.21853 0.91454 0.97157 1.04592 1.20991 0.94554 0.93580 0.85402 0.92571 1.21940 0.95126 0.96068 1.03279 1.21709 0.97140 0.99926 1.00945 1.45060 1.15862 1.62808 1.14689 1.16170 0.82486 0.78413 0.83353 1.90853 1.58783 1.66374 1.35848 1.44931 1.19491 1.61382 1.11497 1.20313 0.81668 0.93138 0.97083 1.19078 0.94685 0.95868 0.89906 1.20668 1.09171 0.89888 1.34064 0.91818 1.25706 0.95709 1.01009 0.95248 1.70114 1.30266 1.19623 1.34686 0.85644 0.78910 0.79573 0.78317 1.18440 1.21520 1.21089 1.22988 1.04991 0.94044 0.99145 1.22427 0.93516 1.00572 1.03306 0.91845 0.91827 0.93305 0.93509 0.93129 0.89573 0.88647 0.90615 0.89246 0.94984 0.92710 0.94632 0.75855 0.76114 0.95905 0.95289 0.93290 0.89462 0.89495 0.91798 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.13 -2.40 5.82 30.60 0.18 -2.22 16 3 C -0.11 -1.76 4.75 30.59 0.15 -1.61 16 4 C 0.16 3.69 2.26 44.99 0.10 3.79 16 5 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 6 C -0.13 -2.60 5.61 30.59 0.17 -2.43 16 7 C -0.14 -3.95 8.51 71.98 0.61 -3.34 16 8 N -0.73 -19.53 4.49 -457.83 -2.05 -21.58 16 9 C 0.70 26.27 7.13 179.06 1.28 27.54 16 10 O -0.64 -29.16 13.48 -4.02 -0.05 -29.22 16 11 N -0.72 -28.12 5.48 -478.53 -2.62 -30.74 16 12 C 0.20 9.55 5.50 86.38 0.48 10.03 16 13 C 0.01 0.26 1.38 -52.93 -0.07 0.18 16 14 C -0.50 -25.58 8.63 25.60 0.22 -25.36 16 15 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 16 C 0.02 1.27 5.39 84.66 0.46 1.72 16 17 N -0.91 -52.09 12.91 21.45 0.28 -51.81 16 18 Si 0.95 42.44 29.55 68.60 2.03 44.47 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 C -0.17 -6.97 9.96 30.62 0.30 -6.66 16 23 C -0.16 -7.37 9.42 30.62 0.29 -7.08 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.03 1.09 5.64 -2.39 -0.01 1.08 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.03 1.14 7.84 -2.38 -0.02 1.12 16 36 H 0.41 8.60 8.62 -92.71 -0.80 7.80 16 37 H 0.40 14.01 8.38 -92.71 -0.78 13.24 16 38 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16 40 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 41 H 0.09 3.11 8.14 -2.39 -0.02 3.10 16 42 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -64.91 355.52 1.84 -63.07 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: -0.61 Total: 32.70 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 4.87 Total: -6.89 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.40 Total: -104.13 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.22 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.91 1.84 -63.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430449002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.693 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds