Wall clock time and date at job start Mon Mar 30 2020 01:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47185 * 2 1 4 4 C 1.52999 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46874 * 179.97438 * 4 3 2 6 6 C 1.46494 * 119.99925 * 270.00431 * 5 4 3 7 7 C 1.53002 * 109.46914 * 273.18093 * 6 5 4 8 8 C 1.34776 * 119.99654 * 90.00148 * 5 4 3 9 9 O 1.21583 * 120.00278 * 354.15979 * 8 5 4 10 10 N 1.34781 * 119.99526 * 174.43480 * 8 5 4 11 11 C 1.46503 * 119.99793 * 184.55181 * 10 8 5 12 12 C 1.53001 * 109.46924 * 175.02314 * 11 10 8 13 13 C 1.50688 * 115.55004 * 306.47718 * 12 11 10 14 14 H 1.08002 * 119.99872 * 144.20698 * 13 12 11 15 15 C 1.37877 * 120.00386 * 324.20559 * 13 12 11 16 16 N 1.31506 * 120.00044 * 3.29816 * 15 13 12 17 17 Si 1.86804 * 120.00056 * 183.30183 * 15 13 12 18 18 H 1.48496 * 109.47113 * 90.00141 * 17 15 13 19 19 H 1.48501 * 109.46997 * 209.99876 * 17 15 13 20 20 H 1.48502 * 109.47125 * 329.99516 * 17 15 13 21 21 C 1.52997 * 117.49565 * 160.80799 * 12 11 10 22 22 C 1.53001 * 117.49327 * 92.15038 * 12 11 10 23 23 H 1.08998 * 109.47372 * 60.00301 * 1 2 3 24 24 H 1.09006 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47536 * 300.00206 * 1 2 3 26 26 H 1.08997 * 109.47536 * 239.99794 * 2 1 3 27 27 H 1.08997 * 109.46920 * 119.99420 * 2 1 3 28 28 H 1.09002 * 109.46833 * 59.99934 * 3 2 1 29 29 H 1.08998 * 109.46720 * 300.00098 * 3 2 1 30 30 H 1.09002 * 109.47068 * 60.00431 * 4 3 2 31 31 H 1.08998 * 109.47007 * 300.00033 * 4 3 2 32 32 H 1.09000 * 109.47905 * 33.18109 * 6 5 4 33 33 H 1.08998 * 109.47291 * 153.18630 * 6 5 4 34 34 H 1.08995 * 109.47459 * 300.00319 * 7 6 5 35 35 H 1.09001 * 109.47178 * 60.00771 * 7 6 5 36 36 H 1.09005 * 109.47108 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00140 * 4.55403 * 10 8 5 38 38 H 1.08998 * 109.46863 * 295.02720 * 11 10 8 39 39 H 1.08999 * 109.46598 * 55.02341 * 11 10 8 40 40 H 0.97001 * 120.00367 * 185.00880 * 16 15 13 41 41 H 1.09004 * 117.50001 * 359.97438 * 21 12 11 42 42 H 1.09002 * 117.50109 * 145.02035 * 21 12 11 43 43 H 1.09007 * 117.49195 * 214.97449 * 22 12 11 44 44 H 1.08995 * 117.50437 * 359.97228 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3029 3.5136 -1.2690 7 6 5.7229 3.2083 -1.7500 8 6 4.2824 3.4597 1.1670 9 8 3.9800 2.9274 2.2174 10 7 4.8368 4.6883 1.1692 11 6 5.1723 5.3382 2.4386 12 6 5.8957 6.6574 2.1605 13 6 7.1014 6.5606 1.2619 14 1 7.3220 7.3571 0.5666 15 6 7.9231 5.4554 1.3273 16 7 7.6193 4.4565 2.1269 17 14 9.4680 5.3768 0.2801 18 1 10.6071 5.9594 1.0339 19 1 9.7680 3.9613 -0.0541 20 1 9.2571 6.1470 -0.9719 21 6 5.9350 7.6924 3.2866 22 6 5.0428 7.9240 2.0646 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5137 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9286 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 3.5852 3.1698 -2.0138 33 1 4.1911 4.5884 -1.1257 34 1 6.4406 3.5522 -1.0052 35 1 5.8348 2.1336 -1.8933 36 1 5.9051 3.7220 -2.6940 37 1 5.0136 5.1421 0.3304 38 1 4.2581 5.5359 2.9983 39 1 5.8208 4.6840 3.0213 40 1 8.2329 3.7121 2.2280 41 1 5.4453 7.4336 4.2254 42 1 6.8330 8.3036 3.3773 43 1 5.3542 8.6875 1.3517 44 1 3.9664 7.8174 2.1991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431060775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:44 Heat of formation + Delta-G solvation = -33.387943 kcal Electronic energy + Delta-G solvation = -21762.634411 eV Core-core repulsion = 18714.890105 eV Total energy + Delta-G solvation = -3047.744306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05460 -38.65171 -37.24287 -35.78402 -34.49574 -34.04127 -31.68216 -29.62797 -27.71747 -26.95201 -24.58135 -23.91948 -22.93823 -22.00507 -21.09513 -20.36314 -19.06119 -17.97472 -17.22911 -16.76455 -16.27792 -16.20358 -15.63604 -15.29928 -15.01392 -14.74785 -14.55529 -14.30332 -13.95875 -13.70483 -13.46896 -13.30970 -13.22635 -12.95095 -12.76101 -12.53509 -12.30893 -12.21038 -12.09731 -12.02522 -12.00272 -11.86412 -11.50403 -11.41957 -10.97522 -10.80353 -10.64460 -10.13450 -9.82561 -9.20721 -7.91348 -6.16410 1.41265 1.45690 1.52861 1.93913 2.42324 2.47582 3.03444 3.37333 3.68466 4.01732 4.02039 4.09942 4.27594 4.29614 4.37274 4.42479 4.54894 4.56503 4.66903 4.77186 4.80544 4.84651 4.86317 4.92724 4.97341 4.98422 5.00038 5.11462 5.15011 5.29103 5.30736 5.39646 5.40782 5.48446 5.54693 5.62644 5.82059 5.99007 6.03971 6.21793 6.40914 6.85156 7.35788 7.48738 7.90044 8.95470 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.005743 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.867893 B = 4874.656065 C = 5622.200156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.124 4.124 4 C 0.135 3.865 5 N -0.633 5.633 6 C 0.110 3.890 7 C -0.168 4.168 8 C 0.697 3.303 9 O -0.651 6.651 10 N -0.696 5.696 11 C 0.196 3.804 12 C 0.009 3.991 13 C -0.502 4.502 14 H 0.058 0.942 15 C 0.042 3.958 16 N -0.886 5.886 17 Si 0.942 3.058 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.261 1.261 21 C -0.199 4.199 22 C -0.186 4.186 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.398 0.602 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 -5.025 -10.376 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.163 4.163 4 C 0.012 3.988 5 N -0.370 5.370 6 C -0.013 4.013 7 C -0.227 4.227 8 C 0.399 3.601 9 O -0.534 6.534 10 N -0.348 5.348 11 C 0.072 3.928 12 C 0.008 3.992 13 C -0.539 4.539 14 H 0.077 0.923 15 C -0.160 4.160 16 N -0.523 5.523 17 Si 0.768 3.232 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.185 1.185 21 C -0.238 4.238 22 C -0.223 4.223 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.234 0.766 38 H 0.025 0.975 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.094 -5.597 -9.621 14.373 hybrid contribution 1.274 0.272 -0.143 1.310 sum -7.820 -5.325 -9.764 13.596 Atomic orbital electron populations 1.21742 0.95088 1.02136 1.01664 1.21434 0.96531 0.95215 1.02409 1.21896 0.94902 0.98026 1.01452 1.21358 0.94279 0.80812 1.02342 1.47213 1.70351 1.14947 1.04447 1.21604 0.97540 0.97130 0.84993 1.22178 0.96660 1.02307 1.01509 1.16147 0.78570 0.81514 0.83895 1.90765 1.61385 1.68804 1.32487 1.44748 1.63695 1.16106 1.10255 1.20536 0.94039 0.93646 0.84626 1.19278 0.95714 0.86523 0.97678 1.20648 1.08772 1.03858 1.20632 0.92339 1.25515 0.99776 0.94554 0.96196 1.70105 1.35184 1.08733 1.38289 0.85808 0.80707 0.76775 0.79881 1.20960 1.21798 1.18547 1.22956 1.01280 1.06730 0.92846 1.22941 0.96055 1.02360 1.00955 0.91990 0.91600 0.93938 0.90094 0.92947 0.94789 0.90645 0.88197 0.93356 0.87160 0.91163 0.95468 0.91977 0.89484 0.76595 0.97486 0.90961 0.93697 0.90818 0.90304 0.89592 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.89 16 2 C -0.12 -2.34 5.93 30.60 0.18 -2.16 16 3 C -0.12 -3.11 5.54 30.60 0.17 -2.94 16 4 C 0.14 3.92 5.38 86.38 0.46 4.38 16 5 N -0.63 -21.67 2.47 -839.84 -2.08 -23.75 16 6 C 0.11 2.89 5.88 86.38 0.51 3.40 16 7 C -0.17 -4.56 10.24 71.98 0.74 -3.82 16 8 C 0.70 31.54 8.25 179.05 1.48 33.01 16 9 O -0.65 -34.77 15.99 -3.98 -0.06 -34.83 16 10 N -0.70 -31.54 4.90 -478.53 -2.35 -33.89 16 11 C 0.20 9.82 4.61 86.38 0.40 10.22 16 12 C 0.01 0.42 2.04 -52.93 -0.11 0.31 16 13 C -0.50 -25.26 8.40 25.60 0.21 -25.05 16 14 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 15 C 0.04 2.12 5.29 84.66 0.45 2.57 16 16 N -0.89 -48.74 10.18 21.45 0.22 -48.52 16 17 Si 0.94 41.15 29.54 68.60 2.03 43.18 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 21 C -0.20 -8.66 9.96 30.62 0.30 -8.35 16 22 C -0.19 -7.48 9.92 30.62 0.30 -7.18 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 2.21 8.07 -2.39 -0.02 2.19 16 31 H 0.05 1.70 7.51 -2.39 -0.02 1.68 16 32 H 0.11 2.05 8.10 -2.39 -0.02 2.03 16 33 H 0.07 1.92 6.36 -2.39 -0.02 1.90 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.40 16.84 5.83 -92.71 -0.54 16.30 16 38 H 0.01 0.35 8.08 -2.39 -0.02 0.33 16 39 H 0.07 4.21 5.97 -2.39 -0.01 4.20 16 40 H 0.25 13.85 8.32 -92.71 -0.77 13.08 16 41 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 42 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 44 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -63.97 355.82 3.98 -59.99 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.41 Total: 35.31 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 5.81 Total: 2.51 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.20 Total: -106.16 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.06 Total: -34.83 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -63.97 3.98 -59.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431060775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.601 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds