Wall clock time and date at job start Mon Mar 30 2020 00:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 C 1.53001 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46964 * 305.00099 * 4 3 2 6 6 C 1.52998 * 109.47410 * 184.99931 * 4 3 2 7 7 C 1.52998 * 109.47396 * 174.99961 * 6 4 3 8 8 N 1.46506 * 109.47109 * 64.99992 * 4 3 2 9 9 C 1.34770 * 120.00062 * 205.00201 * 8 4 3 10 10 O 1.21589 * 120.00353 * 355.60927 * 9 8 4 11 11 N 1.34777 * 119.99988 * 175.61117 * 9 8 4 12 12 C 1.46501 * 119.99798 * 184.96774 * 11 9 8 13 13 C 1.53001 * 109.46773 * 185.00969 * 12 11 9 14 14 C 1.50703 * 115.55131 * 55.68524 * 13 12 11 15 15 H 1.07994 * 119.99851 * 267.37946 * 14 13 12 16 16 C 1.37879 * 119.99885 * 87.37828 * 14 13 12 17 17 N 1.31522 * 119.99713 * 179.20303 * 16 14 13 18 18 Si 1.86793 * 120.00218 * 359.20272 * 16 14 13 19 19 H 1.48499 * 109.47292 * 91.56954 * 18 16 14 20 20 H 1.48502 * 109.47130 * 211.56581 * 18 16 14 21 21 H 1.48501 * 109.47440 * 331.56445 * 18 16 14 22 22 C 1.52993 * 117.50206 * 270.01209 * 13 12 11 23 23 C 1.52999 * 117.49774 * 201.35201 * 13 12 11 24 24 H 1.08998 * 109.47654 * 299.99824 * 1 2 3 25 25 H 1.09000 * 109.47313 * 60.00248 * 1 2 3 26 26 H 1.09004 * 109.46551 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47676 * 239.99670 * 2 1 3 28 28 H 1.09009 * 109.47090 * 119.99807 * 2 1 3 29 29 H 1.09004 * 109.47092 * 59.99924 * 3 2 1 30 30 H 1.08997 * 109.47364 * 300.00021 * 3 2 1 31 31 H 1.09000 * 109.47000 * 295.00477 * 6 4 3 32 32 H 1.09003 * 109.46769 * 54.99848 * 6 4 3 33 33 H 1.09003 * 109.47254 * 60.00184 * 7 6 4 34 34 H 1.08998 * 109.47370 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47468 * 300.00230 * 7 6 4 36 36 H 0.96998 * 119.99498 * 25.00209 * 8 4 3 37 37 H 0.96993 * 120.00084 * 4.96211 * 11 9 8 38 38 H 1.09003 * 109.47085 * 305.00350 * 12 11 9 39 39 H 1.08991 * 109.47407 * 65.00980 * 12 11 9 40 40 H 0.96995 * 120.00031 * 179.97438 * 17 16 14 41 41 H 1.09005 * 117.49591 * 0.02562 * 22 13 12 42 42 H 1.08997 * 117.50454 * 145.02071 * 22 13 12 43 43 H 1.09002 * 117.49902 * 214.98323 * 23 13 12 44 44 H 1.09001 * 117.50058 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0799 2.8796 0.1263 7 6 5.6046 2.8705 0.2524 8 7 4.0588 0.8586 -1.2509 9 6 5.2808 0.2921 -1.2981 10 8 6.0092 0.3359 -0.3255 11 7 5.6954 -0.3230 -2.4234 12 6 6.9771 -1.0324 -2.4406 13 6 7.2659 -1.5292 -3.8586 14 6 7.2585 -0.4714 -4.9320 15 1 6.3518 -0.2661 -5.4815 16 6 8.4094 0.2342 -5.2125 17 7 8.4070 1.1464 -6.1600 18 14 9.9719 -0.1054 -4.2468 19 1 10.7722 -1.1410 -4.9483 20 1 10.7670 1.1440 -4.1365 21 1 9.6187 -0.5889 -2.8878 22 6 6.7585 -2.9223 -4.2362 23 6 8.2545 -2.6864 -4.0140 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.7918 3.4461 -0.7592 32 1 3.6448 3.3433 1.0117 33 1 6.0397 2.4068 -0.6330 34 1 5.9679 3.8942 0.3424 35 1 5.8927 2.3040 1.1379 36 1 3.5030 0.8798 -2.0456 37 1 5.1452 -0.2960 -3.2217 38 1 7.7710 -0.3560 -2.1239 39 1 6.9310 -1.8826 -1.7602 40 1 9.2165 1.6430 -6.3570 41 1 6.2185 -3.4848 -3.4745 42 1 6.4197 -3.0739 -5.2610 43 1 8.8994 -2.6829 -4.8929 44 1 8.6995 -3.0936 -3.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430449003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:19 Heat of formation + Delta-G solvation = -49.087796 kcal Electronic energy + Delta-G solvation = -21367.078493 eV Core-core repulsion = 18318.653390 eV Total energy + Delta-G solvation = -3048.425103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14886 -39.00609 -37.70400 -34.96553 -34.47014 -34.21107 -32.92514 -29.57287 -28.17809 -26.88961 -24.96611 -23.34790 -22.23750 -21.88579 -21.47143 -21.06053 -19.18122 -18.28016 -17.43874 -16.90185 -16.65754 -15.98377 -15.57775 -15.41091 -15.07729 -14.96120 -14.73321 -14.44829 -14.14024 -14.11573 -13.66994 -13.25738 -13.20430 -13.09077 -12.67585 -12.57165 -12.37399 -12.16536 -11.98874 -11.92664 -11.66869 -11.56201 -11.52024 -11.43177 -11.10552 -10.95719 -10.63625 -10.35011 -10.00751 -9.51416 -8.29578 -6.34708 1.32485 1.39337 1.49562 1.92978 2.34801 2.36842 3.06587 3.17130 3.58973 3.72695 4.06554 4.08802 4.14009 4.31361 4.38836 4.40812 4.43230 4.50653 4.59475 4.64661 4.81366 4.82798 4.88153 4.90836 4.93815 5.03808 5.06747 5.11545 5.14893 5.27788 5.30974 5.32253 5.37777 5.50370 5.51657 5.52793 5.69666 5.75563 5.80896 6.22112 6.29834 6.73225 7.29719 7.35819 7.79014 8.84941 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021134 B = 0.005041 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.538087 B = 5553.033849 C = 6112.971182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.163 3.837 5 H 0.065 0.935 6 C -0.129 4.129 7 C -0.140 4.140 8 N -0.730 5.730 9 C 0.697 3.303 10 O -0.631 6.631 11 N -0.722 5.722 12 C 0.186 3.814 13 C -0.040 4.040 14 C -0.472 4.472 15 H 0.047 0.953 16 C 0.028 3.972 17 N -0.944 5.944 18 Si 0.926 3.074 19 H -0.267 1.267 20 H -0.306 1.306 21 H -0.243 1.243 22 C -0.151 4.151 23 C -0.194 4.194 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.405 0.595 37 H 0.404 0.596 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.263 0.737 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 -1.647 12.129 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.153 4.153 4 C 0.058 3.942 5 H 0.083 0.917 6 C -0.167 4.167 7 C -0.198 4.198 8 N -0.386 5.386 9 C 0.397 3.603 10 O -0.514 6.514 11 N -0.375 5.375 12 C 0.061 3.939 13 C -0.042 4.042 14 C -0.510 4.510 15 H 0.065 0.935 16 C -0.170 4.170 17 N -0.584 5.584 18 Si 0.752 3.248 19 H -0.192 1.192 20 H -0.233 1.233 21 H -0.166 1.166 22 C -0.188 4.188 23 C -0.231 4.231 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.240 0.760 37 H 0.239 0.761 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.534 -1.522 12.933 18.781 hybrid contribution 0.902 0.264 -0.858 1.273 sum -12.632 -1.258 12.075 17.520 Atomic orbital electron populations 1.21745 0.94716 1.01817 1.02309 1.21503 0.96555 0.96492 1.01655 1.21868 0.91388 0.97702 1.04346 1.20984 0.94538 0.93213 0.85435 0.91693 1.21970 0.95073 0.96724 1.02980 1.21737 0.97218 0.99624 1.01185 1.45102 1.16095 1.62683 1.14693 1.16134 0.82529 0.78452 0.83233 1.90848 1.56304 1.66800 1.37413 1.44901 1.22938 1.56806 1.12867 1.20654 0.83953 0.93961 0.95334 1.19490 1.03093 0.88759 0.92814 1.20310 0.96593 1.17481 1.16589 0.93491 1.25645 1.01811 0.94344 0.95160 1.70009 1.29557 1.25881 1.32945 0.86095 0.80216 0.76890 0.81569 1.19199 1.23331 1.16616 1.22888 0.95163 0.98750 1.01994 1.22996 0.93473 1.04344 1.02331 0.92034 0.92249 0.92875 0.92733 0.92885 0.88723 0.90190 0.91477 0.89089 0.95162 0.93477 0.93906 0.75982 0.76081 0.95102 0.92895 0.92799 0.87882 0.89624 0.90406 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.99 5.82 30.59 0.18 -1.81 16 3 C -0.12 -1.74 4.75 30.59 0.15 -1.59 16 4 C 0.16 3.71 2.25 44.99 0.10 3.81 16 5 H 0.06 1.77 7.64 -2.39 -0.02 1.75 16 6 C -0.13 -2.94 5.61 30.59 0.17 -2.77 16 7 C -0.14 -4.36 8.46 71.98 0.61 -3.75 16 8 N -0.73 -19.52 4.49 -457.81 -2.05 -21.57 16 9 C 0.70 25.35 7.28 179.06 1.30 26.65 16 10 O -0.63 -27.26 13.13 -3.99 -0.05 -27.31 16 11 N -0.72 -27.09 5.36 -478.54 -2.57 -29.66 16 12 C 0.19 7.75 5.35 86.38 0.46 8.21 16 13 C -0.04 -1.73 0.93 -52.93 -0.05 -1.78 16 14 C -0.47 -24.90 8.87 25.60 0.23 -24.67 16 15 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 16 C 0.03 1.60 5.47 84.65 0.46 2.06 16 17 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 18 Si 0.93 44.90 24.90 68.60 1.71 46.61 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 21 H -0.24 -11.18 5.59 99.48 0.56 -10.63 16 22 C -0.15 -5.36 9.93 30.61 0.30 -5.06 16 23 C -0.19 -7.49 7.57 30.62 0.23 -7.26 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 28 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.15 5.54 -2.39 -0.01 1.14 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 1.41 7.80 -2.39 -0.02 1.39 16 36 H 0.40 8.96 8.62 -92.71 -0.80 8.16 16 37 H 0.40 14.23 8.18 -92.71 -0.76 13.47 16 38 H 0.03 1.47 6.47 -2.39 -0.02 1.45 16 39 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 42 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.08 3.21 7.19 -2.39 -0.02 3.19 16 44 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -66.95 345.22 1.46 -65.49 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.74 Total: 32.85 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.86 Total: -9.15 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.32 Total: -108.48 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.71 Total: 46.61 kcal Total: -66.95 1.46 -65.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430449003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.401 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds