Wall clock time and date at job start Mon Mar 30 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47144 * 2 1 4 4 C 1.52995 * 109.47436 * 120.00065 * 2 1 3 5 5 H 1.09009 * 113.01683 * 292.15834 * 4 2 1 6 6 C 1.53946 * 113.74606 * 160.49487 * 4 2 1 7 7 N 1.47576 * 86.24123 * 269.20457 * 6 4 2 8 8 C 1.34774 * 134.49575 * 155.41994 * 7 6 4 9 9 O 1.21576 * 120.00510 * 180.02562 * 8 7 6 10 10 N 1.34785 * 119.99466 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99550 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46748 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00490 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99764 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00451 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46767 * 60.00282 * 16 14 12 18 18 H 1.48496 * 109.46942 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46932 * 300.00365 * 16 14 12 20 20 C 1.47809 * 90.92532 * 335.45798 * 7 6 4 21 21 H 1.08998 * 113.83569 * 138.86984 * 20 7 6 22 22 C 1.52995 * 113.66795 * 270.23498 * 20 7 6 23 23 C 1.53002 * 109.47301 * 161.24223 * 22 20 7 24 24 C 1.53004 * 109.47065 * 281.24395 * 22 20 7 25 25 H 1.09000 * 109.46784 * 299.99738 * 1 2 3 26 26 H 1.08999 * 109.47100 * 59.99939 * 1 2 3 27 27 H 1.09004 * 109.46772 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47243 * 240.00172 * 2 1 3 29 29 H 1.08996 * 109.46989 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46800 * 300.00087 * 3 2 1 31 31 H 1.08996 * 109.46910 * 59.99968 * 3 2 1 32 32 H 1.08998 * 113.76699 * 23.56197 * 6 4 2 33 33 H 1.09001 * 113.77381 * 154.84395 * 6 4 2 34 34 H 0.96995 * 120.00053 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47137 * 299.99884 * 11 10 8 36 36 H 1.09000 * 109.47169 * 60.00308 * 11 10 8 37 37 H 0.96996 * 120.00863 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47333 * 41.24092 * 22 20 7 39 39 H 1.09002 * 109.46794 * 179.97438 * 23 22 20 40 40 H 1.09001 * 109.46865 * 299.99617 * 23 22 20 41 41 H 1.09002 * 109.47233 * 60.00186 * 23 22 20 42 42 H 1.08995 * 109.47005 * 65.26362 * 24 22 20 43 43 H 1.09007 * 109.46902 * 185.26281 * 24 22 20 44 44 H 1.08998 * 109.46710 * 305.26184 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.8254 -0.1805 2.1710 6 6 3.4990 -1.1995 1.1366 7 7 2.9427 -2.4611 0.6105 8 6 3.4147 -3.4435 -0.1824 9 8 2.7088 -4.3942 -0.4580 10 7 4.6693 -3.3718 -0.6698 11 6 5.1825 -4.4400 -1.5312 12 6 6.5984 -4.1213 -1.9370 13 1 7.0688 -3.2137 -1.5884 14 6 7.2933 -4.9884 -2.7532 15 7 6.7204 -6.0933 -3.1780 16 14 9.0483 -4.5930 -3.2568 17 1 9.8982 -4.4829 -2.0441 18 1 9.5685 -5.6758 -4.1298 19 1 9.0727 -3.3060 -3.9971 20 6 1.6606 -2.2122 1.3025 21 1 0.7827 -2.4636 0.7072 22 6 1.6066 -2.7846 2.7203 23 6 0.4838 -2.1015 3.5037 24 6 1.3391 -4.2895 2.6530 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 4.0890 -0.6423 0.4089 33 1 4.0013 -1.3079 2.0978 34 1 5.2323 -2.6132 -0.4502 35 1 5.1644 -5.3849 -0.9882 36 1 4.5584 -4.5204 -2.4212 37 1 7.2091 -6.7032 -3.7525 38 1 2.5587 -2.6068 3.2204 39 1 0.4452 -2.5096 4.5137 40 1 0.6745 -1.0294 3.5517 41 1 -0.4683 -2.2793 3.0037 42 1 2.1838 -4.7877 2.1772 43 1 1.2078 -4.6807 3.6619 44 1 0.4352 -4.4722 2.0719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458714295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:56 Heat of formation + Delta-G solvation = -48.244398 kcal Electronic energy + Delta-G solvation = -21493.622457 eV Core-core repulsion = 18445.233927 eV Total energy + Delta-G solvation = -3048.388530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88148 -39.60197 -36.17230 -35.91166 -34.96912 -34.18674 -30.42847 -28.71950 -28.27966 -27.72661 -26.39933 -24.73600 -23.70651 -21.75998 -20.93352 -20.05138 -19.07588 -18.04288 -17.34418 -16.91261 -16.60170 -15.73950 -15.66899 -15.19299 -14.95798 -14.91052 -14.59903 -14.27992 -14.04185 -13.77666 -13.66867 -13.21088 -12.99796 -12.93859 -12.90180 -12.81519 -12.69343 -12.45256 -12.24037 -12.16232 -11.93609 -11.78810 -11.65684 -11.52387 -11.45412 -11.11348 -10.93261 -10.80966 -10.02110 -9.32558 -8.30055 -6.47596 1.40936 1.46463 1.54174 1.65756 2.27755 2.37094 3.04318 3.14659 3.34518 3.64583 3.97626 4.02276 4.05872 4.21389 4.32908 4.46375 4.54150 4.60510 4.62035 4.70870 4.73424 4.81941 4.90609 4.91424 4.94386 5.01666 5.07897 5.10104 5.14674 5.20581 5.22500 5.28483 5.36267 5.40477 5.47852 5.49234 5.53147 5.59064 5.72402 5.83663 6.46834 6.64974 7.22626 7.24590 7.76420 8.82370 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.004547 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.355031 B = 6156.407098 C = 6862.846392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.088 4.088 5 H 0.132 0.868 6 C 0.099 3.901 7 N -0.663 5.663 8 C 0.710 3.290 9 O -0.651 6.651 10 N -0.724 5.724 11 C 0.289 3.711 12 C -0.556 4.556 13 H 0.082 0.918 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.989 3.011 17 H -0.261 1.261 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.155 3.845 21 H 0.066 0.934 22 C -0.093 4.093 23 C -0.134 4.134 24 C -0.140 4.140 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.400 0.600 35 H -0.019 1.019 36 H -0.019 1.019 37 H 0.269 0.731 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.014 0.986 43 H 0.072 0.928 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.148 18.162 14.281 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.196 4.196 4 C -0.106 4.106 5 H 0.150 0.850 6 C -0.023 4.023 7 N -0.402 5.402 8 C 0.413 3.587 9 O -0.535 6.535 10 N -0.377 5.377 11 C 0.166 3.834 12 C -0.594 4.594 13 H 0.100 0.900 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.811 3.189 17 H -0.186 1.186 18 H -0.209 1.209 19 H -0.186 1.186 20 C 0.051 3.949 21 H 0.084 0.916 22 C -0.112 4.112 23 C -0.192 4.192 24 C -0.198 4.198 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.234 0.766 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.091 0.909 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.535 17.144 13.811 24.406 hybrid contribution 1.043 -0.752 -0.847 1.540 sum -9.491 16.393 12.964 22.954 Atomic orbital electron populations 1.21797 0.94133 1.01293 1.02852 1.20872 0.96562 0.96753 0.95707 1.21767 1.01146 0.94018 1.02705 1.23028 0.93714 0.93086 1.00795 0.85026 1.23526 0.97716 0.81397 0.99659 1.49445 1.18849 1.22071 1.49824 1.15930 0.81891 0.81517 0.79396 1.90805 1.59721 1.35843 1.67091 1.45269 1.12635 1.26569 1.53252 1.18359 0.93364 0.84686 0.86990 1.21532 0.97653 1.08280 1.31900 0.90034 1.26103 1.04069 0.94178 0.95179 1.70143 1.39854 1.12324 1.34673 0.85157 0.77049 0.78143 0.78538 1.18561 1.20881 1.18580 1.22984 0.85911 0.93779 0.92186 0.91578 1.21312 1.01322 0.94664 0.93944 1.21752 0.96613 1.01306 0.99512 1.21721 1.00086 0.96536 1.01414 0.90184 0.92614 0.94109 0.94474 0.92584 0.92770 0.90459 0.89914 0.88028 0.76577 1.00096 1.00131 0.92172 0.90283 0.91310 0.90000 0.92535 0.96686 0.90898 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.03 71.98 0.65 -1.68 16 2 C -0.08 -1.48 2.58 -10.79 -0.03 -1.50 16 3 C -0.14 -1.88 9.16 71.99 0.66 -1.22 16 4 C -0.09 -1.50 2.74 -10.14 -0.03 -1.53 16 5 H 0.13 1.32 6.74 -2.38 -0.02 1.31 16 6 C 0.10 2.11 7.58 86.48 0.66 2.77 16 7 N -0.66 -21.91 3.28 -827.65 -2.72 -24.62 16 8 C 0.71 33.20 8.76 179.05 1.57 34.77 16 9 O -0.65 -37.08 17.06 -3.96 -0.07 -37.14 16 10 N -0.72 -34.65 5.55 -482.29 -2.68 -37.33 16 11 C 0.29 17.15 5.43 85.63 0.46 17.62 16 12 C -0.56 -31.74 9.28 25.60 0.24 -31.50 16 13 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 14 C 0.00 0.25 5.46 84.66 0.46 0.71 16 15 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 16 Si 0.99 43.37 29.54 68.60 2.03 45.40 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 C 0.15 3.91 3.11 45.05 0.14 4.05 16 21 H 0.07 1.95 6.67 -2.39 -0.02 1.93 16 22 C -0.09 -1.98 2.78 -10.79 -0.03 -2.01 16 23 C -0.13 -1.78 9.04 71.98 0.65 -1.13 16 24 C -0.14 -3.91 9.19 71.98 0.66 -3.25 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.04 0.79 6.69 -2.38 -0.02 0.77 16 28 H 0.04 0.97 8.01 -2.39 -0.02 0.95 16 29 H 0.06 0.77 7.88 -2.39 -0.02 0.75 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.70 7.84 -2.39 -0.02 1.69 16 33 H 0.10 1.75 7.74 -2.39 -0.02 1.73 16 34 H 0.40 16.26 7.93 -92.71 -0.74 15.52 16 35 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 36 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.08 1.61 7.46 -2.39 -0.02 1.60 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.71 6.74 -2.39 -0.02 0.70 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.01 0.53 8.12 -2.39 -0.02 0.51 16 43 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -78.72 353.33 3.14 -75.58 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.22 Total: 19.81 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.07 Total: 16.09 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -5.11 Total: -119.73 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.07 Total: -37.14 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -78.72 3.14 -75.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.333 kcal (2) G-P(sol) polarization free energy of solvation -78.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds