Wall clock time and date at job start Mon Mar 30 2020 00:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 C 1.53001 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46964 * 305.00099 * 4 3 2 6 6 C 1.52998 * 109.47410 * 184.99931 * 4 3 2 7 7 C 1.52998 * 109.47396 * 174.99961 * 6 4 3 8 8 N 1.46506 * 109.47109 * 64.99992 * 4 3 2 9 9 C 1.34770 * 120.00062 * 205.00201 * 8 4 3 10 10 O 1.21589 * 120.00353 * 355.60927 * 9 8 4 11 11 N 1.34777 * 119.99988 * 175.61117 * 9 8 4 12 12 C 1.46501 * 119.99798 * 184.96774 * 11 9 8 13 13 C 1.53001 * 109.46773 * 185.00969 * 12 11 9 14 14 C 1.50703 * 115.55131 * 55.68524 * 13 12 11 15 15 H 1.07994 * 119.99851 * 267.37946 * 14 13 12 16 16 C 1.37879 * 119.99885 * 87.37828 * 14 13 12 17 17 N 1.31522 * 119.99713 * 179.20303 * 16 14 13 18 18 Si 1.86793 * 120.00218 * 359.20272 * 16 14 13 19 19 H 1.48499 * 109.47292 * 91.56954 * 18 16 14 20 20 H 1.48502 * 109.47130 * 211.56581 * 18 16 14 21 21 H 1.48501 * 109.47440 * 331.56445 * 18 16 14 22 22 C 1.52993 * 117.50206 * 270.01209 * 13 12 11 23 23 C 1.52999 * 117.49774 * 201.35201 * 13 12 11 24 24 H 1.08998 * 109.47654 * 299.99824 * 1 2 3 25 25 H 1.09000 * 109.47313 * 60.00248 * 1 2 3 26 26 H 1.09004 * 109.46551 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47676 * 239.99670 * 2 1 3 28 28 H 1.09009 * 109.47090 * 119.99807 * 2 1 3 29 29 H 1.09004 * 109.47092 * 59.99924 * 3 2 1 30 30 H 1.08997 * 109.47364 * 300.00021 * 3 2 1 31 31 H 1.09000 * 109.47000 * 295.00477 * 6 4 3 32 32 H 1.09003 * 109.46769 * 54.99848 * 6 4 3 33 33 H 1.09003 * 109.47254 * 60.00184 * 7 6 4 34 34 H 1.08998 * 109.47370 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47468 * 300.00230 * 7 6 4 36 36 H 0.96998 * 119.99498 * 25.00209 * 8 4 3 37 37 H 0.96993 * 120.00084 * 4.96211 * 11 9 8 38 38 H 1.09003 * 109.47085 * 305.00350 * 12 11 9 39 39 H 1.08991 * 109.47407 * 65.00980 * 12 11 9 40 40 H 0.96995 * 120.00031 * 179.97438 * 17 16 14 41 41 H 1.09005 * 117.49591 * 0.02562 * 22 13 12 42 42 H 1.08997 * 117.50454 * 145.02071 * 22 13 12 43 43 H 1.09002 * 117.49902 * 214.98323 * 23 13 12 44 44 H 1.09001 * 117.50058 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0799 2.8796 0.1263 7 6 5.6046 2.8705 0.2524 8 7 4.0588 0.8586 -1.2509 9 6 5.2808 0.2921 -1.2981 10 8 6.0092 0.3359 -0.3255 11 7 5.6954 -0.3230 -2.4234 12 6 6.9771 -1.0324 -2.4406 13 6 7.2659 -1.5292 -3.8586 14 6 7.2585 -0.4714 -4.9320 15 1 6.3518 -0.2661 -5.4815 16 6 8.4094 0.2342 -5.2125 17 7 8.4070 1.1464 -6.1600 18 14 9.9719 -0.1054 -4.2468 19 1 10.7722 -1.1410 -4.9483 20 1 10.7670 1.1440 -4.1365 21 1 9.6187 -0.5889 -2.8878 22 6 6.7585 -2.9223 -4.2362 23 6 8.2545 -2.6864 -4.0140 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.7918 3.4461 -0.7592 32 1 3.6448 3.3433 1.0117 33 1 6.0397 2.4068 -0.6330 34 1 5.9679 3.8942 0.3424 35 1 5.8927 2.3040 1.1379 36 1 3.5030 0.8798 -2.0456 37 1 5.1452 -0.2960 -3.2217 38 1 7.7710 -0.3560 -2.1239 39 1 6.9310 -1.8826 -1.7602 40 1 9.2165 1.6430 -6.3570 41 1 6.2185 -3.4848 -3.4745 42 1 6.4197 -3.0739 -5.2610 43 1 8.8994 -2.6829 -4.8929 44 1 8.6995 -3.0936 -3.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430449003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:19 Heat of formation + Delta-G solvation = -29.321598 kcal Electronic energy + Delta-G solvation = -21366.221366 eV Core-core repulsion = 18318.653390 eV Total energy + Delta-G solvation = -3047.567976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77838 -37.46957 -36.45989 -33.64540 -33.35734 -32.12293 -31.67273 -28.60540 -26.43130 -25.08760 -23.99616 -21.74256 -21.16262 -20.96110 -20.20433 -19.27568 -17.67894 -16.56020 -16.07713 -15.35236 -15.04089 -14.81462 -14.29685 -14.18386 -13.85088 -13.61022 -13.10837 -12.99161 -12.76213 -12.47796 -12.38102 -12.34059 -12.01084 -11.78667 -11.30489 -11.15140 -11.06830 -10.79073 -10.73169 -10.57908 -10.51209 -10.49443 -10.15341 -9.69656 -9.50210 -9.14889 -8.69690 -8.60587 -8.57213 -8.04069 -6.14867 -4.19245 3.23726 3.30638 3.40854 3.47231 3.79907 4.41890 4.55385 4.69647 4.87368 4.89640 5.05632 5.16648 5.25894 5.31222 5.37351 5.45241 5.64257 5.67623 5.72537 5.74936 5.87358 5.96880 6.03510 6.06990 6.09457 6.13066 6.21401 6.24003 6.30353 6.43557 6.44199 6.54462 6.72346 6.81771 6.91573 7.01976 7.10162 7.29720 7.54439 7.69827 8.41704 8.66788 8.84517 9.21883 9.48823 10.96415 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021134 B = 0.005041 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.538087 B = 5553.033849 C = 6112.971182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.126 4.126 4 C 0.165 3.835 5 H 0.084 0.916 6 C -0.133 4.133 7 C -0.144 4.144 8 N -0.745 5.745 9 C 0.700 3.300 10 O -0.599 6.599 11 N -0.719 5.719 12 C 0.175 3.825 13 C -0.015 4.015 14 C -0.488 4.488 15 H 0.077 0.923 16 C 0.081 3.919 17 N -0.896 5.896 18 Si 0.879 3.121 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.255 1.255 22 C -0.179 4.179 23 C -0.194 4.194 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.400 0.600 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.265 0.735 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -0.792 10.761 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.165 4.165 4 C 0.059 3.941 5 H 0.102 0.898 6 C -0.172 4.172 7 C -0.201 4.201 8 N -0.402 5.402 9 C 0.400 3.600 10 O -0.479 6.479 11 N -0.372 5.372 12 C 0.051 3.949 13 C -0.017 4.017 14 C -0.525 4.525 15 H 0.095 0.905 16 C -0.122 4.122 17 N -0.533 5.533 18 Si 0.707 3.293 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.180 1.180 22 C -0.216 4.216 23 C -0.231 4.231 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.226 0.774 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.869 -0.652 11.565 16.585 hybrid contribution 0.486 -0.009 -0.437 0.654 sum -11.383 -0.662 11.128 15.933 Atomic orbital electron populations 1.21778 0.96035 1.01510 1.01599 1.21521 0.95441 0.96665 1.02588 1.21922 0.94360 0.97386 1.02783 1.20823 0.92312 0.93832 0.87088 0.89787 1.21975 0.97554 0.96389 1.01306 1.21812 0.94692 0.99812 1.03780 1.45162 1.17590 1.64009 1.13402 1.15973 0.81618 0.78447 0.83988 1.90871 1.55030 1.65608 1.36372 1.44972 1.23450 1.56481 1.12333 1.20923 0.83899 0.94135 0.95939 1.19640 0.99851 0.88547 0.93630 1.20140 0.98244 1.17336 1.16803 0.90507 1.24953 0.98848 0.94158 0.94251 1.69886 1.28877 1.23923 1.30603 0.86865 0.83236 0.77261 0.81966 1.20525 1.22127 1.17959 1.22859 0.95932 1.01692 1.01149 1.22932 0.92745 1.05728 1.01738 0.92946 0.92780 0.92894 0.91608 0.92043 0.90704 0.91446 0.92177 0.91945 0.91382 0.94434 0.92495 0.77389 0.76624 0.91937 0.94383 0.92534 0.90926 0.89513 0.89224 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.13 5.82 -26.73 -0.16 -1.29 16 3 C -0.13 -1.14 4.75 -26.73 -0.13 -1.26 16 4 C 0.17 2.01 2.25 -67.93 -0.15 1.85 16 5 H 0.08 1.18 7.64 -51.93 -0.40 0.78 16 6 C -0.13 -1.65 5.61 -26.73 -0.15 -1.80 16 7 C -0.14 -2.24 8.46 37.16 0.31 -1.93 16 8 N -0.75 -10.31 4.49 -58.67 -0.26 -10.58 16 9 C 0.70 12.78 7.28 -86.92 -0.63 12.15 16 10 O -0.60 -12.79 13.13 5.29 0.07 -12.72 16 11 N -0.72 -13.63 5.36 -65.23 -0.35 -13.98 16 12 C 0.18 3.73 5.35 -4.04 -0.02 3.70 16 13 C -0.02 -0.34 0.93 -155.66 -0.14 -0.48 16 14 C -0.49 -12.75 8.87 -34.44 -0.31 -13.05 16 15 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 17 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 18 Si 0.88 21.65 24.90 -169.99 -4.23 17.42 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.26 -6.08 5.59 56.52 0.32 -5.77 16 22 C -0.18 -3.44 9.93 -26.70 -0.27 -3.70 16 23 C -0.19 -3.98 7.57 -26.70 -0.20 -4.19 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 28 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.29 5.54 -51.93 -0.29 1.00 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.93 7.80 -51.93 -0.40 0.53 16 36 H 0.39 4.62 8.62 -40.82 -0.35 4.27 16 37 H 0.40 7.11 8.18 -40.82 -0.33 6.77 16 38 H 0.06 1.49 6.47 -51.93 -0.34 1.16 16 39 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 43 H 0.09 1.94 7.19 -51.93 -0.37 1.56 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -30.17 345.22 -8.40 -38.57 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.02 Total: 10.49 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.57 Total: -8.65 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.16 Total: -50.32 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.23 Total: 17.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.17 -8.40 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430449003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.249 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds