Wall clock time and date at job start Mon Mar 30 2020 00:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 C 1.53000 * 109.47090 * 119.99245 * 2 1 3 5 5 H 1.09001 * 113.04379 * 200.88751 * 4 2 1 6 6 C 1.53947 * 113.76947 * 69.13027 * 4 2 1 7 7 H 1.09004 * 113.83653 * 336.45571 * 6 4 2 8 8 C 1.53005 * 113.73905 * 107.74212 * 6 4 2 9 9 C 1.52994 * 109.47291 * 282.99546 * 8 6 4 10 10 C 1.53005 * 109.46785 * 162.99510 * 8 6 4 11 11 C 1.53940 * 86.29360 * 222.09485 * 6 4 2 12 12 N 1.47575 * 86.11573 * 23.60481 * 11 6 4 13 13 C 1.34788 * 134.48887 * 155.36277 * 12 11 6 14 14 O 1.21585 * 119.99500 * 183.65611 * 13 12 11 15 15 N 1.34770 * 119.99693 * 3.65287 * 13 12 11 16 16 C 1.46506 * 119.99719 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47231 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99880 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00059 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47017 * 90.00373 * 21 19 17 23 23 H 1.48500 * 109.46933 * 209.99958 * 21 19 17 24 24 H 1.48493 * 109.47394 * 329.99760 * 21 19 17 25 25 H 1.09004 * 109.47184 * 306.52486 * 1 2 3 26 26 H 1.08996 * 109.46848 * 66.52690 * 1 2 3 27 27 H 1.08997 * 109.46936 * 186.52229 * 1 2 3 28 28 H 1.08990 * 109.47379 * 239.99537 * 2 1 3 29 29 H 1.08994 * 109.47464 * 67.29643 * 3 2 1 30 30 H 1.08995 * 109.47003 * 187.30234 * 3 2 1 31 31 H 1.09000 * 109.46732 * 307.29525 * 3 2 1 32 32 H 1.08995 * 109.46789 * 43.00015 * 8 6 4 33 33 H 1.09001 * 109.46939 * 55.56076 * 9 8 6 34 34 H 1.09005 * 109.47146 * 175.54945 * 9 8 6 35 35 H 1.08997 * 109.47714 * 295.55448 * 9 8 6 36 36 H 1.08993 * 109.46834 * 180.02562 * 10 8 6 37 37 H 1.08996 * 109.47425 * 300.00519 * 10 8 6 38 38 H 1.09005 * 109.46956 * 60.00723 * 10 8 6 39 39 H 1.09000 * 113.77089 * 137.91380 * 11 6 4 40 40 H 1.09004 * 113.76437 * 269.19516 * 11 6 4 41 41 H 0.97000 * 120.00559 * 0.02562 * 15 13 12 42 42 H 1.09008 * 109.46776 * 299.99708 * 16 15 13 43 43 H 1.08994 * 109.47499 * 59.99565 * 16 15 13 44 44 H 0.97004 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.0658 -0.4563 1.5060 6 6 1.7737 -2.2373 1.2428 7 1 0.9440 -2.5361 0.6021 8 6 3.0302 -3.0825 1.0244 9 6 3.4153 -3.0508 -0.4559 10 6 2.7537 -4.5263 1.4487 11 6 1.3857 -2.0745 2.7236 12 7 1.1074 -0.6638 2.3917 13 6 0.3183 0.2929 2.9197 14 8 0.2387 1.3805 2.3820 15 7 -0.3824 0.0438 4.0437 16 6 -1.2405 1.0835 4.6174 17 6 -1.9068 0.5550 5.8614 18 1 -1.7110 -0.4545 6.1915 19 6 -2.7664 1.3602 6.5782 20 7 -3.0044 2.5896 6.1765 21 14 -3.5929 0.7047 8.1199 22 1 -2.7378 0.9911 9.2997 23 1 -4.9120 1.3644 8.2929 24 1 -3.7859 -0.7621 7.9927 25 1 -0.3634 0.6117 0.8259 26 1 -0.3633 0.4093 -0.9426 27 1 -0.3633 -1.0210 0.1167 28 1 1.8934 -0.5138 -0.8898 29 1 1.7872 1.9173 0.9480 30 1 3.1221 1.4454 -0.1306 31 1 1.5740 1.9926 -0.8176 32 1 3.8479 -2.6787 1.6214 33 1 3.5354 -2.0164 -0.7780 34 1 4.3536 -3.5870 -0.5989 35 1 2.6316 -3.5264 -1.0456 36 1 3.6490 -5.1283 1.2936 37 1 2.4793 -4.5490 2.5033 38 1 1.9360 -4.9302 0.8517 39 1 0.5001 -2.6414 3.0107 40 1 2.2190 -2.2092 3.4134 41 1 -0.3186 -0.8237 4.4728 42 1 -0.6360 1.9543 4.8714 43 1 -2.0011 1.3688 3.8906 44 1 -3.6094 3.1560 6.6806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458714296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:59 Heat of formation + Delta-G solvation = -16.749671 kcal Electronic energy + Delta-G solvation = -21630.444895 eV Core-core repulsion = 18583.422079 eV Total energy + Delta-G solvation = -3047.022816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70922 -37.92246 -35.07123 -34.23462 -33.70371 -32.13874 -28.85367 -27.52556 -26.78813 -26.64140 -25.45413 -23.05838 -22.04446 -20.40244 -19.93944 -18.78103 -17.39627 -16.08425 -15.82038 -15.50062 -14.98374 -14.66049 -14.39285 -14.08734 -13.56029 -13.44693 -13.15748 -12.93059 -12.63509 -12.45943 -12.33976 -12.18853 -11.94565 -11.89756 -11.52787 -11.32276 -11.15525 -10.95722 -10.91063 -10.82258 -10.81127 -10.61189 -10.36580 -10.18692 -9.98103 -9.34129 -9.05362 -8.67585 -8.28200 -7.64649 -6.13196 -4.19440 3.05946 3.25997 3.32205 3.34887 3.95065 4.27122 4.33458 4.61169 4.71182 4.85933 5.04596 5.13948 5.14803 5.22923 5.23826 5.34523 5.41784 5.47077 5.51626 5.59084 5.66953 5.68420 5.79183 5.83541 5.95137 6.01257 6.06366 6.09262 6.13552 6.26741 6.33140 6.39303 6.48837 6.76968 7.00264 7.30568 7.58792 7.60474 7.69506 7.98845 8.14007 8.80756 8.98068 9.39285 9.54474 10.97053 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.004496 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.646338 B = 6226.515523 C = 7112.057344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.151 4.151 4 C 0.166 3.834 5 H 0.082 0.918 6 C -0.114 4.114 7 H 0.101 0.899 8 C -0.087 4.087 9 C -0.147 4.147 10 C -0.146 4.146 11 C 0.105 3.895 12 N -0.661 5.661 13 C 0.718 3.282 14 O -0.585 6.585 15 N -0.728 5.728 16 C 0.268 3.732 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.100 0.900 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.392 -13.102 -11.388 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.106 4.106 3 C -0.209 4.209 4 C 0.062 3.938 5 H 0.100 0.900 6 C -0.133 4.133 7 H 0.119 0.881 8 C -0.106 4.106 9 C -0.204 4.204 10 C -0.204 4.204 11 C -0.019 4.019 12 N -0.403 5.403 13 C 0.421 3.579 14 O -0.465 6.465 15 N -0.379 5.379 16 C 0.147 3.853 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.119 0.881 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.216 0.784 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.027 -11.907 -11.597 20.517 hybrid contribution -0.440 -0.711 1.122 1.400 sum 11.587 -12.618 -10.475 20.080 Atomic orbital electron populations 1.22272 0.94395 1.01975 1.03651 1.21140 0.97201 0.96419 0.95831 1.21919 0.98911 0.96107 1.03912 1.22729 0.92447 0.92696 0.85961 0.90012 1.23373 0.98476 0.94604 0.96871 0.88081 1.21085 0.96778 0.95614 0.97115 1.21829 1.01039 1.01983 0.95575 1.21816 1.01460 0.95594 1.01503 1.23050 1.00233 0.82376 0.96245 1.49199 1.45871 1.11703 1.33482 1.15624 0.78826 0.82565 0.80866 1.90751 1.70029 1.22954 1.62804 1.45707 1.48321 1.18494 1.25387 1.18963 0.88223 0.85582 0.92501 1.21223 1.27479 0.99756 1.09470 0.92073 1.24935 0.96314 0.94742 0.97986 1.69979 1.35835 1.07068 1.39419 0.86424 0.78802 0.78962 0.82764 1.20499 1.21013 1.19796 0.88136 0.94142 0.93969 0.91340 0.90015 0.94027 0.93324 0.90948 0.92377 0.92863 0.92669 0.92822 0.92448 0.92635 0.90606 0.90535 0.78357 0.95815 0.95803 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 8.25 37.16 0.31 -2.32 16 2 C -0.09 -1.17 2.79 -90.61 -0.25 -1.42 16 3 C -0.15 -2.20 9.03 37.16 0.34 -1.87 16 4 C 0.17 2.13 3.41 -66.86 -0.23 1.91 16 5 H 0.08 1.01 8.00 -51.93 -0.42 0.59 16 6 C -0.11 -1.15 2.62 -89.69 -0.23 -1.38 16 7 H 0.10 1.06 7.01 -51.93 -0.36 0.70 16 8 C -0.09 -0.68 2.59 -90.62 -0.24 -0.92 16 9 C -0.15 -1.07 9.16 37.15 0.34 -0.73 16 10 C -0.15 -1.03 9.06 37.16 0.34 -0.69 16 11 C 0.10 1.22 7.35 -2.98 -0.02 1.20 16 12 N -0.66 -10.49 2.92 -176.57 -0.52 -11.00 16 13 C 0.72 15.11 7.59 -86.91 -0.66 14.45 16 14 O -0.59 -14.17 11.97 5.29 0.06 -14.11 16 15 N -0.73 -16.14 5.55 -66.41 -0.37 -16.51 16 16 C 0.27 7.29 5.43 -5.19 -0.03 7.26 16 17 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 21 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H 0.10 2.03 4.03 -51.93 -0.21 1.82 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.63 6.87 -51.93 -0.36 0.27 16 28 H 0.07 0.77 7.49 -51.93 -0.39 0.38 16 29 H 0.08 1.49 5.94 -51.93 -0.31 1.19 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.06 0.44 7.30 -51.93 -0.38 0.06 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.38 7.56 7.94 -40.82 -0.32 7.24 16 42 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -31.36 342.31 -8.45 -39.81 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.74 Total: 4.33 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.76 Total: 1.92 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.15 Total: -53.17 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.06 Total: -14.11 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.36 -8.45 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.056 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds