Wall clock time and date at job start Mon Mar 30 2020 00:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47064 * 2 1 4 4 C 1.53002 * 109.46970 * 119.99571 * 2 1 3 5 5 H 1.08995 * 115.55414 * 274.32801 * 4 2 1 6 6 C 1.53000 * 117.49634 * 128.62197 * 4 2 1 7 7 C 1.52995 * 60.00003 * 252.51431 * 6 4 2 8 8 H 1.08998 * 117.52129 * 107.49084 * 7 6 4 9 9 C 1.53003 * 117.49637 * 252.51063 * 7 6 4 10 10 N 1.46497 * 109.47096 * 243.62322 * 9 7 6 11 11 C 1.34784 * 119.99763 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00160 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99541 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99746 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47368 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47194 * 300.00323 * 1 2 3 27 27 H 1.09000 * 109.47403 * 59.99832 * 1 2 3 28 28 H 1.08999 * 109.47465 * 240.00071 * 2 1 3 29 29 H 1.09005 * 109.46961 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47239 * 299.99853 * 3 2 1 31 31 H 1.08999 * 109.46922 * 59.99738 * 3 2 1 32 32 H 1.08999 * 117.49943 * 145.01949 * 6 4 2 33 33 H 1.09007 * 117.50116 * 0.02562 * 6 4 2 34 34 H 1.08996 * 109.47407 * 123.62069 * 9 7 6 35 35 H 1.09000 * 109.46848 * 3.62404 * 9 7 6 36 36 H 0.97003 * 120.00500 * 0.02562 * 10 9 7 37 37 H 0.97003 * 120.00723 * 359.97438 * 13 11 10 38 38 H 1.09000 * 109.47175 * 59.99850 * 14 13 11 39 39 H 1.09004 * 109.47042 * 299.99808 * 14 13 11 40 40 H 1.09004 * 109.47368 * 59.99943 * 15 14 13 41 41 H 1.09004 * 109.47108 * 300.00044 * 15 14 13 42 42 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 43 43 H 1.08992 * 109.46974 * 300.00318 * 16 15 14 44 44 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1267 -0.1060 2.1449 6 6 3.0741 -1.8313 1.0515 7 6 1.6357 -2.1851 1.4343 8 1 1.0061 -2.6344 0.6663 9 6 1.3846 -2.6736 2.8624 10 7 0.8961 -4.0543 2.8274 11 6 0.6054 -4.6956 3.9767 12 8 0.7489 -4.1283 5.0425 13 7 0.1565 -5.9660 3.9445 14 6 -0.1590 -6.6632 5.1937 15 6 -0.6448 -8.0794 4.8788 16 6 -0.9737 -8.8078 6.1835 17 6 -1.4528 -10.2025 5.8731 18 1 -1.5159 -10.5362 4.8479 19 6 -1.8105 -11.0525 6.8981 20 7 -1.7341 -10.6460 8.1465 21 14 -2.4037 -12.7816 6.5134 22 1 -2.7242 -13.4881 7.7797 23 1 -3.6206 -12.7103 5.6653 24 1 -1.3384 -13.5208 5.7896 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.8415 -1.9464 1.8169 33 1 3.3914 -2.0476 0.0313 34 1 0.6393 -2.0365 3.3386 35 1 2.3144 -2.6313 3.4296 36 1 0.7820 -4.5071 1.9772 37 1 0.0424 -6.4188 3.0943 38 1 -0.9412 -6.1209 5.7249 39 1 0.7342 -6.7152 5.8164 40 1 0.1371 -8.6220 4.3474 41 1 -1.5381 -8.0271 4.2563 42 1 -1.7555 -8.2654 6.7152 43 1 -0.0803 -8.8601 6.8056 44 1 -1.4257 -9.7483 8.3462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454447280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:42 Heat of formation + Delta-G solvation = -69.225939 kcal Electronic energy + Delta-G solvation = -19510.771995 eV Core-core repulsion = 16461.473637 eV Total energy + Delta-G solvation = -3049.298358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13611 -39.53086 -37.25171 -35.86010 -35.44666 -34.06866 -32.76162 -28.84063 -27.99501 -27.19657 -24.82552 -23.79149 -22.54585 -22.09786 -21.92513 -20.66154 -19.22317 -18.92619 -17.50610 -17.00756 -16.22597 -15.96047 -15.86734 -15.62555 -15.44967 -15.09570 -14.92041 -14.57311 -14.48985 -13.94059 -13.66414 -13.59169 -13.29582 -12.99137 -12.58708 -12.57592 -12.38268 -12.14875 -12.06217 -11.98989 -11.86968 -11.79046 -11.53329 -11.48638 -10.96957 -10.80096 -10.68366 -10.53744 -10.40919 -9.79846 -8.68145 -6.39234 1.54260 1.62857 1.63303 1.82228 2.07592 2.58913 2.78195 3.16990 3.26907 3.57747 3.83961 3.96751 4.04835 4.11276 4.14692 4.20902 4.37266 4.42297 4.45523 4.66939 4.69697 4.74634 4.79922 4.84651 4.85794 4.95475 4.96659 5.01914 5.06592 5.18676 5.23808 5.30663 5.33809 5.43870 5.44826 5.48037 5.48484 5.54855 5.94571 5.99917 6.19256 6.56796 7.06059 7.43815 7.51779 8.72618 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.052834 B = 0.002209 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.831045 B =12670.344117 C =12833.571415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.133 4.133 5 H 0.101 0.899 6 C -0.166 4.166 7 C -0.161 4.161 8 H 0.124 0.876 9 C 0.172 3.828 10 N -0.727 5.727 11 C 0.696 3.304 12 O -0.643 6.643 13 N -0.730 5.730 14 C 0.150 3.850 15 C -0.094 4.094 16 C 0.006 3.994 17 C -0.617 4.617 18 H 0.058 0.942 19 C -0.044 4.044 20 N -0.940 5.940 21 Si 1.121 2.879 22 H -0.287 1.287 23 H -0.267 1.267 24 H -0.267 1.267 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.413 0.587 37 H 0.413 0.587 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.068 0.932 42 H -0.011 1.011 43 H -0.011 1.011 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 20.776 -22.294 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.202 4.202 4 C -0.152 4.152 5 H 0.119 0.881 6 C -0.203 4.203 7 C -0.180 4.180 8 H 0.141 0.859 9 C 0.048 3.952 10 N -0.384 5.384 11 C 0.396 3.604 12 O -0.525 6.525 13 N -0.386 5.386 14 C 0.025 3.975 15 C -0.132 4.132 16 C -0.031 4.031 17 C -0.655 4.655 18 H 0.077 0.923 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.941 3.059 22 H -0.212 1.212 23 H -0.192 1.192 24 H -0.192 1.192 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.250 0.750 37 H 0.249 0.751 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.312 19.919 -20.654 29.610 hybrid contribution 0.463 1.164 -0.668 1.420 sum 7.775 21.083 -21.322 30.977 Atomic orbital electron populations 1.21831 0.94966 1.01878 1.01754 1.20716 0.95625 0.96228 0.95638 1.21806 1.01193 0.95226 1.01980 1.22524 1.02686 0.89765 1.00221 0.88084 1.23299 0.91480 1.02109 1.03387 1.22409 1.00056 0.99570 0.95939 0.85855 1.20690 0.98373 0.80336 0.95842 1.44917 1.71128 1.15332 1.07036 1.16188 0.78186 0.81577 0.84492 1.90888 1.62225 1.68286 1.31100 1.44985 1.70638 1.12467 1.10477 1.21059 0.99011 0.92156 0.85297 1.21470 1.00940 0.92344 0.98440 1.19129 0.94463 0.95356 0.94179 1.22484 1.47883 0.99681 0.95479 0.92336 1.27543 0.94723 1.09198 0.92666 1.70917 1.45896 1.20350 1.20544 0.82897 0.77181 0.70039 0.75745 1.21225 1.19182 1.19176 0.92689 0.93212 0.92100 0.90545 0.92412 0.92024 0.92913 0.88961 0.87324 0.92726 0.92850 0.74998 0.75083 0.93529 0.93531 0.91324 0.91313 0.99235 0.99224 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.03 71.98 0.65 -0.86 16 2 C -0.06 -0.62 3.07 -10.79 -0.03 -0.65 16 3 C -0.14 -1.30 9.18 71.98 0.66 -0.64 16 4 C -0.13 -1.54 4.87 -10.79 -0.05 -1.59 16 5 H 0.10 1.30 8.11 -2.39 -0.02 1.28 16 6 C -0.17 -1.83 9.82 30.59 0.30 -1.53 16 7 C -0.16 -2.02 5.05 -10.79 -0.05 -2.07 16 8 H 0.12 1.25 7.50 -2.39 -0.02 1.23 16 9 C 0.17 3.34 5.96 86.38 0.51 3.85 16 10 N -0.73 -15.12 5.56 -478.53 -2.66 -17.78 16 11 C 0.70 21.44 8.57 179.05 1.53 22.97 16 12 O -0.64 -26.38 16.34 -3.97 -0.06 -26.45 16 13 N -0.73 -20.79 5.56 -478.53 -2.66 -23.45 16 14 C 0.15 5.44 5.67 86.38 0.49 5.93 16 15 C -0.09 -3.68 5.27 30.59 0.16 -3.52 16 16 C 0.01 0.34 4.28 29.85 0.13 0.46 16 17 C -0.62 -35.06 9.11 25.60 0.23 -34.83 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 19 C -0.04 -2.59 5.46 84.66 0.46 -2.13 16 20 N -0.94 -59.40 13.65 21.45 0.29 -59.10 16 21 Si 1.12 50.00 29.90 68.60 2.05 52.05 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H 0.05 0.58 7.29 -2.39 -0.02 0.56 16 26 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.66 7.90 -2.39 -0.02 0.64 16 29 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 1.12 8.03 -2.39 -0.02 1.11 16 33 H 0.11 0.94 8.05 -2.38 -0.02 0.92 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.19 7.87 -2.39 -0.02 1.17 16 36 H 0.41 5.64 8.42 -92.71 -0.78 4.86 16 37 H 0.41 8.68 8.49 -92.71 -0.79 7.89 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 42 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 16 43 H -0.01 -0.59 8.01 -2.39 -0.02 -0.61 16 44 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 Total: -1.00 -73.78 361.74 1.45 -72.33 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.50 Total: 16.99 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.99 Total: -14.60 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -5.03 Total: -100.33 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.06 Total: -26.45 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Total: -73.78 1.45 -72.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454447280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.106 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds