Wall clock time and date at job start Mon Mar 30 2020 00:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 C 1.53000 * 109.47090 * 119.99245 * 2 1 3 5 5 H 1.09001 * 113.04379 * 200.88751 * 4 2 1 6 6 C 1.53947 * 113.76947 * 69.13027 * 4 2 1 7 7 H 1.09004 * 113.83653 * 336.45571 * 6 4 2 8 8 C 1.53005 * 113.73905 * 107.74212 * 6 4 2 9 9 C 1.52994 * 109.47291 * 282.99546 * 8 6 4 10 10 C 1.53005 * 109.46785 * 162.99510 * 8 6 4 11 11 C 1.53940 * 86.29360 * 222.09485 * 6 4 2 12 12 N 1.47575 * 86.11573 * 23.60481 * 11 6 4 13 13 C 1.34788 * 134.48887 * 155.36277 * 12 11 6 14 14 O 1.21585 * 119.99500 * 183.65611 * 13 12 11 15 15 N 1.34770 * 119.99693 * 3.65287 * 13 12 11 16 16 C 1.46506 * 119.99719 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47231 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99880 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00059 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47017 * 90.00373 * 21 19 17 23 23 H 1.48500 * 109.46933 * 209.99958 * 21 19 17 24 24 H 1.48493 * 109.47394 * 329.99760 * 21 19 17 25 25 H 1.09004 * 109.47184 * 306.52486 * 1 2 3 26 26 H 1.08996 * 109.46848 * 66.52690 * 1 2 3 27 27 H 1.08997 * 109.46936 * 186.52229 * 1 2 3 28 28 H 1.08990 * 109.47379 * 239.99537 * 2 1 3 29 29 H 1.08994 * 109.47464 * 67.29643 * 3 2 1 30 30 H 1.08995 * 109.47003 * 187.30234 * 3 2 1 31 31 H 1.09000 * 109.46732 * 307.29525 * 3 2 1 32 32 H 1.08995 * 109.46789 * 43.00015 * 8 6 4 33 33 H 1.09001 * 109.46939 * 55.56076 * 9 8 6 34 34 H 1.09005 * 109.47146 * 175.54945 * 9 8 6 35 35 H 1.08997 * 109.47714 * 295.55448 * 9 8 6 36 36 H 1.08993 * 109.46834 * 180.02562 * 10 8 6 37 37 H 1.08996 * 109.47425 * 300.00519 * 10 8 6 38 38 H 1.09005 * 109.46956 * 60.00723 * 10 8 6 39 39 H 1.09000 * 113.77089 * 137.91380 * 11 6 4 40 40 H 1.09004 * 113.76437 * 269.19516 * 11 6 4 41 41 H 0.97000 * 120.00559 * 0.02562 * 15 13 12 42 42 H 1.09008 * 109.46776 * 299.99708 * 16 15 13 43 43 H 1.08994 * 109.47499 * 59.99565 * 16 15 13 44 44 H 0.97004 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.0658 -0.4563 1.5060 6 6 1.7737 -2.2373 1.2428 7 1 0.9440 -2.5361 0.6021 8 6 3.0302 -3.0825 1.0244 9 6 3.4153 -3.0508 -0.4559 10 6 2.7537 -4.5263 1.4487 11 6 1.3857 -2.0745 2.7236 12 7 1.1074 -0.6638 2.3917 13 6 0.3183 0.2929 2.9197 14 8 0.2387 1.3805 2.3820 15 7 -0.3824 0.0438 4.0437 16 6 -1.2405 1.0835 4.6174 17 6 -1.9068 0.5550 5.8614 18 1 -1.7110 -0.4545 6.1915 19 6 -2.7664 1.3602 6.5782 20 7 -3.0044 2.5896 6.1765 21 14 -3.5929 0.7047 8.1199 22 1 -2.7378 0.9911 9.2997 23 1 -4.9120 1.3644 8.2929 24 1 -3.7859 -0.7621 7.9927 25 1 -0.3634 0.6117 0.8259 26 1 -0.3633 0.4093 -0.9426 27 1 -0.3633 -1.0210 0.1167 28 1 1.8934 -0.5138 -0.8898 29 1 1.7872 1.9173 0.9480 30 1 3.1221 1.4454 -0.1306 31 1 1.5740 1.9926 -0.8176 32 1 3.8479 -2.6787 1.6214 33 1 3.5354 -2.0164 -0.7780 34 1 4.3536 -3.5870 -0.5989 35 1 2.6316 -3.5264 -1.0456 36 1 3.6490 -5.1283 1.2936 37 1 2.4793 -4.5490 2.5033 38 1 1.9360 -4.9302 0.8517 39 1 0.5001 -2.6414 3.0107 40 1 2.2190 -2.2092 3.4134 41 1 -0.3186 -0.8237 4.4728 42 1 -0.6360 1.9543 4.8714 43 1 -2.0011 1.3688 3.8906 44 1 -3.6094 3.1560 6.6806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458714296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:58 Heat of formation + Delta-G solvation = -36.548861 kcal Electronic energy + Delta-G solvation = -21631.303453 eV Core-core repulsion = 18583.422079 eV Total energy + Delta-G solvation = -3047.881374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.90903 -39.43649 -36.31532 -35.62863 -35.13249 -34.08246 -30.33743 -28.45507 -28.12891 -28.02886 -26.45446 -24.75892 -23.33793 -21.79029 -20.75589 -20.33151 -18.81331 -17.95401 -17.25982 -16.96267 -16.47256 -15.96064 -15.61006 -15.37466 -14.96175 -14.41924 -14.29157 -14.21447 -14.05821 -13.86013 -13.72645 -13.35969 -12.98359 -12.90791 -12.82913 -12.79301 -12.56777 -12.50511 -12.24385 -12.06401 -11.82307 -11.75410 -11.51045 -11.44182 -11.32748 -10.98399 -10.78723 -10.62102 -9.87451 -9.30315 -8.28892 -6.45521 1.41875 1.45140 1.55860 1.70781 2.34021 2.37986 3.05873 3.20813 3.42895 3.79300 3.99438 4.04964 4.15341 4.22438 4.27948 4.48921 4.57279 4.64046 4.69057 4.79054 4.82670 4.84400 4.86684 4.97797 5.05171 5.07786 5.16506 5.17483 5.18788 5.26042 5.27430 5.38340 5.40292 5.49258 5.51995 5.57914 5.62605 5.65578 5.82494 5.90618 6.51448 6.67865 7.24823 7.30559 7.84925 8.83497 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.004496 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.646338 B = 6226.515523 C = 7112.057344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.084 4.084 3 C -0.148 4.148 4 C 0.158 3.842 5 H 0.094 0.906 6 C -0.091 4.091 7 H 0.101 0.899 8 C -0.080 4.080 9 C -0.147 4.147 10 C -0.146 4.146 11 C 0.100 3.900 12 N -0.663 5.663 13 C 0.711 3.289 14 O -0.625 6.625 15 N -0.727 5.727 16 C 0.291 3.709 17 C -0.555 4.555 18 H 0.080 0.920 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.986 3.014 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.256 1.256 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.398 0.602 42 H -0.018 1.018 43 H -0.017 1.017 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.682 -16.299 -11.346 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.103 4.103 3 C -0.205 4.205 4 C 0.055 3.945 5 H 0.112 0.888 6 C -0.110 4.110 7 H 0.120 0.880 8 C -0.099 4.099 9 C -0.204 4.204 10 C -0.203 4.203 11 C -0.022 4.022 12 N -0.403 5.403 13 C 0.414 3.586 14 O -0.508 6.508 15 N -0.380 5.380 16 C 0.167 3.833 17 C -0.593 4.593 18 H 0.098 0.902 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.180 1.180 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.232 0.768 42 H 0.000 1.000 43 H 0.001 0.999 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.374 -15.182 -11.588 23.316 hybrid contribution -0.774 0.293 0.998 1.297 sum 12.600 -14.888 -10.589 22.193 Atomic orbital electron populations 1.22155 0.96375 1.01421 1.01973 1.21172 0.95368 0.96111 0.97608 1.21860 1.00603 0.96643 1.01438 1.23082 0.92154 0.94701 0.84523 0.88827 1.23212 0.99684 0.92653 0.95440 0.88039 1.21048 0.95335 0.95604 0.97882 1.21834 1.01697 1.02059 0.94859 1.21810 1.02024 0.94942 1.01511 1.23420 1.01302 0.79406 0.98036 1.49314 1.44764 1.12326 1.33859 1.15795 0.79321 0.83075 0.80370 1.90738 1.71203 1.25205 1.63646 1.45313 1.48443 1.18005 1.26249 1.18333 0.87159 0.85805 0.91969 1.21580 1.27615 1.00658 1.09431 0.90186 1.26063 0.96829 0.94768 1.01828 1.70148 1.36674 1.08817 1.41285 0.85142 0.77320 0.78968 0.77681 1.19541 1.20823 1.17964 0.92604 0.93623 0.93154 0.87957 0.94344 0.91485 0.93382 0.90432 0.92618 0.91781 0.92474 0.91813 0.92415 0.92572 0.89910 0.88494 0.76777 0.99971 0.99936 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 8.25 71.98 0.59 -4.56 16 2 C -0.08 -2.14 2.79 -10.79 -0.03 -2.17 16 3 C -0.15 -4.29 9.03 71.98 0.65 -3.64 16 4 C 0.16 3.80 3.41 45.09 0.15 3.95 16 5 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16 6 C -0.09 -1.57 2.62 -10.13 -0.03 -1.59 16 7 H 0.10 1.82 7.01 -2.39 -0.02 1.80 16 8 C -0.08 -0.95 2.59 -10.79 -0.03 -0.98 16 9 C -0.15 -1.58 9.16 71.98 0.66 -0.92 16 10 C -0.15 -1.52 9.06 71.98 0.65 -0.86 16 11 C 0.10 2.10 7.35 86.48 0.64 2.74 16 12 N -0.66 -20.75 2.92 -830.81 -2.43 -23.17 16 13 C 0.71 31.16 7.59 179.05 1.36 32.52 16 14 O -0.63 -32.41 11.97 -3.98 -0.05 -32.46 16 15 N -0.73 -33.46 5.55 -482.29 -2.68 -36.14 16 16 C 0.29 16.74 5.43 85.63 0.46 17.21 16 17 C -0.55 -31.23 9.28 25.60 0.24 -30.99 16 18 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.00 0.26 5.46 84.66 0.46 0.73 16 20 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 21 Si 0.99 43.11 29.54 68.60 2.03 45.14 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H 0.06 2.36 4.03 -2.39 -0.01 2.36 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.46 6.87 -2.39 -0.02 1.45 16 28 H 0.10 1.98 7.49 -2.39 -0.02 1.96 16 29 H 0.04 1.46 5.94 -2.39 -0.01 1.45 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 0.91 8.07 -2.39 -0.02 0.89 16 33 H 0.05 0.64 7.30 -2.39 -0.02 0.62 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 38 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 1.70 8.10 -2.38 -0.02 1.68 16 41 H 0.40 15.73 7.94 -92.71 -0.74 14.99 16 42 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 43 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 44 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.97 342.31 3.17 -69.80 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.23 Total: 22.50 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.78 Total: 11.41 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -4.82 Total: -116.38 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.05 Total: -32.46 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -72.97 3.17 -69.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.247 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds