Wall clock time and date at job start Mon Mar 30 2020 00:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47063 * 120.00221 * 2 1 3 5 5 H 1.09011 * 115.55597 * 274.31106 * 4 2 1 6 6 C 1.52993 * 117.50248 * 128.62527 * 4 2 1 7 7 C 1.52995 * 117.50160 * 59.99723 * 4 2 1 8 8 H 1.09006 * 117.51683 * 0.02562 * 7 4 2 9 9 N 1.46499 * 117.50081 * 214.98148 * 7 4 2 10 10 C 1.34777 * 119.99665 * 155.26653 * 9 7 4 11 11 O 1.21583 * 120.00270 * 359.72083 * 10 9 7 12 12 N 1.34775 * 119.99585 * 179.72218 * 10 9 7 13 13 C 1.46507 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46792 * 299.99939 * 14 13 12 16 16 C 1.53000 * 109.47308 * 60.00234 * 14 13 12 17 17 C 1.50702 * 109.46878 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99766 * 359.97438 * 17 14 13 19 19 C 1.37869 * 119.99946 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00192 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 120.00110 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47049 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47156 * 119.99884 * 21 19 17 24 24 H 1.48498 * 109.47200 * 239.99869 * 21 19 17 25 25 H 1.08987 * 109.47148 * 300.00075 * 1 2 3 26 26 H 1.08999 * 109.46515 * 60.00192 * 1 2 3 27 27 H 1.09000 * 109.46796 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47285 * 240.00135 * 2 1 3 29 29 H 1.08998 * 109.47017 * 300.00116 * 3 2 1 30 30 H 1.09003 * 109.46895 * 59.99896 * 3 2 1 31 31 H 1.08999 * 109.47421 * 179.97438 * 3 2 1 32 32 H 1.08993 * 117.50238 * 145.01688 * 6 4 2 33 33 H 1.09004 * 117.51781 * 359.97438 * 6 4 2 34 34 H 0.97001 * 119.99790 * 334.98366 * 9 7 4 35 35 H 0.97000 * 120.00523 * 0.02562 * 12 10 9 36 36 H 1.08998 * 109.47039 * 300.00042 * 13 12 10 37 37 H 1.08994 * 109.46660 * 60.00264 * 13 12 10 38 38 H 1.08994 * 109.47215 * 60.00531 * 15 14 13 39 39 H 1.09001 * 109.46679 * 180.02562 * 15 14 13 40 40 H 1.08994 * 109.47407 * 299.99965 * 15 14 13 41 41 H 1.08996 * 109.46830 * 59.99776 * 16 14 13 42 42 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.46595 * 299.99718 * 16 14 13 44 44 H 0.97004 * 120.00285 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8313 1.0514 7 6 1.6357 -2.1852 1.4343 8 1 1.0067 -2.6350 0.6660 9 7 1.3953 -2.6529 2.8016 10 6 0.5890 -3.7106 3.0200 11 8 0.0572 -4.2734 2.0826 12 7 0.3722 -4.1444 4.2775 13 6 -0.5047 -5.2938 4.5149 14 6 -0.5799 -5.5762 6.0168 15 6 0.8212 -5.8851 6.5483 16 6 -1.1403 -4.3494 6.7390 17 6 -1.4814 -6.7589 6.2610 18 1 -1.9538 -7.2588 5.4283 19 6 -1.7030 -7.2027 7.5473 20 7 -1.1274 -6.5943 8.5613 21 14 -2.8211 -8.6683 7.8501 22 1 -3.3407 -9.1707 6.5530 23 1 -2.0536 -9.7451 8.5259 24 1 -3.9572 -8.2544 8.7122 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 3.8415 -1.9465 1.8168 33 1 3.3912 -2.0483 0.0313 34 1 1.8196 -2.2039 3.5495 35 1 0.7961 -3.6952 5.0254 36 1 -1.5029 -5.0735 4.1366 37 1 -0.1056 -6.1676 4.0001 38 1 1.4736 -5.0300 6.3717 39 1 0.7676 -6.0868 7.6182 40 1 1.2205 -6.7591 6.0338 41 1 -2.1384 -4.1293 6.3603 42 1 -1.1934 -4.5505 7.8090 43 1 -0.4879 -3.4942 6.5623 44 1 -1.2836 -6.9063 9.4664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459243553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:08 Heat of formation + Delta-G solvation = -29.391146 kcal Electronic energy + Delta-G solvation = -20748.415198 eV Core-core repulsion = 17700.844206 eV Total energy + Delta-G solvation = -3047.570992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81580 -38.27231 -36.34195 -34.31997 -33.26588 -31.89589 -30.50988 -27.34444 -25.71010 -25.60150 -24.87023 -23.13970 -22.07153 -20.61599 -19.99269 -18.77096 -18.02867 -16.45273 -15.81058 -15.14288 -14.95284 -14.75092 -14.54440 -14.17685 -13.57228 -13.30284 -13.01715 -12.90008 -12.76124 -12.59617 -12.39116 -12.16353 -11.50759 -11.45522 -11.30842 -11.19230 -11.00616 -10.89832 -10.82424 -10.64723 -10.36592 -10.19832 -10.14727 -9.77578 -9.61668 -9.29471 -8.76812 -8.70631 -8.39740 -8.14243 -6.01113 -4.10901 3.00051 3.28160 3.36767 3.41985 3.43206 3.91904 4.38540 4.47897 4.64317 4.68082 4.80963 4.92227 5.09444 5.21007 5.25834 5.39459 5.47049 5.62346 5.67631 5.71329 5.84004 5.86247 5.97193 6.15148 6.19597 6.23895 6.38353 6.52416 6.69748 6.81599 6.84236 6.92730 7.04780 7.10655 7.31913 7.43033 7.57391 7.71290 8.02610 8.13973 8.39468 8.48938 8.89340 9.04881 9.54947 11.00384 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.003242 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.918937 B = 8633.321058 C = 8723.418550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.159 4.159 5 H 0.104 0.896 6 C -0.195 4.195 7 C 0.114 3.886 8 H 0.136 0.864 9 N -0.725 5.725 10 C 0.701 3.299 11 O -0.598 6.598 12 N -0.732 5.732 13 C 0.150 3.850 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.394 0.606 35 H 0.393 0.607 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.005 0.995 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 13.767 -11.307 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.201 4.201 4 C -0.179 4.179 5 H 0.122 0.878 6 C -0.234 4.234 7 C 0.007 3.993 8 H 0.154 0.846 9 N -0.378 5.378 10 C 0.401 3.599 11 O -0.477 6.477 12 N -0.386 5.386 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.228 0.772 35 H 0.228 0.772 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.103 0.897 43 H 0.024 0.976 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.211 13.165 -11.932 19.176 hybrid contribution -0.067 -0.313 1.017 1.066 sum 7.144 12.852 -10.916 18.313 Atomic orbital electron populations 1.21831 0.94760 1.02383 1.01535 1.20682 0.95864 0.95791 0.95898 1.21803 1.00940 0.95632 1.01692 1.22922 1.03540 0.91374 1.00026 0.87758 1.23628 0.93665 1.03077 1.03013 1.21405 0.97119 0.95225 0.85550 0.84613 1.44519 1.52061 1.33857 1.07363 1.16015 0.79539 0.80095 0.84264 1.90871 1.54882 1.59723 1.42221 1.45509 1.52215 1.35508 1.05399 1.21594 0.91491 0.84895 0.99276 1.18369 0.94072 0.94667 0.87385 1.21822 0.95713 0.96733 1.04514 1.21818 0.97331 0.95031 1.04565 1.21035 1.27621 1.13002 0.92625 0.92332 1.24880 0.95802 0.96789 0.96088 1.69816 1.43490 1.40463 0.98763 0.86516 0.80504 0.82589 0.78286 1.19729 1.21086 1.21077 0.92625 0.92839 0.92177 0.91066 0.92719 0.92689 0.92674 0.88712 0.88248 0.77241 0.77200 0.92931 0.92922 0.97577 0.89636 0.95440 0.95439 0.89657 0.97576 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.03 37.16 0.34 -1.01 16 2 C -0.06 -0.53 3.07 -90.62 -0.28 -0.81 16 3 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16 4 C -0.16 -1.46 5.07 -90.63 -0.46 -1.92 16 5 H 0.10 0.92 8.11 -51.92 -0.42 0.49 16 6 C -0.19 -1.84 10.10 -26.73 -0.27 -2.11 16 7 C 0.11 1.38 5.64 -67.93 -0.38 0.99 16 8 H 0.14 1.89 6.87 -51.93 -0.36 1.54 16 9 N -0.72 -9.79 5.57 -58.68 -0.33 -10.12 16 10 C 0.70 12.72 8.57 -86.92 -0.74 11.98 16 11 O -0.60 -13.18 15.91 5.29 0.08 -13.09 16 12 N -0.73 -13.34 4.96 -65.22 -0.32 -13.67 16 13 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.50 -13.30 8.01 -34.44 -0.28 -13.57 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 21 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.05 0.52 8.14 -51.94 -0.42 0.10 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.63 7.29 -51.93 -0.38 0.26 16 28 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 34 H 0.39 4.28 8.84 -40.82 -0.36 3.92 16 35 H 0.39 6.40 6.18 -40.82 -0.25 6.15 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 39 H 0.08 2.14 6.07 -51.93 -0.31 1.82 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -28.96 348.20 -8.85 -37.81 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.71 Total: 7.49 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.32 Total: -6.30 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.13 Total: -46.95 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.96 -8.85 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459243553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.421 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds