Wall clock time and date at job start Mon Mar 30 2020 00:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 C 1.53004 * 109.47235 * 120.00388 * 2 1 3 5 5 H 1.08995 * 109.46979 * 173.64054 * 4 2 1 6 6 C 1.50694 * 109.46740 * 293.63717 * 4 2 1 7 7 O 1.21281 * 120.00013 * 100.00293 * 6 4 2 8 8 N 1.34773 * 120.00249 * 280.00005 * 6 4 2 9 9 C 1.46498 * 120.00279 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47283 * 183.89464 * 9 8 6 11 11 C 1.50693 * 115.55055 * 305.47301 * 10 9 8 12 12 H 1.08003 * 120.00129 * 95.62450 * 11 10 9 13 13 C 1.37878 * 120.00147 * 275.62464 * 11 10 9 14 14 N 1.31507 * 119.99878 * 7.85085 * 13 11 10 15 15 Si 1.86799 * 120.00077 * 187.84861 * 13 11 10 16 16 H 1.48492 * 109.47144 * 180.02562 * 15 13 11 17 17 H 1.48508 * 109.47151 * 300.00395 * 15 13 11 18 18 H 1.48498 * 109.47055 * 60.00081 * 15 13 11 19 19 C 1.52997 * 117.49631 * 91.14601 * 10 9 8 20 20 C 1.53000 * 117.49496 * 159.80480 * 10 9 8 21 21 N 1.46901 * 109.47206 * 53.63895 * 4 2 1 22 22 C 1.46897 * 110.99977 * 51.63996 * 21 4 2 23 23 C 1.46900 * 110.99887 * 175.59253 * 21 4 2 24 24 H 1.08997 * 109.47286 * 60.00240 * 1 2 3 25 25 H 1.09004 * 109.46909 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47002 * 299.99665 * 1 2 3 27 27 H 1.09008 * 109.46980 * 239.99849 * 2 1 3 28 28 H 1.08998 * 109.46905 * 175.50797 * 3 2 1 29 29 H 1.08994 * 109.46880 * 295.50854 * 3 2 1 30 30 H 1.08998 * 109.46686 * 55.50725 * 3 2 1 31 31 H 0.96995 * 120.00295 * 0.02562 * 8 6 4 32 32 H 1.09006 * 109.47129 * 63.89753 * 9 8 6 33 33 H 1.08998 * 109.47134 * 303.89934 * 9 8 6 34 34 H 0.97000 * 120.00374 * 355.91357 * 14 13 11 35 35 H 1.08998 * 117.49651 * 215.00220 * 19 10 9 36 36 H 1.08997 * 117.50073 * 0.02562 * 19 10 9 37 37 H 1.09000 * 117.50230 * 359.97438 * 20 10 9 38 38 H 1.09003 * 117.49724 * 144.98273 * 20 10 9 39 39 H 1.09001 * 109.47205 * 52.43890 * 22 21 4 40 40 H 1.09003 * 109.46919 * 172.44426 * 22 21 4 41 41 H 1.08997 * 109.47175 * 292.43830 * 22 21 4 42 42 H 1.09000 * 109.46638 * 56.04849 * 23 21 4 43 43 H 1.09000 * 109.46974 * 176.04532 * 23 21 4 44 44 H 1.08996 * 109.46980 * 296.04701 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1240 -0.8209 1.1941 6 6 1.6704 0.0741 2.4746 7 8 0.7086 -0.2482 3.1394 8 7 2.4086 1.1436 2.8318 9 6 2.0495 1.9165 4.0233 10 6 2.9813 3.1237 4.1481 11 6 4.4552 2.8100 4.1476 12 1 5.0196 2.8693 3.2287 13 6 5.0832 2.4471 5.3201 14 7 4.3734 2.2245 6.4046 15 14 6.9423 2.2718 5.3684 16 1 7.3668 1.8752 6.7350 17 1 7.3668 1.2315 4.3972 18 1 7.5713 3.5687 5.0110 19 6 2.5368 4.4303 3.4876 20 6 2.5085 4.2946 5.0121 21 7 1.4291 -2.0550 1.3283 22 6 1.6006 -2.7882 0.0671 23 6 1.9747 -2.8177 2.4590 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1271 1.4435 0.0805 29 1 1.7439 1.9325 -0.9274 30 1 1.6125 1.9790 0.8470 31 1 3.1776 1.4016 2.3000 32 1 2.1493 1.2877 4.9081 33 1 1.0189 2.2604 3.9364 34 1 3.4148 2.3728 6.3958 35 1 3.3106 5.0629 3.0526 36 1 1.5805 4.4300 2.9646 37 1 1.5336 4.2051 5.4912 38 1 3.2636 4.8379 5.5803 39 1 2.6537 -2.7865 -0.2139 40 1 1.2602 -3.8158 0.1951 41 1 1.0149 -2.3064 -0.7158 42 1 1.8346 -2.2520 3.3802 43 1 1.4559 -3.7731 2.5369 44 1 3.0384 -2.9938 2.2990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435961834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:08 Heat of formation + Delta-G solvation = -35.125167 kcal Electronic energy + Delta-G solvation = -22158.352893 eV Core-core repulsion = 19110.533255 eV Total energy + Delta-G solvation = -3047.819638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40860 -39.10640 -37.99608 -35.67804 -34.62651 -33.96094 -29.64625 -28.52080 -27.81287 -27.45109 -26.75998 -23.49496 -23.10552 -22.18967 -21.58665 -20.27452 -18.66396 -17.90177 -17.39108 -16.87825 -16.24961 -15.94124 -15.61734 -15.58886 -15.16840 -14.89412 -14.60528 -14.44357 -14.19004 -13.78126 -13.56502 -13.48926 -13.23566 -13.03713 -12.84864 -12.75576 -12.62832 -12.49455 -12.23849 -11.97253 -11.90744 -11.84212 -11.67261 -11.50932 -10.73025 -10.56573 -10.44854 -10.26292 -9.84344 -9.29585 -8.53350 -6.29331 1.55059 1.61331 1.72372 1.79546 2.21497 2.58444 2.96516 3.23206 3.26870 3.68523 3.84973 3.99998 4.05624 4.21155 4.25590 4.34191 4.37252 4.43591 4.44154 4.54743 4.56623 4.69487 4.73894 4.80285 4.82354 4.83263 4.96190 4.98121 5.00763 5.04558 5.08447 5.14367 5.30505 5.39888 5.43552 5.50236 5.60234 5.88804 6.08581 6.13329 6.25358 6.67818 6.77982 7.38788 7.54539 8.85765 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.006058 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.787402 B = 4621.040416 C = 5159.238157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.159 4.159 4 C 0.075 3.925 5 H 0.066 0.934 6 C 0.512 3.488 7 O -0.576 6.576 8 N -0.698 5.698 9 C 0.177 3.823 10 C -0.017 4.017 11 C -0.575 4.575 12 H 0.056 0.944 13 C -0.018 4.018 14 N -0.931 5.931 15 Si 1.107 2.893 16 H -0.293 1.293 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.162 4.162 20 C -0.180 4.180 21 N -0.537 5.537 22 C 0.021 3.979 23 C 0.026 3.974 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.022 0.978 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.408 0.592 32 H 0.018 0.982 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -5.535 -15.887 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.217 4.217 4 C -0.037 4.037 5 H 0.084 0.916 6 C 0.298 3.702 7 O -0.456 6.456 8 N -0.349 5.349 9 C 0.052 3.948 10 C -0.017 4.017 11 C -0.613 4.613 12 H 0.074 0.926 13 C -0.219 4.219 14 N -0.567 5.567 15 Si 0.930 3.070 16 H -0.220 1.220 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.200 4.200 20 C -0.219 4.219 21 N -0.261 5.261 22 C -0.126 4.126 23 C -0.123 4.123 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.244 0.756 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.105 0.895 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.484 -6.128 -14.347 15.797 hybrid contribution -0.242 0.595 -0.355 0.734 sum -2.727 -5.533 -14.702 15.944 Atomic orbital electron populations 1.21710 0.94275 1.02518 1.00600 1.21163 0.97023 0.96171 0.95223 1.22058 1.01499 0.95286 1.02872 1.21761 0.97764 0.90521 0.93607 0.91606 1.20969 0.82389 0.80476 0.86335 1.90618 1.29815 1.69455 1.55713 1.45979 1.31585 1.29163 1.28134 1.20540 0.95497 0.92421 0.86322 1.19325 0.94553 0.86059 1.01811 1.21433 0.91892 1.51271 0.96687 0.92603 1.26997 1.09788 0.92707 0.92398 1.70841 1.09218 1.44822 1.31771 0.83052 0.70411 0.77606 0.75919 1.21955 1.19619 1.19612 1.22911 1.01485 1.01680 0.93877 1.22687 1.00394 1.05117 0.93672 1.61672 1.57971 1.01275 1.05220 1.22585 1.00603 0.98988 0.90388 1.22376 0.97618 0.98693 0.93571 0.91138 0.91443 0.95880 0.87295 0.91792 0.89967 0.93915 0.75552 0.96349 0.94319 0.92608 0.89389 0.89180 0.90446 0.91482 0.94494 0.90119 0.89562 0.94353 0.89539 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.55 71.98 0.62 -2.63 16 2 C -0.08 -1.73 2.20 -10.79 -0.02 -1.75 16 3 C -0.16 -3.61 7.88 71.98 0.57 -3.04 16 4 C 0.08 2.16 1.77 44.17 0.08 2.24 16 5 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 6 C 0.51 19.66 4.65 87.66 0.41 20.07 16 7 O -0.58 -26.66 15.13 -3.03 -0.05 -26.71 16 8 N -0.70 -27.79 4.05 -463.07 -1.87 -29.67 16 9 C 0.18 8.17 5.50 86.38 0.48 8.64 16 10 C -0.02 -0.77 1.08 -52.93 -0.06 -0.83 16 11 C -0.58 -29.28 8.08 25.60 0.21 -29.07 16 12 H 0.06 2.75 7.83 -2.91 -0.02 2.73 16 13 C -0.02 -0.98 5.38 84.66 0.46 -0.53 16 14 N -0.93 -54.79 13.57 21.45 0.29 -54.50 16 15 Si 1.11 47.85 29.91 68.60 2.05 49.90 16 16 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 C -0.16 -6.44 9.93 30.62 0.30 -6.13 16 20 C -0.18 -8.07 8.85 30.62 0.27 -7.80 16 21 N -0.54 -14.64 3.73 -927.75 -3.46 -18.10 16 22 C 0.02 0.39 8.49 127.69 1.08 1.47 16 23 C 0.03 0.73 9.25 127.69 1.18 1.92 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.63 6.29 -2.38 -0.01 1.62 16 26 H 0.02 0.71 7.22 -2.39 -0.02 0.69 16 27 H 0.11 1.81 6.89 -2.38 -0.02 1.79 16 28 H 0.06 1.37 7.81 -2.39 -0.02 1.35 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.20 6.38 -2.39 -0.02 1.19 16 31 H 0.41 15.17 6.76 -92.71 -0.63 14.54 16 32 H 0.02 0.98 7.62 -2.38 -0.02 0.97 16 33 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 34 H 0.26 15.74 6.08 -92.71 -0.56 15.18 16 35 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.07 3.22 8.14 -2.39 -0.02 3.21 16 39 H 0.04 0.60 8.11 -2.39 -0.02 0.58 16 40 H 0.08 1.28 8.04 -2.39 -0.02 1.26 16 41 H 0.09 1.35 5.74 -2.39 -0.01 1.34 16 42 H 0.04 1.39 6.39 -2.39 -0.02 1.38 16 43 H 0.09 2.09 8.11 -2.39 -0.02 2.07 16 44 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -65.55 341.78 3.08 -62.47 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.55 Total: 34.04 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.57 Total: -17.44 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -5.04 Total: -102.27 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.05 Total: 49.90 kcal Total: -65.55 3.08 -62.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435961834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.348 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds