Wall clock time and date at job start Mon Mar 30 2020 00:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47064 * 2 1 4 4 C 1.53002 * 109.46970 * 119.99571 * 2 1 3 5 5 H 1.08995 * 115.55414 * 274.32801 * 4 2 1 6 6 C 1.53000 * 117.49634 * 128.62197 * 4 2 1 7 7 C 1.52995 * 60.00003 * 252.51431 * 6 4 2 8 8 H 1.08998 * 117.52129 * 107.49084 * 7 6 4 9 9 C 1.53003 * 117.49637 * 252.51063 * 7 6 4 10 10 N 1.46497 * 109.47096 * 243.62322 * 9 7 6 11 11 C 1.34784 * 119.99763 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00160 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99541 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99746 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47368 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47194 * 300.00323 * 1 2 3 27 27 H 1.09000 * 109.47403 * 59.99832 * 1 2 3 28 28 H 1.08999 * 109.47465 * 240.00071 * 2 1 3 29 29 H 1.09005 * 109.46961 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47239 * 299.99853 * 3 2 1 31 31 H 1.08999 * 109.46922 * 59.99738 * 3 2 1 32 32 H 1.08999 * 117.49943 * 145.01949 * 6 4 2 33 33 H 1.09007 * 117.50116 * 0.02562 * 6 4 2 34 34 H 1.08996 * 109.47407 * 123.62069 * 9 7 6 35 35 H 1.09000 * 109.46848 * 3.62404 * 9 7 6 36 36 H 0.97003 * 120.00500 * 0.02562 * 10 9 7 37 37 H 0.97003 * 120.00723 * 359.97438 * 13 11 10 38 38 H 1.09000 * 109.47175 * 59.99850 * 14 13 11 39 39 H 1.09004 * 109.47042 * 299.99808 * 14 13 11 40 40 H 1.09004 * 109.47368 * 59.99943 * 15 14 13 41 41 H 1.09004 * 109.47108 * 300.00044 * 15 14 13 42 42 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 43 43 H 1.08992 * 109.46974 * 300.00318 * 16 15 14 44 44 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1267 -0.1060 2.1449 6 6 3.0741 -1.8313 1.0515 7 6 1.6357 -2.1851 1.4343 8 1 1.0061 -2.6344 0.6663 9 6 1.3846 -2.6736 2.8624 10 7 0.8961 -4.0543 2.8274 11 6 0.6054 -4.6956 3.9767 12 8 0.7489 -4.1283 5.0425 13 7 0.1565 -5.9660 3.9445 14 6 -0.1590 -6.6632 5.1937 15 6 -0.6448 -8.0794 4.8788 16 6 -0.9737 -8.8078 6.1835 17 6 -1.4528 -10.2025 5.8731 18 1 -1.5159 -10.5362 4.8479 19 6 -1.8105 -11.0525 6.8981 20 7 -1.7341 -10.6460 8.1465 21 14 -2.4037 -12.7816 6.5134 22 1 -2.7242 -13.4881 7.7797 23 1 -3.6206 -12.7103 5.6653 24 1 -1.3384 -13.5208 5.7896 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.8415 -1.9464 1.8169 33 1 3.3914 -2.0476 0.0313 34 1 0.6393 -2.0365 3.3386 35 1 2.3144 -2.6313 3.4296 36 1 0.7820 -4.5071 1.9772 37 1 0.0424 -6.4188 3.0943 38 1 -0.9412 -6.1209 5.7249 39 1 0.7342 -6.7152 5.8164 40 1 0.1371 -8.6220 4.3474 41 1 -1.5381 -8.0271 4.2563 42 1 -1.7555 -8.2654 6.7152 43 1 -0.0803 -8.8601 6.8056 44 1 -1.4257 -9.7483 8.3462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454447280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:42 Heat of formation + Delta-G solvation = -47.548966 kcal Electronic energy + Delta-G solvation = -19509.832011 eV Core-core repulsion = 16461.473637 eV Total energy + Delta-G solvation = -3048.358374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95027 -38.86619 -35.72204 -34.84027 -33.61027 -33.24953 -31.01442 -27.67565 -27.38267 -25.70119 -23.30977 -22.89008 -21.31014 -20.94204 -20.73264 -20.03703 -18.04914 -16.86876 -16.37512 -15.71769 -15.40261 -15.24504 -14.50757 -14.30707 -14.06780 -13.76470 -13.71353 -13.54373 -13.45986 -12.89807 -12.74739 -12.56070 -11.82082 -11.76202 -11.69225 -11.59377 -11.51130 -11.06058 -10.85208 -10.78417 -10.42142 -10.36116 -10.18470 -10.07366 -9.98623 -9.75704 -9.18858 -8.62524 -8.56318 -8.32414 -6.35584 -4.05219 2.75136 3.32083 3.40151 3.43914 3.46004 3.64909 4.09006 4.34340 4.38816 4.51428 4.55672 4.66017 4.81825 4.89198 4.96863 5.18244 5.26787 5.34545 5.41546 5.46097 5.48973 5.49505 5.55515 5.63192 5.66652 5.73286 5.76212 5.82890 5.89978 6.00966 6.08906 6.44345 6.44927 6.51830 6.73931 6.89688 7.04008 7.38103 7.50670 8.12856 8.19945 8.45981 8.73221 8.88457 9.67294 11.05151 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.052834 B = 0.002209 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.831045 B =12670.344117 C =12833.571415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.135 4.135 5 H 0.107 0.893 6 C -0.172 4.172 7 C -0.163 4.163 8 H 0.110 0.890 9 C 0.171 3.829 10 N -0.749 5.749 11 C 0.700 3.300 12 O -0.595 6.595 13 N -0.742 5.742 14 C 0.135 3.865 15 C -0.113 4.113 16 C 0.010 3.990 17 C -0.604 4.604 18 H 0.049 0.951 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.395 0.605 37 H 0.394 0.606 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 21.102 -19.355 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.154 4.154 5 H 0.125 0.875 6 C -0.208 4.208 7 C -0.182 4.182 8 H 0.128 0.872 9 C 0.047 3.953 10 N -0.406 5.406 11 C 0.399 3.601 12 O -0.473 6.473 13 N -0.396 5.396 14 C 0.011 3.989 15 C -0.151 4.151 16 C -0.027 4.027 17 C -0.642 4.642 18 H 0.067 0.933 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.898 3.102 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.215 1.215 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.228 0.772 37 H 0.227 0.773 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.204 20.223 -17.622 27.775 hybrid contribution 0.464 0.980 -1.574 1.911 sum 7.668 21.203 -19.196 29.612 Atomic orbital electron populations 1.21829 0.94814 1.01995 1.01772 1.20718 0.95808 0.96013 0.95945 1.21810 1.01088 0.95504 1.01834 1.22484 1.02825 0.90090 0.99973 0.87470 1.23249 0.92086 1.02706 1.02800 1.22534 0.99028 0.98913 0.97699 0.87233 1.20657 0.99475 0.81271 0.93902 1.45086 1.72718 1.15153 1.07602 1.16007 0.78371 0.81605 0.84075 1.90916 1.60234 1.67215 1.28916 1.45344 1.70872 1.12626 1.10792 1.21495 1.00223 0.92981 0.84167 1.21751 0.99978 0.92040 1.01364 1.19159 0.96153 0.95611 0.91807 1.22018 1.48609 0.98560 0.94994 0.93312 1.25873 0.95080 1.04912 0.93182 1.70775 1.43881 1.20941 1.19177 0.83532 0.76275 0.74818 0.75568 1.20749 1.21476 1.21473 0.92541 0.92462 0.92772 0.91231 0.92573 0.92657 0.92532 0.88517 0.88681 0.91406 0.91632 0.77172 0.77284 0.92043 0.92043 0.92597 0.92592 0.97136 0.97134 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.03 37.16 0.34 -0.54 16 2 C -0.07 -0.38 3.07 -90.62 -0.28 -0.66 16 3 C -0.15 -0.76 9.18 37.16 0.34 -0.42 16 4 C -0.14 -0.88 4.87 -90.62 -0.44 -1.32 16 5 H 0.11 0.73 8.11 -51.93 -0.42 0.31 16 6 C -0.17 -1.12 9.82 -26.73 -0.26 -1.38 16 7 C -0.16 -1.17 5.05 -90.62 -0.46 -1.63 16 8 H 0.11 0.71 7.50 -51.93 -0.39 0.32 16 9 C 0.17 1.73 5.96 -4.04 -0.02 1.71 16 10 N -0.75 -8.36 5.56 -65.23 -0.36 -8.72 16 11 C 0.70 11.04 8.57 -86.91 -0.74 10.30 16 12 O -0.59 -12.04 16.34 5.29 0.09 -11.95 16 13 N -0.74 -11.08 5.56 -65.22 -0.36 -11.44 16 14 C 0.13 2.46 5.67 -4.04 -0.02 2.44 16 15 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 16 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 17 C -0.60 -17.24 9.11 -34.44 -0.31 -17.56 16 18 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 19 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 20 N -0.91 -28.29 13.65 55.43 0.76 -27.53 16 21 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.35 7.29 -51.93 -0.38 -0.03 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.39 7.90 -51.93 -0.41 -0.02 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 33 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 36 H 0.39 3.23 8.42 -40.82 -0.34 2.89 16 37 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 43 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 44 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -33.82 361.74 -9.83 -43.65 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.09 Total: 1.30 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.23 Total: -11.04 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.03 Total: -47.70 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.82 -9.83 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454447280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.898 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds