Wall clock time and date at job start Mon Mar 30 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47063 * 120.00221 * 2 1 3 5 5 H 1.09011 * 115.55597 * 274.31106 * 4 2 1 6 6 C 1.52993 * 117.50248 * 128.62527 * 4 2 1 7 7 C 1.52995 * 117.50160 * 59.99723 * 4 2 1 8 8 H 1.09006 * 117.51683 * 0.02562 * 7 4 2 9 9 N 1.46499 * 117.50081 * 214.98148 * 7 4 2 10 10 C 1.34777 * 119.99665 * 155.26653 * 9 7 4 11 11 O 1.21583 * 120.00270 * 359.72083 * 10 9 7 12 12 N 1.34775 * 119.99585 * 179.72218 * 10 9 7 13 13 C 1.46507 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46792 * 299.99939 * 14 13 12 16 16 C 1.53000 * 109.47308 * 60.00234 * 14 13 12 17 17 C 1.50702 * 109.46878 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99766 * 359.97438 * 17 14 13 19 19 C 1.37869 * 119.99946 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00192 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 120.00110 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47049 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47156 * 119.99884 * 21 19 17 24 24 H 1.48498 * 109.47200 * 239.99869 * 21 19 17 25 25 H 1.08987 * 109.47148 * 300.00075 * 1 2 3 26 26 H 1.08999 * 109.46515 * 60.00192 * 1 2 3 27 27 H 1.09000 * 109.46796 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47285 * 240.00135 * 2 1 3 29 29 H 1.08998 * 109.47017 * 300.00116 * 3 2 1 30 30 H 1.09003 * 109.46895 * 59.99896 * 3 2 1 31 31 H 1.08999 * 109.47421 * 179.97438 * 3 2 1 32 32 H 1.08993 * 117.50238 * 145.01688 * 6 4 2 33 33 H 1.09004 * 117.51781 * 359.97438 * 6 4 2 34 34 H 0.97001 * 119.99790 * 334.98366 * 9 7 4 35 35 H 0.97000 * 120.00523 * 0.02562 * 12 10 9 36 36 H 1.08998 * 109.47039 * 300.00042 * 13 12 10 37 37 H 1.08994 * 109.46660 * 60.00264 * 13 12 10 38 38 H 1.08994 * 109.47215 * 60.00531 * 15 14 13 39 39 H 1.09001 * 109.46679 * 180.02562 * 15 14 13 40 40 H 1.08994 * 109.47407 * 299.99965 * 15 14 13 41 41 H 1.08996 * 109.46830 * 59.99776 * 16 14 13 42 42 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.46595 * 299.99718 * 16 14 13 44 44 H 0.97004 * 120.00285 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8313 1.0514 7 6 1.6357 -2.1852 1.4343 8 1 1.0067 -2.6350 0.6660 9 7 1.3953 -2.6529 2.8016 10 6 0.5890 -3.7106 3.0200 11 8 0.0572 -4.2734 2.0826 12 7 0.3722 -4.1444 4.2775 13 6 -0.5047 -5.2938 4.5149 14 6 -0.5799 -5.5762 6.0168 15 6 0.8212 -5.8851 6.5483 16 6 -1.1403 -4.3494 6.7390 17 6 -1.4814 -6.7589 6.2610 18 1 -1.9538 -7.2588 5.4283 19 6 -1.7030 -7.2027 7.5473 20 7 -1.1274 -6.5943 8.5613 21 14 -2.8211 -8.6683 7.8501 22 1 -3.3407 -9.1707 6.5530 23 1 -2.0536 -9.7451 8.5259 24 1 -3.9572 -8.2544 8.7122 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 3.8415 -1.9465 1.8168 33 1 3.3912 -2.0483 0.0313 34 1 1.8196 -2.2039 3.5495 35 1 0.7961 -3.6952 5.0254 36 1 -1.5029 -5.0735 4.1366 37 1 -0.1056 -6.1676 4.0001 38 1 1.4736 -5.0300 6.3717 39 1 0.7676 -6.0868 7.6182 40 1 1.2205 -6.7591 6.0338 41 1 -2.1384 -4.1293 6.3603 42 1 -1.1934 -4.5505 7.8090 43 1 -0.4879 -3.4942 6.5623 44 1 -1.2836 -6.9063 9.4664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459243553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:07 Heat of formation + Delta-G solvation = -46.373962 kcal Electronic energy + Delta-G solvation = -20749.151628 eV Core-core repulsion = 17700.844206 eV Total energy + Delta-G solvation = -3048.307422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14636 -39.31681 -38.05617 -35.31997 -34.96370 -33.20717 -32.12102 -27.98896 -27.55674 -27.45744 -26.68288 -23.89269 -23.16975 -21.87989 -20.83887 -20.58337 -19.41584 -17.78078 -17.56185 -16.64857 -16.43756 -15.97143 -15.82090 -15.23733 -14.95972 -14.70923 -14.67898 -14.00822 -13.96106 -13.68840 -13.43010 -13.21444 -13.10281 -13.01067 -12.71080 -12.56587 -12.30108 -12.18970 -12.13649 -12.12049 -11.81542 -11.58466 -11.47831 -11.37555 -11.16777 -10.90780 -10.69273 -10.39989 -10.08963 -9.43700 -8.02132 -6.17648 1.41729 1.45776 1.55218 1.74040 2.12263 2.46591 2.97789 3.21577 3.33377 3.77845 3.82945 4.03814 4.17256 4.40352 4.43826 4.48023 4.53925 4.69028 4.71401 4.83257 4.85669 4.95838 5.00116 5.03672 5.06590 5.09349 5.11726 5.20779 5.23712 5.30298 5.38841 5.45491 5.52503 5.61362 5.64819 5.67904 5.68075 6.07949 6.15867 6.22558 6.44352 6.86803 7.15792 7.50173 7.63385 8.97061 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.003242 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.918937 B = 8633.321058 C = 8723.418550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.137 4.137 5 H 0.116 0.884 6 C -0.177 4.177 7 C 0.079 3.921 8 H 0.110 0.890 9 N -0.705 5.705 10 C 0.699 3.301 11 O -0.641 6.641 12 N -0.725 5.725 13 C 0.168 3.832 14 C 0.053 3.947 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.528 4.528 18 H 0.044 0.956 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.945 3.055 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.410 0.590 35 H 0.405 0.595 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 15.446 -11.520 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.157 4.157 5 H 0.134 0.866 6 C -0.215 4.215 7 C -0.028 4.028 8 H 0.128 0.872 9 N -0.359 5.359 10 C 0.399 3.601 11 O -0.524 6.524 12 N -0.380 5.380 13 C 0.043 3.957 14 C 0.052 3.948 15 C -0.178 4.178 16 C -0.177 4.177 17 C -0.567 4.567 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.772 3.228 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.247 0.753 35 H 0.242 0.758 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.648 14.899 -12.134 21.072 hybrid contribution -0.482 -0.789 1.025 1.380 sum 8.166 14.111 -11.109 19.728 Atomic orbital electron populations 1.21817 0.95579 1.01071 1.01970 1.20728 0.95140 0.96826 0.95627 1.21769 1.01389 0.94374 1.02146 1.22982 1.01985 0.89947 1.00752 0.86594 1.23697 0.92241 1.01708 1.03876 1.21477 0.99288 0.97852 0.84134 0.87165 1.44298 1.50591 1.32214 1.08778 1.16140 0.79791 0.80769 0.83417 1.90844 1.56706 1.61378 1.43428 1.45187 1.51940 1.34785 1.06103 1.21125 0.91139 0.85513 0.97875 1.18355 0.94030 0.94096 0.88334 1.21665 0.95782 0.97669 1.02669 1.21660 0.97536 0.95803 1.02737 1.21308 1.28551 1.14343 0.92494 0.93769 1.25444 0.96918 0.98800 0.95974 1.69912 1.43912 1.41128 0.98859 0.85702 0.79089 0.80143 0.77847 1.20048 1.20690 1.20680 0.92933 0.91710 0.94325 0.90731 0.92008 0.92582 0.91898 0.87566 0.87238 0.75328 0.75783 0.94730 0.94699 0.94450 0.91842 0.96354 0.96373 0.91862 0.94463 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.03 71.98 0.65 -1.89 16 2 C -0.06 -0.94 3.07 -10.79 -0.03 -0.97 16 3 C -0.14 -1.57 9.18 71.98 0.66 -0.91 16 4 C -0.14 -2.18 5.07 -10.80 -0.05 -2.24 16 5 H 0.12 1.64 8.11 -2.38 -0.02 1.62 16 6 C -0.18 -2.86 10.10 30.59 0.31 -2.55 16 7 C 0.08 1.81 5.64 44.99 0.25 2.07 16 8 H 0.11 3.15 6.87 -2.38 -0.02 3.13 16 9 N -0.70 -18.02 5.57 -457.82 -2.55 -20.57 16 10 C 0.70 25.07 8.57 179.05 1.53 26.60 16 11 O -0.64 -28.82 15.91 -3.98 -0.06 -28.89 16 12 N -0.72 -25.77 4.96 -478.53 -2.37 -28.14 16 13 C 0.17 7.36 4.50 86.38 0.39 7.75 16 14 C 0.05 2.45 0.50 -52.92 -0.03 2.43 16 15 C -0.12 -5.36 8.08 71.98 0.58 -4.77 16 16 C -0.12 -5.34 8.08 71.98 0.58 -4.75 16 17 C -0.53 -28.26 8.01 25.60 0.21 -28.05 16 18 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 19 C 0.03 1.50 5.15 84.65 0.44 1.94 16 20 N -0.90 -48.03 9.35 21.44 0.20 -47.83 16 21 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 0.82 7.29 -2.39 -0.02 0.81 16 28 H 0.07 1.05 7.90 -2.39 -0.02 1.04 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 1.58 8.05 -2.39 -0.02 1.56 16 34 H 0.41 7.82 8.84 -92.71 -0.82 7.00 16 35 H 0.41 12.29 6.18 -92.71 -0.57 11.72 16 36 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 39 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 43 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 44 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -62.89 348.20 2.31 -60.58 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.41 Total: 25.32 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.49 Total: -5.37 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.72 Total: -96.55 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.06 Total: -28.89 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -62.89 2.31 -60.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459243553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.205 kcal (2) G-P(sol) polarization free energy of solvation -62.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds