Wall clock time and date at job start Mon Mar 30 2020 01:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 C 1.53000 * 109.47231 * 240.00280 * 2 1 3 5 5 N 1.46499 * 109.47307 * 59.99397 * 4 2 1 6 6 C 1.34772 * 120.00163 * 179.97438 * 5 4 2 7 7 O 1.21591 * 119.99780 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00256 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00300 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47415 * 179.97438 * 9 8 6 11 11 C 1.50694 * 109.47264 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00023 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99864 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99942 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47045 * 90.00177 * 15 13 11 17 17 H 1.48500 * 109.47418 * 210.00040 * 15 13 11 18 18 H 1.48504 * 109.47239 * 330.00321 * 15 13 11 19 19 C 1.52998 * 109.47023 * 119.99962 * 2 1 3 20 20 C 1.53782 * 113.61238 * 183.79176 * 19 2 1 21 21 C 1.53782 * 87.07854 * 139.98266 * 20 19 2 22 22 C 1.53776 * 87.08286 * 334.56898 * 21 20 19 23 23 H 1.09001 * 109.47225 * 294.67148 * 1 2 3 24 24 H 1.09000 * 109.47239 * 54.67366 * 1 2 3 25 25 H 1.09000 * 109.47322 * 174.67160 * 1 2 3 26 26 H 1.09003 * 109.46980 * 173.66619 * 3 2 1 27 27 H 1.08998 * 109.47417 * 293.66441 * 3 2 1 28 28 H 1.08997 * 109.47447 * 53.66757 * 3 2 1 29 29 H 1.08996 * 109.47212 * 180.02562 * 4 2 1 30 30 H 1.09008 * 109.46655 * 300.00198 * 4 2 1 31 31 H 0.97000 * 120.00077 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99877 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.47283 * 300.00392 * 9 8 6 34 34 H 1.09006 * 109.46914 * 60.00355 * 9 8 6 35 35 H 1.08998 * 109.47564 * 300.00648 * 10 9 8 36 36 H 1.09006 * 109.46440 * 60.00493 * 10 9 8 37 37 H 0.97003 * 119.99611 * 180.02562 * 14 13 11 38 38 H 1.08998 * 112.90780 * 52.54618 * 19 2 1 39 39 H 1.09000 * 113.61445 * 25.43597 * 20 19 2 40 40 H 1.08998 * 113.69556 * 254.53888 * 20 19 2 41 41 H 1.08999 * 113.61482 * 89.11897 * 21 20 19 42 42 H 1.09000 * 113.61535 * 220.02169 * 21 20 19 43 43 H 1.08996 * 113.61705 * 139.97927 * 22 21 20 44 44 H 1.09007 * 113.61658 * 270.88413 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5516 -0.0306 -2.4454 6 6 1.8776 -0.4907 -3.6695 7 8 2.5768 -1.4793 -3.7811 8 7 1.4287 0.1448 -4.7700 9 6 1.7826 -0.3556 -6.1005 10 6 1.1493 0.5398 -7.1674 11 6 1.5129 0.0246 -8.5360 12 1 2.1332 -0.8538 -8.6351 13 6 1.0535 0.6748 -9.6618 14 7 0.2985 1.7449 -9.5411 15 14 1.5048 0.0366 -11.3584 16 1 0.4810 -0.9405 -11.8081 17 1 1.5605 1.1708 -12.3153 18 1 2.8316 -0.6280 -11.3006 19 6 2.0400 -0.7212 1.2492 20 6 3.5709 -0.6966 1.3929 21 6 3.3473 -0.4687 2.8972 22 6 1.9852 0.1390 2.5227 23 1 -0.3634 0.4290 0.9339 24 1 -0.3634 0.5942 -0.8384 25 1 -0.3634 -1.0232 -0.0954 26 1 3.1240 1.4447 0.1134 27 1 1.7721 1.9226 -0.9412 28 1 1.5870 1.9881 0.8278 29 1 3.1300 -0.7216 -1.2490 30 1 1.6766 -1.7489 -1.2493 31 1 0.9942 0.7582 -2.3564 32 1 0.8707 0.9332 -4.6810 33 1 2.8665 -0.3474 -6.2154 34 1 1.4128 -1.3745 -6.2157 35 1 0.0655 0.5312 -7.0524 36 1 1.5188 1.5589 -7.0523 37 1 -0.0249 2.2020 -10.3331 38 1 1.6057 -1.7132 1.3734 39 1 4.0432 0.1467 0.8890 40 1 4.0479 -1.6490 1.1618 41 1 3.2704 -1.3917 3.4720 42 1 4.0393 0.2490 3.3377 43 1 1.1808 -0.1395 3.2035 44 1 2.0240 1.2107 2.3277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454786678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:00 Heat of formation + Delta-G solvation = -36.019592 kcal Electronic energy + Delta-G solvation = -20524.869007 eV Core-core repulsion = 17477.010584 eV Total energy + Delta-G solvation = -3047.858423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43857 -39.21492 -36.01374 -34.67280 -32.96142 -32.47703 -29.49375 -27.62029 -27.07369 -25.56896 -25.36121 -24.15046 -21.08926 -20.55519 -20.32415 -18.63114 -17.96048 -16.37708 -15.90843 -15.84300 -15.42984 -15.19014 -14.50686 -14.42984 -14.26895 -13.62334 -13.46296 -13.26618 -13.01160 -12.91544 -12.45109 -12.25807 -12.07393 -11.80830 -11.71171 -11.27092 -11.15837 -11.09895 -11.00609 -10.61140 -10.58061 -10.30367 -10.27848 -10.23853 -9.87026 -9.51593 -9.23073 -8.91047 -8.45240 -8.18100 -6.07096 -4.09453 3.14203 3.31304 3.37337 3.42259 3.67980 4.23227 4.33278 4.38032 4.43257 4.56049 4.71875 4.80197 4.85072 4.92018 5.14106 5.30047 5.38265 5.40115 5.44340 5.50701 5.58992 5.62629 5.64970 5.74636 5.76992 5.81235 5.91651 5.97412 6.07630 6.09492 6.31980 6.35145 6.44277 6.71142 6.82309 7.06483 7.31308 7.60602 7.66689 7.92577 8.29385 8.50712 8.95954 9.07873 9.55133 11.04645 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051351 B = 0.002789 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.138915 B =10037.129102 C =10280.615046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.147 4.147 4 C 0.153 3.847 5 N -0.751 5.751 6 C 0.697 3.303 7 O -0.600 6.600 8 N -0.740 5.740 9 C 0.140 3.860 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.096 4.096 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.139 4.139 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.392 0.608 32 H 0.392 0.608 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -0.197 25.090 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.204 4.204 4 C 0.028 3.972 5 N -0.409 5.409 6 C 0.397 3.603 7 O -0.479 6.479 8 N -0.394 5.394 9 C 0.018 3.982 10 C -0.024 4.024 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.115 4.115 20 C -0.179 4.179 21 C -0.181 4.181 22 C -0.176 4.176 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.225 0.775 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.757 -0.999 24.843 24.925 hybrid contribution -0.395 0.464 -0.910 1.095 sum 1.362 -0.535 23.933 23.977 Atomic orbital electron populations 1.21840 0.94041 1.02194 1.01706 1.20706 0.96038 0.95814 0.94105 1.22040 1.01543 0.95047 1.01811 1.21089 0.98835 0.95400 0.81885 1.45186 1.57581 1.33562 1.04551 1.16084 0.80609 0.83157 0.80470 1.90883 1.43118 1.27805 1.86070 1.45525 1.55519 1.32376 1.05932 1.21568 0.99531 0.98481 0.78655 1.19321 0.96264 0.94780 0.92082 1.21062 1.31892 1.12518 0.90383 0.92222 1.25000 0.94993 0.94880 0.99474 1.69961 1.34868 1.19001 1.29589 0.86508 0.79017 0.78397 0.83612 1.20572 1.21197 1.19717 1.22513 0.96235 0.99247 0.93511 1.23044 0.96135 1.02463 0.96262 1.22796 0.97639 1.00946 0.96705 1.23065 0.97435 1.00217 0.96931 0.92427 0.92543 0.92401 0.92034 0.92440 0.92108 0.91820 0.92026 0.77324 0.77513 0.92851 0.92867 0.96011 0.95997 0.92890 0.89108 0.89614 0.91449 0.90443 0.91675 0.91820 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.20 37.16 0.30 -0.79 16 2 C -0.07 -0.54 0.44 -154.51 -0.07 -0.61 16 3 C -0.15 -1.13 7.40 37.16 0.27 -0.85 16 4 C 0.15 1.77 4.41 -4.04 -0.02 1.75 16 5 N -0.75 -9.81 4.94 -65.22 -0.32 -10.14 16 6 C 0.70 12.62 8.57 -86.92 -0.74 11.88 16 7 O -0.60 -13.37 16.34 5.29 0.09 -13.28 16 8 N -0.74 -13.50 5.56 -65.23 -0.36 -13.86 16 9 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 10 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 11 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.10 -0.72 3.04 -89.81 -0.27 -0.99 16 20 C -0.14 -1.08 6.66 -25.92 -0.17 -1.25 16 21 C -0.14 -0.94 8.08 -25.92 -0.21 -1.15 16 22 C -0.14 -0.90 7.20 -25.92 -0.19 -1.09 16 23 H 0.06 0.39 7.99 -51.93 -0.42 -0.02 16 24 H 0.06 0.44 7.02 -51.93 -0.36 0.08 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.49 6.05 -51.93 -0.31 0.17 16 27 H 0.06 0.46 6.71 -51.93 -0.35 0.11 16 28 H 0.06 0.40 6.45 -51.93 -0.33 0.06 16 29 H 0.06 0.81 7.57 -51.93 -0.39 0.42 16 30 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.39 4.14 6.21 -40.82 -0.25 3.88 16 32 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.67 6.09 -51.93 -0.32 0.36 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.55 5.69 -51.93 -0.30 0.25 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -32.14 344.11 -8.94 -41.08 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.57 Total: 3.29 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.67 Total: -3.22 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.05 Total: -49.63 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.14 -8.94 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454786678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.061 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds