Wall clock time and date at job start Mon Mar 30 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47144 * 2 1 4 4 C 1.52995 * 109.47436 * 120.00065 * 2 1 3 5 5 H 1.09009 * 113.01683 * 292.15834 * 4 2 1 6 6 C 1.53946 * 113.74606 * 160.49487 * 4 2 1 7 7 N 1.47576 * 86.24123 * 269.20457 * 6 4 2 8 8 C 1.34774 * 134.49575 * 155.41994 * 7 6 4 9 9 O 1.21576 * 120.00510 * 180.02562 * 8 7 6 10 10 N 1.34785 * 119.99466 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99550 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46748 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00490 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99764 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00451 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46767 * 60.00282 * 16 14 12 18 18 H 1.48496 * 109.46942 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46932 * 300.00365 * 16 14 12 20 20 C 1.47809 * 90.92532 * 335.45798 * 7 6 4 21 21 H 1.08998 * 113.83569 * 138.86984 * 20 7 6 22 22 C 1.52995 * 113.66795 * 270.23498 * 20 7 6 23 23 C 1.53002 * 109.47301 * 161.24223 * 22 20 7 24 24 C 1.53004 * 109.47065 * 281.24395 * 22 20 7 25 25 H 1.09000 * 109.46784 * 299.99738 * 1 2 3 26 26 H 1.08999 * 109.47100 * 59.99939 * 1 2 3 27 27 H 1.09004 * 109.46772 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47243 * 240.00172 * 2 1 3 29 29 H 1.08996 * 109.46989 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46800 * 300.00087 * 3 2 1 31 31 H 1.08996 * 109.46910 * 59.99968 * 3 2 1 32 32 H 1.08998 * 113.76699 * 23.56197 * 6 4 2 33 33 H 1.09001 * 113.77381 * 154.84395 * 6 4 2 34 34 H 0.96995 * 120.00053 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47137 * 299.99884 * 11 10 8 36 36 H 1.09000 * 109.47169 * 60.00308 * 11 10 8 37 37 H 0.96996 * 120.00863 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47333 * 41.24092 * 22 20 7 39 39 H 1.09002 * 109.46794 * 179.97438 * 23 22 20 40 40 H 1.09001 * 109.46865 * 299.99617 * 23 22 20 41 41 H 1.09002 * 109.47233 * 60.00186 * 23 22 20 42 42 H 1.08995 * 109.47005 * 65.26362 * 24 22 20 43 43 H 1.09007 * 109.46902 * 185.26281 * 24 22 20 44 44 H 1.08998 * 109.46710 * 305.26184 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.8254 -0.1805 2.1710 6 6 3.4990 -1.1995 1.1366 7 7 2.9427 -2.4611 0.6105 8 6 3.4147 -3.4435 -0.1824 9 8 2.7088 -4.3942 -0.4580 10 7 4.6693 -3.3718 -0.6698 11 6 5.1825 -4.4400 -1.5312 12 6 6.5984 -4.1213 -1.9370 13 1 7.0688 -3.2137 -1.5884 14 6 7.2933 -4.9884 -2.7532 15 7 6.7204 -6.0933 -3.1780 16 14 9.0483 -4.5930 -3.2568 17 1 9.8982 -4.4829 -2.0441 18 1 9.5685 -5.6758 -4.1298 19 1 9.0727 -3.3060 -3.9971 20 6 1.6606 -2.2122 1.3025 21 1 0.7827 -2.4636 0.7072 22 6 1.6066 -2.7846 2.7203 23 6 0.4838 -2.1015 3.5037 24 6 1.3391 -4.2895 2.6530 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 4.0890 -0.6423 0.4089 33 1 4.0013 -1.3079 2.0978 34 1 5.2323 -2.6132 -0.4502 35 1 5.1644 -5.3849 -0.9882 36 1 4.5584 -4.5204 -2.4212 37 1 7.2091 -6.7032 -3.7525 38 1 2.5587 -2.6068 3.2204 39 1 0.4452 -2.5096 4.5137 40 1 0.6745 -1.0294 3.5517 41 1 -0.4683 -2.2793 3.0037 42 1 2.1838 -4.7877 2.1772 43 1 1.2078 -4.6807 3.6619 44 1 0.4352 -4.4722 2.0719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458714295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:56 Heat of formation + Delta-G solvation = -26.561104 kcal Electronic energy + Delta-G solvation = -21492.682199 eV Core-core repulsion = 18445.233927 eV Total energy + Delta-G solvation = -3047.448272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68306 -37.91635 -35.14133 -34.00712 -33.82111 -32.16638 -28.90691 -27.55086 -27.20623 -26.43849 -25.37682 -23.13687 -22.25963 -20.38599 -19.88929 -18.56457 -17.76830 -16.00819 -15.83066 -15.58662 -14.86785 -14.53129 -14.22635 -14.17135 -13.85118 -13.51088 -13.24734 -13.03826 -12.77971 -12.35896 -12.16527 -12.10679 -11.98202 -11.81215 -11.73714 -11.54168 -11.32845 -11.03808 -10.92358 -10.92076 -10.85653 -10.67037 -10.54232 -10.25931 -10.14341 -9.34396 -9.20886 -8.68089 -8.29135 -7.63758 -6.11672 -4.18134 3.06148 3.27812 3.32493 3.34469 4.00060 4.23068 4.34216 4.52588 4.77848 4.93234 4.95461 4.97674 5.09963 5.22843 5.24102 5.27053 5.44019 5.46637 5.54570 5.55037 5.63232 5.66321 5.73010 5.75549 5.78475 5.89296 5.93470 6.02073 6.03285 6.13379 6.19020 6.23332 6.36458 6.41075 6.50681 7.32140 7.58781 7.62173 7.70020 8.00486 8.15913 8.81967 9.00714 9.40801 9.56608 10.98591 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.004547 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.355031 B = 6156.407098 C = 6862.846392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.113 4.113 5 H 0.090 0.910 6 C 0.103 3.897 7 N -0.661 5.661 8 C 0.717 3.283 9 O -0.597 6.597 10 N -0.728 5.728 11 C 0.269 3.731 12 C -0.541 4.541 13 H 0.061 0.939 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.164 3.836 21 H 0.086 0.914 22 C -0.098 4.098 23 C -0.142 4.142 24 C -0.142 4.142 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.384 0.616 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.266 0.734 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.923 14.595 12.141 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.201 4.201 4 C -0.132 4.132 5 H 0.108 0.892 6 C -0.020 4.020 7 N -0.402 5.402 8 C 0.420 3.580 9 O -0.476 6.476 10 N -0.380 5.380 11 C 0.148 3.852 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.060 3.940 21 H 0.104 0.896 22 C -0.118 4.118 23 C -0.200 4.200 24 C -0.199 4.199 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.216 0.784 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.286 13.486 11.609 21.071 hybrid contribution 1.405 0.365 -0.212 1.467 sum -9.881 13.851 11.396 20.478 Atomic orbital electron populations 1.21812 0.95041 1.01931 1.01504 1.20870 0.95753 0.95752 0.97332 1.21803 1.01189 0.95605 1.01549 1.23097 0.95806 0.95188 0.99109 0.89231 1.23102 0.96102 0.84140 0.98679 1.49297 1.16948 1.22586 1.51353 1.15704 0.82623 0.80938 0.78768 1.90861 1.58540 1.33126 1.65063 1.45675 1.11775 1.27110 1.53417 1.18952 0.93119 0.84691 0.88480 1.21186 0.97878 1.07331 1.31525 0.92115 1.24936 0.98643 0.94751 0.95629 1.69967 1.37460 1.10943 1.33973 0.86482 0.83902 0.78006 0.78538 1.20112 1.21069 1.20108 1.22591 0.88064 0.91451 0.91923 0.89599 1.21309 0.99468 0.96351 0.94690 1.21786 0.98287 1.00192 0.99690 1.21734 1.02651 0.94630 1.00894 0.92739 0.92717 0.92468 0.90570 0.92546 0.92701 0.92784 0.90553 0.90583 0.78381 0.95878 0.95874 0.92439 0.90956 0.92533 0.92493 0.92515 0.91965 0.93136 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.03 37.16 0.34 -0.99 16 2 C -0.08 -0.80 2.58 -90.62 -0.23 -1.03 16 3 C -0.14 -1.21 9.16 37.16 0.34 -0.87 16 4 C -0.11 -1.14 2.74 -89.68 -0.25 -1.39 16 5 H 0.09 0.72 6.74 -51.92 -0.35 0.37 16 6 C 0.10 1.23 7.58 -2.98 -0.02 1.21 16 7 N -0.66 -10.78 3.28 -175.57 -0.58 -11.35 16 8 C 0.72 15.83 8.76 -86.91 -0.76 15.07 16 9 O -0.60 -15.67 17.06 5.30 0.09 -15.58 16 10 N -0.73 -16.62 5.55 -66.41 -0.37 -16.99 16 11 C 0.27 7.47 5.43 -5.19 -0.03 7.44 16 12 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 13 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.16 2.13 3.11 -66.74 -0.21 1.93 16 21 H 0.09 1.23 6.67 -51.93 -0.35 0.88 16 22 C -0.10 -1.13 2.78 -90.62 -0.25 -1.38 16 23 C -0.14 -1.21 9.04 37.16 0.34 -0.87 16 24 C -0.14 -1.93 9.19 37.16 0.34 -1.59 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 6.69 -51.93 -0.35 0.22 16 28 H 0.08 0.99 8.01 -51.93 -0.42 0.58 16 29 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.87 7.84 -51.93 -0.41 0.47 16 33 H 0.08 0.80 7.74 -51.93 -0.40 0.40 16 34 H 0.38 7.72 7.93 -40.82 -0.32 7.40 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 0.84 7.46 -51.93 -0.39 0.45 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.41 6.74 -51.93 -0.35 0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16 43 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -32.98 353.33 -8.55 -41.53 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.92 Total: 2.98 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.81 Total: 3.80 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.21 Total: -54.27 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.98 -8.55 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.973 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds