Wall clock time and date at job start Mon Mar 30 2020 00:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47042 * 2 1 4 4 C 1.52995 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47452 * 54.99814 * 4 3 2 6 6 N 1.46500 * 109.47327 * 294.99752 * 4 3 2 7 7 C 1.34773 * 120.00431 * 155.00306 * 6 4 3 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46843 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99981 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99570 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00351 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99771 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46867 * 90.00067 * 16 14 12 18 18 H 1.48501 * 109.47216 * 209.99924 * 16 14 12 19 19 H 1.48499 * 109.47135 * 330.00265 * 16 14 12 20 20 C 1.53008 * 109.47295 * 174.99870 * 4 3 2 21 21 C 1.53785 * 113.60935 * 279.13654 * 20 4 3 22 22 C 1.53962 * 87.01637 * 220.04415 * 21 20 4 23 23 C 1.53774 * 113.61626 * 181.53011 * 20 4 3 24 24 H 1.09003 * 109.47445 * 300.00465 * 1 2 3 25 25 H 1.09002 * 109.47282 * 60.00507 * 1 2 3 26 26 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47445 * 239.99535 * 2 1 3 28 28 H 1.09002 * 109.47282 * 119.99493 * 2 1 3 29 29 H 1.08994 * 109.47635 * 59.99523 * 3 2 1 30 30 H 1.09007 * 109.46673 * 299.99380 * 3 2 1 31 31 H 0.97000 * 119.99456 * 334.99869 * 6 4 3 32 32 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 33 33 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 34 34 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 35 35 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 36 36 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 37 37 H 0.96996 * 120.00389 * 180.02562 * 15 14 12 38 38 H 1.08996 * 112.85066 * 50.32702 * 20 4 3 39 39 H 1.08997 * 113.61728 * 334.56395 * 21 20 4 40 40 H 1.09001 * 113.61347 * 105.47392 * 21 20 4 41 41 H 1.08998 * 113.53770 * 270.81583 * 22 21 20 42 42 H 1.08999 * 113.74099 * 139.94371 * 22 21 20 43 43 H 1.08999 * 113.61510 * 254.52644 * 23 20 4 44 44 H 1.09005 * 113.61542 * 25.42773 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8409 6 7 4.0577 0.8590 1.2528 7 6 5.2797 0.2926 1.3012 8 8 5.9771 0.2653 0.3055 9 7 5.7306 -0.2393 2.4546 10 6 7.0614 -0.8497 2.5087 11 6 7.3257 -1.3719 3.9224 12 6 8.6948 -1.9992 3.9782 13 1 9.3142 -2.0234 3.0938 14 6 9.1566 -2.5423 5.1584 15 7 8.4025 -2.5124 6.2355 16 14 10.8533 -3.3205 5.2275 17 1 11.8559 -2.2898 5.5987 18 1 10.8596 -4.4050 6.2420 19 1 11.1934 -3.8853 3.8969 20 6 4.0800 2.8796 -0.1251 21 6 4.0750 3.4108 -1.5683 22 6 5.4261 4.0738 -1.2435 23 6 5.6133 2.9871 -0.1717 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.5012 0.8805 2.0470 32 1 5.1741 -0.2178 3.2488 33 1 7.1109 -1.6766 1.8003 34 1 7.8137 -0.1045 2.2505 35 1 7.2763 -0.5446 4.6304 36 1 6.5733 -2.1170 4.1810 37 1 8.7275 -2.8941 7.0659 38 1 3.6163 3.5576 0.5913 39 1 4.1434 2.6269 -2.3224 40 1 3.2749 4.1235 -1.7684 41 1 5.3302 5.0793 -0.8337 42 1 6.1503 4.0151 -2.0560 43 1 6.0533 3.3581 0.7540 44 1 6.1031 2.0870 -0.5433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458653473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:42 Heat of formation + Delta-G solvation = -44.261701 kcal Electronic energy + Delta-G solvation = -20786.518579 eV Core-core repulsion = 17738.302752 eV Total energy + Delta-G solvation = -3048.215827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16108 -38.36319 -35.96900 -34.70156 -33.31344 -32.71423 -30.07509 -28.71190 -25.78811 -25.37707 -24.61696 -22.25888 -21.30728 -20.75730 -20.42295 -19.38622 -17.85104 -16.48841 -16.08854 -15.58777 -15.34974 -14.98529 -14.48815 -14.40363 -14.18735 -13.66632 -13.42298 -13.11017 -12.94204 -12.31813 -12.28698 -12.20027 -12.01012 -11.66444 -11.52378 -11.16414 -11.14594 -10.99872 -10.83240 -10.68303 -10.60098 -10.30000 -10.27193 -10.03260 -9.76362 -9.49967 -9.22336 -8.73787 -8.45191 -8.17673 -6.07162 -4.09616 3.13726 3.31094 3.37205 3.41987 3.67247 4.39872 4.44416 4.66579 4.70302 4.82244 4.86785 4.88926 4.93766 5.08878 5.25634 5.29982 5.41589 5.44146 5.54111 5.62592 5.68266 5.77966 5.89014 5.91294 5.92630 5.95068 6.06912 6.16841 6.21858 6.31886 6.40042 6.44213 6.67445 6.80786 6.83372 7.10223 7.34128 7.60999 7.66603 7.92445 8.29425 8.52854 8.95937 9.10815 9.55053 11.04536 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003641 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.401539 B = 7687.612612 C = 8632.676450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.125 4.125 4 C 0.174 3.826 5 H 0.087 0.913 6 N -0.746 5.746 7 C 0.700 3.300 8 O -0.595 6.595 9 N -0.741 5.741 10 C 0.142 3.858 11 C 0.013 3.987 12 C -0.520 4.520 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.137 4.137 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.391 0.609 32 H 0.392 0.608 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.423 10.530 -11.821 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.163 4.163 4 C 0.069 3.931 5 H 0.105 0.895 6 N -0.401 5.401 7 C 0.400 3.600 8 O -0.474 6.474 9 N -0.394 5.394 10 C 0.019 3.981 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.143 4.143 21 C -0.168 4.168 22 C -0.184 4.184 23 C -0.174 4.174 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.224 0.776 32 H 0.224 0.776 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.744 10.417 -12.553 21.988 hybrid contribution 0.347 -0.334 1.056 1.160 sum -14.398 10.083 -11.498 21.004 Atomic orbital electron populations 1.21774 0.95995 1.01576 1.01562 1.21529 0.95492 0.96628 1.02646 1.21894 0.94286 0.97353 1.02749 1.20819 0.92486 0.92739 0.87079 0.89542 1.45186 1.17579 1.63874 1.13478 1.16036 0.81397 0.78307 0.84227 1.90795 1.57354 1.64609 1.34662 1.45538 1.20520 1.62702 1.10620 1.21547 0.79826 0.95903 1.00850 1.19321 0.97437 0.96394 0.89315 1.21060 1.00663 1.37823 0.96310 0.92242 1.24994 0.97692 0.96005 0.95615 1.69955 1.36926 1.45731 1.00787 0.86519 0.84178 0.78984 0.77917 1.20578 1.21202 1.19708 1.22979 0.97752 0.96347 0.97208 1.22880 0.97537 0.99959 0.96407 1.22860 0.97473 0.98340 0.99700 1.23176 0.95451 1.00224 0.98596 0.92848 0.92911 0.92835 0.91952 0.91668 0.91614 0.90580 0.77574 0.77557 0.92909 0.92897 0.96047 0.96040 0.92893 0.89870 0.90107 0.91945 0.90957 0.91784 0.92646 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.09 5.82 -26.73 -0.16 -1.24 16 3 C -0.12 -1.03 4.74 -26.73 -0.13 -1.16 16 4 C 0.17 1.93 1.92 -67.93 -0.13 1.80 16 5 H 0.09 1.15 7.41 -51.93 -0.38 0.77 16 6 N -0.75 -9.28 4.50 -58.67 -0.26 -9.54 16 7 C 0.70 11.92 7.89 -86.92 -0.69 11.23 16 8 O -0.59 -12.11 13.16 5.28 0.07 -12.04 16 9 N -0.74 -13.09 5.56 -65.22 -0.36 -13.45 16 10 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 11 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 12 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 16 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.12 -1.34 3.31 -89.80 -0.30 -1.64 16 21 C -0.13 -1.26 7.58 -25.82 -0.20 -1.46 16 22 C -0.15 -1.59 8.09 -25.82 -0.21 -1.80 16 23 C -0.14 -1.85 6.50 -25.92 -0.17 -2.02 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.62 7.75 -51.93 -0.40 0.22 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.39 3.96 8.62 -40.82 -0.35 3.61 16 32 H 0.39 6.03 8.49 -40.82 -0.35 5.68 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.11 1.87 5.52 -51.93 -0.29 1.58 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -30.88 352.31 -9.78 -40.66 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.07 Total: 5.23 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.18 Total: -7.11 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.11 Total: -48.55 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.88 -9.78 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458653473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.602 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds