Wall clock time and date at job start Mon Mar 30 2020 00:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47042 * 2 1 4 4 C 1.52995 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47452 * 54.99814 * 4 3 2 6 6 N 1.46500 * 109.47327 * 294.99752 * 4 3 2 7 7 C 1.34773 * 120.00431 * 155.00306 * 6 4 3 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46843 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99981 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99570 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00351 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99771 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46867 * 90.00067 * 16 14 12 18 18 H 1.48501 * 109.47216 * 209.99924 * 16 14 12 19 19 H 1.48499 * 109.47135 * 330.00265 * 16 14 12 20 20 C 1.53008 * 109.47295 * 174.99870 * 4 3 2 21 21 C 1.53785 * 113.60935 * 279.13654 * 20 4 3 22 22 C 1.53962 * 87.01637 * 220.04415 * 21 20 4 23 23 C 1.53774 * 113.61626 * 181.53011 * 20 4 3 24 24 H 1.09003 * 109.47445 * 300.00465 * 1 2 3 25 25 H 1.09002 * 109.47282 * 60.00507 * 1 2 3 26 26 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47445 * 239.99535 * 2 1 3 28 28 H 1.09002 * 109.47282 * 119.99493 * 2 1 3 29 29 H 1.08994 * 109.47635 * 59.99523 * 3 2 1 30 30 H 1.09007 * 109.46673 * 299.99380 * 3 2 1 31 31 H 0.97000 * 119.99456 * 334.99869 * 6 4 3 32 32 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 33 33 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 34 34 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 35 35 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 36 36 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 37 37 H 0.96996 * 120.00389 * 180.02562 * 15 14 12 38 38 H 1.08996 * 112.85066 * 50.32702 * 20 4 3 39 39 H 1.08997 * 113.61728 * 334.56395 * 21 20 4 40 40 H 1.09001 * 113.61347 * 105.47392 * 21 20 4 41 41 H 1.08998 * 113.53770 * 270.81583 * 22 21 20 42 42 H 1.08999 * 113.74099 * 139.94371 * 22 21 20 43 43 H 1.08999 * 113.61510 * 254.52644 * 23 20 4 44 44 H 1.09005 * 113.61542 * 25.42773 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8409 6 7 4.0577 0.8590 1.2528 7 6 5.2797 0.2926 1.3012 8 8 5.9771 0.2653 0.3055 9 7 5.7306 -0.2393 2.4546 10 6 7.0614 -0.8497 2.5087 11 6 7.3257 -1.3719 3.9224 12 6 8.6948 -1.9992 3.9782 13 1 9.3142 -2.0234 3.0938 14 6 9.1566 -2.5423 5.1584 15 7 8.4025 -2.5124 6.2355 16 14 10.8533 -3.3205 5.2275 17 1 11.8559 -2.2898 5.5987 18 1 10.8596 -4.4050 6.2420 19 1 11.1934 -3.8853 3.8969 20 6 4.0800 2.8796 -0.1251 21 6 4.0750 3.4108 -1.5683 22 6 5.4261 4.0738 -1.2435 23 6 5.6133 2.9871 -0.1717 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.5012 0.8805 2.0470 32 1 5.1741 -0.2178 3.2488 33 1 7.1109 -1.6766 1.8003 34 1 7.8137 -0.1045 2.2505 35 1 7.2763 -0.5446 4.6304 36 1 6.5733 -2.1170 4.1810 37 1 8.7275 -2.8941 7.0659 38 1 3.6163 3.5576 0.5913 39 1 4.1434 2.6269 -2.3224 40 1 3.2749 4.1235 -1.7684 41 1 5.3302 5.0793 -0.8337 42 1 6.1503 4.0151 -2.0560 43 1 6.0533 3.3581 0.7540 44 1 6.1031 2.0870 -0.5433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458653473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:41 Heat of formation + Delta-G solvation = -63.192137 kcal Electronic energy + Delta-G solvation = -20787.339464 eV Core-core repulsion = 17738.302752 eV Total energy + Delta-G solvation = -3049.036713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34959 -39.51377 -36.93870 -36.37332 -34.80936 -34.21884 -31.63619 -29.98297 -26.78846 -26.42825 -26.22154 -23.39860 -22.70424 -21.99767 -21.61740 -20.33316 -19.23539 -18.41392 -17.41066 -16.79998 -16.50839 -16.25143 -15.93012 -15.72451 -15.36893 -15.03960 -14.66341 -14.34162 -14.26849 -13.75027 -13.26121 -13.18813 -12.98211 -12.91878 -12.87635 -12.52414 -12.47343 -12.34139 -12.19404 -11.85545 -11.69083 -11.57484 -11.48257 -11.44626 -11.25274 -10.98220 -10.91613 -10.59715 -10.06019 -9.58473 -8.23859 -6.34143 1.41728 1.42363 1.53862 1.86300 2.28114 2.41731 3.10871 3.40210 3.65905 3.83431 3.89188 4.03352 4.14647 4.17600 4.25270 4.44395 4.51550 4.53723 4.67511 4.74055 4.83571 4.87801 4.87952 4.95588 4.98204 5.04126 5.10043 5.14438 5.17757 5.30647 5.34122 5.36296 5.42082 5.51166 5.54784 5.60282 5.68332 5.79380 5.81268 6.14715 6.18572 6.79102 7.22930 7.35422 7.73513 8.88112 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003641 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.401539 B = 7687.612612 C = 8632.676450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.113 4.113 4 C 0.173 3.827 5 H 0.061 0.939 6 N -0.726 5.726 7 C 0.698 3.302 8 O -0.629 6.629 9 N -0.738 5.738 10 C 0.164 3.836 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.142 4.142 23 C -0.152 4.152 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.406 0.594 32 H 0.404 0.596 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.266 0.734 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.777 11.546 -12.228 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.151 4.151 4 C 0.068 3.932 5 H 0.079 0.921 6 N -0.382 5.382 7 C 0.398 3.602 8 O -0.511 6.511 9 N -0.392 5.392 10 C 0.039 3.961 11 C -0.013 4.013 12 C -0.585 4.585 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.566 5.566 16 Si 0.789 3.211 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.135 4.135 21 C -0.156 4.156 22 C -0.179 4.179 23 C -0.189 4.189 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.242 0.758 32 H 0.239 0.761 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.156 11.455 -12.955 23.666 hybrid contribution 0.745 -0.632 1.169 1.524 sum -15.411 10.823 -11.786 22.216 Atomic orbital electron populations 1.21741 0.94637 1.01752 1.02421 1.21519 0.96656 0.96727 1.01493 1.21842 0.91449 0.97370 1.04440 1.20957 0.94560 0.92385 0.85288 0.92053 1.45056 1.15894 1.62400 1.14829 1.16149 0.82430 0.78317 0.83268 1.90791 1.58707 1.65812 1.35758 1.45237 1.19417 1.62895 1.11684 1.20993 0.81604 0.95159 0.98302 1.19118 0.96118 0.95299 0.90756 1.21468 1.01981 1.38452 0.96594 0.92386 1.25866 1.01755 0.96362 0.95151 1.70056 1.38797 1.46404 1.01363 0.85449 0.79227 0.78216 0.78189 1.19759 1.20437 1.19074 1.22980 0.95426 0.96375 0.98708 1.22821 0.97506 1.00049 0.95236 1.22874 0.98230 0.98240 0.98556 1.23096 0.97343 0.99880 0.98607 0.92029 0.91968 0.93097 0.93200 0.92866 0.89861 0.88792 0.75810 0.76103 0.94098 0.94170 0.97461 0.97393 0.92544 0.88148 0.90541 0.89216 0.89426 0.92097 0.94485 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.98 5.82 30.59 0.18 -1.80 16 3 C -0.11 -1.56 4.74 30.59 0.14 -1.41 16 4 C 0.17 3.62 1.92 44.99 0.09 3.71 16 5 H 0.06 1.64 7.41 -2.39 -0.02 1.62 16 6 N -0.73 -17.57 4.50 -457.80 -2.06 -19.63 16 7 C 0.70 24.14 7.89 179.06 1.41 25.56 16 8 O -0.63 -26.55 13.16 -4.01 -0.05 -26.60 16 9 N -0.74 -26.51 5.56 -478.52 -2.66 -29.17 16 10 C 0.16 7.31 5.61 86.38 0.48 7.80 16 11 C 0.02 1.27 5.09 29.85 0.15 1.42 16 12 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.01 0.42 5.46 84.65 0.46 0.88 16 15 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 16 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C -0.12 -2.31 3.31 -10.27 -0.03 -2.35 16 21 C -0.12 -2.02 7.58 31.18 0.24 -1.79 16 22 C -0.14 -2.91 8.09 31.18 0.25 -2.65 16 23 C -0.15 -4.14 6.50 31.12 0.20 -3.94 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.95 7.75 -2.39 -0.02 0.94 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.04 8.09 -2.38 -0.02 1.02 16 31 H 0.41 7.56 8.62 -92.71 -0.80 6.76 16 32 H 0.40 12.44 8.49 -92.71 -0.79 11.65 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 1.39 7.99 -2.39 -0.02 1.37 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 2.70 5.52 -2.38 -0.01 2.68 16 Total: -1.00 -67.78 352.31 1.44 -66.34 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.62 Total: 23.97 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 4.53 Total: -6.52 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -4.44 Total: -103.31 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.78 1.44 -66.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458653473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.147 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds