Wall clock time and date at job start Mon Mar 30 2020 01:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47185 * 2 1 4 4 C 1.52999 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46874 * 179.97438 * 4 3 2 6 6 C 1.46494 * 119.99925 * 270.00431 * 5 4 3 7 7 C 1.53002 * 109.46914 * 273.18093 * 6 5 4 8 8 C 1.34776 * 119.99654 * 90.00148 * 5 4 3 9 9 O 1.21583 * 120.00278 * 354.15979 * 8 5 4 10 10 N 1.34781 * 119.99526 * 174.43480 * 8 5 4 11 11 C 1.46503 * 119.99793 * 184.55181 * 10 8 5 12 12 C 1.53001 * 109.46924 * 175.02314 * 11 10 8 13 13 C 1.50688 * 115.55004 * 306.47718 * 12 11 10 14 14 H 1.08002 * 119.99872 * 144.20698 * 13 12 11 15 15 C 1.37877 * 120.00386 * 324.20559 * 13 12 11 16 16 N 1.31506 * 120.00044 * 3.29816 * 15 13 12 17 17 Si 1.86804 * 120.00056 * 183.30183 * 15 13 12 18 18 H 1.48496 * 109.47113 * 90.00141 * 17 15 13 19 19 H 1.48501 * 109.46997 * 209.99876 * 17 15 13 20 20 H 1.48502 * 109.47125 * 329.99516 * 17 15 13 21 21 C 1.52997 * 117.49565 * 160.80799 * 12 11 10 22 22 C 1.53001 * 117.49327 * 92.15038 * 12 11 10 23 23 H 1.08998 * 109.47372 * 60.00301 * 1 2 3 24 24 H 1.09006 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47536 * 300.00206 * 1 2 3 26 26 H 1.08997 * 109.47536 * 239.99794 * 2 1 3 27 27 H 1.08997 * 109.46920 * 119.99420 * 2 1 3 28 28 H 1.09002 * 109.46833 * 59.99934 * 3 2 1 29 29 H 1.08998 * 109.46720 * 300.00098 * 3 2 1 30 30 H 1.09002 * 109.47068 * 60.00431 * 4 3 2 31 31 H 1.08998 * 109.47007 * 300.00033 * 4 3 2 32 32 H 1.09000 * 109.47905 * 33.18109 * 6 5 4 33 33 H 1.08998 * 109.47291 * 153.18630 * 6 5 4 34 34 H 1.08995 * 109.47459 * 300.00319 * 7 6 5 35 35 H 1.09001 * 109.47178 * 60.00771 * 7 6 5 36 36 H 1.09005 * 109.47108 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00140 * 4.55403 * 10 8 5 38 38 H 1.08998 * 109.46863 * 295.02720 * 11 10 8 39 39 H 1.08999 * 109.46598 * 55.02341 * 11 10 8 40 40 H 0.97001 * 120.00367 * 185.00880 * 16 15 13 41 41 H 1.09004 * 117.50001 * 359.97438 * 21 12 11 42 42 H 1.09002 * 117.50109 * 145.02035 * 21 12 11 43 43 H 1.09007 * 117.49195 * 214.97449 * 22 12 11 44 44 H 1.08995 * 117.50437 * 359.97228 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3029 3.5136 -1.2690 7 6 5.7229 3.2083 -1.7500 8 6 4.2824 3.4597 1.1670 9 8 3.9800 2.9274 2.2174 10 7 4.8368 4.6883 1.1692 11 6 5.1723 5.3382 2.4386 12 6 5.8957 6.6574 2.1605 13 6 7.1014 6.5606 1.2619 14 1 7.3220 7.3571 0.5666 15 6 7.9231 5.4554 1.3273 16 7 7.6193 4.4565 2.1269 17 14 9.4680 5.3768 0.2801 18 1 10.6071 5.9594 1.0339 19 1 9.7680 3.9613 -0.0541 20 1 9.2571 6.1470 -0.9719 21 6 5.9350 7.6924 3.2866 22 6 5.0428 7.9240 2.0646 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5137 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9286 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 3.5852 3.1698 -2.0138 33 1 4.1911 4.5884 -1.1257 34 1 6.4406 3.5522 -1.0052 35 1 5.8348 2.1336 -1.8933 36 1 5.9051 3.7220 -2.6940 37 1 5.0136 5.1421 0.3304 38 1 4.2581 5.5359 2.9983 39 1 5.8208 4.6840 3.0213 40 1 8.2329 3.7121 2.2280 41 1 5.4453 7.4336 4.2254 42 1 6.8330 8.3036 3.3773 43 1 5.3542 8.6875 1.3517 44 1 3.9664 7.8174 2.1991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431060775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:45 Heat of formation + Delta-G solvation = -18.549073 kcal Electronic energy + Delta-G solvation = -21761.990950 eV Core-core repulsion = 18714.890105 eV Total energy + Delta-G solvation = -3047.100844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.43628 -36.91399 -35.79026 -34.55981 -32.81255 -32.11689 -30.49070 -28.37212 -25.87857 -25.17278 -23.42743 -22.57949 -21.21633 -21.00271 -19.21678 -18.73958 -17.49016 -16.23408 -15.66432 -15.21022 -14.93039 -14.62402 -13.95092 -13.75499 -13.59619 -13.44596 -13.18038 -12.82407 -12.71590 -12.35122 -12.15451 -11.74016 -11.56964 -11.42332 -11.16001 -11.12083 -11.07029 -10.94387 -10.76927 -10.68997 -10.50530 -10.40026 -10.21177 -9.66353 -9.16248 -8.92017 -8.79710 -8.26504 -8.18457 -7.55524 -5.96429 -4.15946 3.21612 3.31004 3.31592 3.41309 4.16551 4.30933 4.77713 4.99479 5.00313 5.09932 5.17803 5.26049 5.41941 5.51437 5.53458 5.65292 5.72683 5.81407 5.83379 5.86600 6.03022 6.06310 6.07943 6.14436 6.18643 6.34849 6.37933 6.48878 6.57897 6.62761 6.65038 6.79523 6.92687 7.03930 7.20277 7.29201 7.60548 7.74815 7.87818 8.04162 8.35476 8.80980 9.05049 9.47074 9.61918 10.93138 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.005743 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.867893 B = 4874.656065 C = 5622.200156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.139 3.861 5 N -0.638 5.638 6 C 0.114 3.886 7 C -0.174 4.174 8 C 0.705 3.295 9 O -0.607 6.607 10 N -0.700 5.700 11 C 0.184 3.816 12 C 0.037 3.963 13 C -0.497 4.497 14 H 0.059 0.941 15 C 0.078 3.922 16 N -0.862 5.862 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.199 4.199 22 C -0.213 4.213 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.393 0.607 38 H 0.013 0.987 39 H 0.111 0.889 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -5.182 -7.731 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.173 4.173 4 C 0.015 3.985 5 N -0.376 5.376 6 C -0.010 4.010 7 C -0.233 4.233 8 C 0.407 3.593 9 O -0.487 6.487 10 N -0.351 5.351 11 C 0.060 3.940 12 C 0.037 3.963 13 C -0.534 4.534 14 H 0.077 0.923 15 C -0.127 4.127 16 N -0.497 5.497 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.237 4.237 22 C -0.250 4.250 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.031 0.969 39 H 0.128 0.872 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.382 -5.766 -6.921 12.305 hybrid contribution 1.076 0.319 -0.958 1.476 sum -7.306 -5.446 -7.879 12.047 Atomic orbital electron populations 1.21753 0.96085 1.01179 1.01755 1.21447 0.95689 0.96935 1.01862 1.22006 0.96505 0.96489 1.02344 1.21143 0.92939 0.82207 1.02166 1.47118 1.71488 1.14259 1.04767 1.21337 0.96509 0.97354 0.85817 1.22239 0.97894 1.01468 1.01696 1.15877 0.78787 0.81621 0.83042 1.90807 1.59662 1.67910 1.30326 1.44907 1.63660 1.15805 1.10766 1.20890 0.95218 0.93797 0.84097 1.19251 0.94950 0.85897 0.96243 1.20470 1.08282 1.04037 1.20598 0.92266 1.24955 0.97521 0.94833 0.95368 1.69907 1.34691 1.08400 1.36743 0.86674 0.83816 0.77237 0.80823 1.20626 1.21196 1.19817 1.22932 1.00743 1.07688 0.92362 1.22952 0.95619 1.04485 1.01989 0.92999 0.93052 0.92722 0.92286 0.91843 0.91330 0.92460 0.91678 0.90344 0.91343 0.90800 0.91078 0.92961 0.92141 0.77247 0.96852 0.87154 0.92821 0.91490 0.90272 0.90732 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.31 5.93 -26.73 -0.16 -1.47 16 3 C -0.13 -1.77 5.54 -26.73 -0.15 -1.92 16 4 C 0.14 2.09 5.38 -4.04 -0.02 2.07 16 5 N -0.64 -11.12 2.47 -179.42 -0.44 -11.57 16 6 C 0.11 1.63 5.88 -4.04 -0.02 1.61 16 7 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 8 C 0.71 15.56 8.25 -86.91 -0.72 14.84 16 9 O -0.61 -15.49 15.99 5.29 0.08 -15.41 16 10 N -0.70 -15.56 4.90 -65.22 -0.32 -15.88 16 11 C 0.18 4.47 4.61 -4.04 -0.02 4.45 16 12 C 0.04 0.89 2.04 -155.67 -0.32 0.57 16 13 C -0.50 -12.57 8.40 -34.45 -0.29 -12.86 16 14 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 15 C 0.08 1.98 5.29 -17.82 -0.09 1.89 16 16 N -0.86 -23.02 10.18 55.43 0.56 -22.45 16 17 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.20 -4.38 9.96 -26.69 -0.27 -4.65 16 22 C -0.21 -4.47 9.92 -26.69 -0.26 -4.74 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.08 1.34 7.51 -51.93 -0.39 0.95 16 32 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.07 1.08 6.36 -51.93 -0.33 0.75 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.39 8.28 5.83 -40.82 -0.24 8.04 16 38 H 0.01 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.11 3.07 5.97 -51.93 -0.31 2.76 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -28.65 355.82 -9.34 -37.99 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.99 Total: 10.42 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.57 Total: -3.45 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.20 Total: -49.90 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.65 -9.34 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431060775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.437 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds