Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 C 1.53000 * 109.47231 * 240.00280 * 2 1 3 5 5 N 1.46499 * 109.47307 * 59.99397 * 4 2 1 6 6 C 1.34772 * 120.00163 * 179.97438 * 5 4 2 7 7 O 1.21591 * 119.99780 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00256 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00300 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47415 * 179.97438 * 9 8 6 11 11 C 1.50694 * 109.47264 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00023 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99864 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99942 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47045 * 90.00177 * 15 13 11 17 17 H 1.48500 * 109.47418 * 210.00040 * 15 13 11 18 18 H 1.48504 * 109.47239 * 330.00321 * 15 13 11 19 19 C 1.52998 * 109.47023 * 119.99962 * 2 1 3 20 20 C 1.53782 * 113.61238 * 183.79176 * 19 2 1 21 21 C 1.53782 * 87.07854 * 139.98266 * 20 19 2 22 22 C 1.53776 * 87.08286 * 334.56898 * 21 20 19 23 23 H 1.09001 * 109.47225 * 294.67148 * 1 2 3 24 24 H 1.09000 * 109.47239 * 54.67366 * 1 2 3 25 25 H 1.09000 * 109.47322 * 174.67160 * 1 2 3 26 26 H 1.09003 * 109.46980 * 173.66619 * 3 2 1 27 27 H 1.08998 * 109.47417 * 293.66441 * 3 2 1 28 28 H 1.08997 * 109.47447 * 53.66757 * 3 2 1 29 29 H 1.08996 * 109.47212 * 180.02562 * 4 2 1 30 30 H 1.09008 * 109.46655 * 300.00198 * 4 2 1 31 31 H 0.97000 * 120.00077 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99877 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.47283 * 300.00392 * 9 8 6 34 34 H 1.09006 * 109.46914 * 60.00355 * 9 8 6 35 35 H 1.08998 * 109.47564 * 300.00648 * 10 9 8 36 36 H 1.09006 * 109.46440 * 60.00493 * 10 9 8 37 37 H 0.97003 * 119.99611 * 180.02562 * 14 13 11 38 38 H 1.08998 * 112.90780 * 52.54618 * 19 2 1 39 39 H 1.09000 * 113.61445 * 25.43597 * 20 19 2 40 40 H 1.08998 * 113.69556 * 254.53888 * 20 19 2 41 41 H 1.08999 * 113.61482 * 89.11897 * 21 20 19 42 42 H 1.09000 * 113.61535 * 220.02169 * 21 20 19 43 43 H 1.08996 * 113.61705 * 139.97927 * 22 21 20 44 44 H 1.09007 * 113.61658 * 270.88413 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5516 -0.0306 -2.4454 6 6 1.8776 -0.4907 -3.6695 7 8 2.5768 -1.4793 -3.7811 8 7 1.4287 0.1448 -4.7700 9 6 1.7826 -0.3556 -6.1005 10 6 1.1493 0.5398 -7.1674 11 6 1.5129 0.0246 -8.5360 12 1 2.1332 -0.8538 -8.6351 13 6 1.0535 0.6748 -9.6618 14 7 0.2985 1.7449 -9.5411 15 14 1.5048 0.0366 -11.3584 16 1 0.4810 -0.9405 -11.8081 17 1 1.5605 1.1708 -12.3153 18 1 2.8316 -0.6280 -11.3006 19 6 2.0400 -0.7212 1.2492 20 6 3.5709 -0.6966 1.3929 21 6 3.3473 -0.4687 2.8972 22 6 1.9852 0.1390 2.5227 23 1 -0.3634 0.4290 0.9339 24 1 -0.3634 0.5942 -0.8384 25 1 -0.3634 -1.0232 -0.0954 26 1 3.1240 1.4447 0.1134 27 1 1.7721 1.9226 -0.9412 28 1 1.5870 1.9881 0.8278 29 1 3.1300 -0.7216 -1.2490 30 1 1.6766 -1.7489 -1.2493 31 1 0.9942 0.7582 -2.3564 32 1 0.8707 0.9332 -4.6810 33 1 2.8665 -0.3474 -6.2154 34 1 1.4128 -1.3745 -6.2157 35 1 0.0655 0.5312 -7.0524 36 1 1.5188 1.5589 -7.0523 37 1 -0.0249 2.2020 -10.3331 38 1 1.6057 -1.7132 1.3734 39 1 4.0432 0.1467 0.8890 40 1 4.0479 -1.6490 1.1618 41 1 3.2704 -1.3917 3.4720 42 1 4.0393 0.2490 3.3377 43 1 1.1808 -0.1395 3.2035 44 1 2.0240 1.2107 2.3277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454786678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = -56.242617 kcal Electronic energy + Delta-G solvation = -20525.745943 eV Core-core repulsion = 17477.010584 eV Total energy + Delta-G solvation = -3048.735359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36084 -40.40674 -37.07594 -36.34866 -34.82562 -33.72592 -31.34816 -28.24220 -28.01337 -26.74684 -26.12112 -25.51708 -22.92848 -21.98100 -21.08862 -19.68389 -18.96118 -18.42810 -17.19554 -16.78596 -16.58395 -16.41575 -16.00183 -15.61496 -15.48236 -15.03304 -14.66783 -14.49070 -14.25680 -13.77827 -13.54952 -13.28563 -13.20649 -12.93042 -12.70270 -12.52188 -12.47302 -12.33238 -12.22036 -11.90363 -11.76836 -11.67383 -11.51141 -11.27202 -11.12611 -10.90758 -10.80948 -10.60138 -10.31721 -9.68288 -8.23728 -6.33876 1.42221 1.42868 1.54298 1.80445 2.18822 2.41952 3.11086 3.39632 3.57004 3.72325 3.79852 3.99848 4.09340 4.20692 4.27990 4.45819 4.48874 4.52618 4.68835 4.73900 4.84326 4.87086 4.89303 4.91967 4.96255 5.07693 5.09334 5.13640 5.18576 5.24334 5.31982 5.37640 5.43576 5.49472 5.52092 5.55796 5.60111 5.74304 5.79677 6.06583 6.18016 6.79279 7.14716 7.35408 7.62156 8.88277 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051351 B = 0.002789 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.138915 B =10037.129102 C =10280.615046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.147 4.147 4 C 0.152 3.848 5 N -0.728 5.728 6 C 0.695 3.305 7 O -0.643 6.643 8 N -0.734 5.734 9 C 0.161 3.839 10 C 0.025 3.975 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.098 4.098 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.131 4.131 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.408 0.592 32 H 0.406 0.594 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 0.266 26.037 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 C -0.204 4.204 4 C 0.027 3.973 5 N -0.386 5.386 6 C 0.395 3.605 7 O -0.525 6.525 8 N -0.389 5.389 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.117 4.117 20 C -0.186 4.186 21 C -0.178 4.178 22 C -0.169 4.169 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.245 0.755 32 H 0.242 0.758 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.423 -0.499 25.842 25.886 hybrid contribution -0.299 0.323 -1.141 1.223 sum 1.124 -0.175 24.701 24.728 Atomic orbital electron populations 1.21846 0.93337 1.01961 1.02597 1.20630 0.96446 0.95938 0.92526 1.22051 1.01534 0.94477 1.02371 1.21223 0.98225 0.95265 0.82546 1.45022 1.56658 1.33614 1.03280 1.16213 0.80192 0.82615 0.81462 1.90855 1.45057 1.29764 1.86820 1.45210 1.55891 1.32921 1.04845 1.21059 0.98344 0.97211 0.79754 1.19120 0.95400 0.94468 0.92287 1.21467 1.32225 1.12809 0.92001 0.92349 1.25872 0.94737 0.95008 1.03566 1.70059 1.35622 1.20017 1.30928 0.85439 0.78973 0.78026 0.78574 1.19737 1.20448 1.19114 1.22527 0.96010 0.99454 0.93665 1.23077 0.96211 1.01911 0.97377 1.22793 0.97866 1.01315 0.95790 1.23040 0.97524 1.00245 0.96042 0.90826 0.92533 0.93071 0.92310 0.92784 0.90364 0.92991 0.93289 0.75462 0.75846 0.93962 0.93965 0.97291 0.97272 0.92530 0.89285 0.89918 0.92366 0.90069 0.91147 0.91026 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.20 71.98 0.59 -1.31 16 2 C -0.05 -0.82 0.44 -52.18 -0.02 -0.84 16 3 C -0.15 -1.96 7.40 71.98 0.53 -1.42 16 4 C 0.15 3.45 4.41 86.38 0.38 3.83 16 5 N -0.73 -18.47 4.94 -478.53 -2.36 -20.83 16 6 C 0.70 25.10 8.57 179.06 1.53 26.63 16 7 O -0.64 -29.02 16.34 -4.00 -0.07 -29.09 16 8 N -0.73 -26.65 5.56 -478.53 -2.66 -29.31 16 9 C 0.16 7.19 5.61 86.38 0.48 7.67 16 10 C 0.02 1.27 5.09 29.85 0.15 1.42 16 11 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.01 0.39 5.46 84.66 0.46 0.85 16 14 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 15 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.10 -1.32 3.04 -10.27 -0.03 -1.35 16 20 C -0.15 -2.13 6.66 31.12 0.21 -1.92 16 21 C -0.14 -1.60 8.08 31.12 0.25 -1.34 16 22 C -0.13 -1.39 7.20 31.12 0.22 -1.16 16 23 H 0.07 0.79 7.99 -2.39 -0.02 0.78 16 24 H 0.06 0.77 7.02 -2.39 -0.02 0.75 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.83 6.05 -2.39 -0.01 0.82 16 27 H 0.05 0.76 6.71 -2.39 -0.02 0.74 16 28 H 0.08 0.79 6.45 -2.39 -0.02 0.78 16 29 H 0.05 1.33 7.57 -2.39 -0.02 1.31 16 30 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.41 7.95 6.21 -92.71 -0.58 7.38 16 32 H 0.41 12.44 8.49 -92.71 -0.79 11.65 16 33 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.23 6.09 -2.39 -0.01 1.22 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 0.89 5.69 -2.38 -0.01 0.88 16 Total: -1.00 -68.48 344.11 1.84 -66.64 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.38 Total: 20.59 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.00 Total: 0.32 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -4.74 Total: -104.48 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.07 Total: -29.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.48 1.84 -66.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454786678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.398 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds