Wall clock time and date at job start Mon Mar 30 2020 01:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00261 * 2 1 4 4 O 1.21585 * 119.99975 * 179.97438 * 3 2 1 5 5 N 1.34771 * 119.99862 * 359.97438 * 3 2 1 6 6 C 1.46495 * 120.00195 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47522 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46922 * 299.99681 * 7 6 5 9 9 C 1.52998 * 109.47193 * 59.99455 * 7 6 5 10 10 C 1.50698 * 109.47190 * 180.02562 * 7 6 5 11 11 H 1.07996 * 120.00096 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99935 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00284 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99972 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.46961 * 60.00206 * 14 12 10 16 16 H 1.48507 * 109.47030 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47510 * 299.99948 * 14 12 10 18 18 C 1.46500 * 119.99716 * 179.97438 * 2 1 3 19 19 C 1.54961 * 110.92632 * 306.54194 * 18 2 1 20 20 C 1.54270 * 104.16191 * 156.29508 * 19 18 2 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47349 * 270.00323 * 1 2 3 24 24 H 1.09003 * 109.47237 * 29.99893 * 1 2 3 25 25 H 1.09000 * 109.47693 * 150.00009 * 1 2 3 26 26 H 0.97004 * 120.00466 * 0.02562 * 5 3 2 27 27 H 1.09007 * 109.47143 * 299.99845 * 6 5 3 28 28 H 1.09002 * 109.47311 * 59.99969 * 6 5 3 29 29 H 1.09007 * 109.46938 * 60.00208 * 8 7 6 30 30 H 1.09000 * 109.47175 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.47384 * 300.00147 * 8 7 6 32 32 H 1.09007 * 109.46981 * 60.00728 * 9 7 6 33 33 H 1.09000 * 109.47082 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47322 * 300.00389 * 9 7 6 35 35 H 0.96999 * 120.00525 * 179.97438 * 13 12 10 36 36 H 1.09001 * 110.67461 * 183.23307 * 18 2 1 37 37 H 1.08997 * 110.47708 * 37.64106 * 19 18 2 38 38 H 1.09002 * 110.53308 * 274.97498 * 19 18 2 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3343 -0.0005 6 6 2.1975 3.6030 -0.0011 7 6 1.2034 4.7660 -0.0010 8 6 0.3233 4.6847 -1.2499 9 6 0.3241 4.6852 1.2485 10 6 1.9569 6.0711 -0.0022 11 1 3.0369 6.0710 -0.0026 12 6 1.2676 7.2651 -0.0028 13 7 -0.0476 7.2652 -0.0029 14 14 2.2016 8.8828 -0.0036 15 1 3.0554 8.9608 -1.2161 16 1 1.2366 10.0116 -0.0049 17 1 3.0553 8.9622 1.2088 18 6 2.1974 -1.2688 0.0006 19 6 1.7278 -2.1784 1.1638 20 6 2.0868 -3.6042 0.6967 21 6 2.1615 -3.5587 -0.8395 22 6 1.8447 -2.1068 -1.2535 23 1 -0.3634 0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.4950 2.3344 -0.0005 27 1 2.8242 3.6612 0.8889 28 1 2.8242 3.6604 -0.8911 29 1 -0.2218 3.7407 -1.2495 30 1 -0.3853 5.5130 -1.2496 31 1 0.9496 4.7422 -2.1401 32 1 0.9511 4.7432 2.1384 33 1 -0.3844 5.5135 1.2484 34 1 -0.2209 3.7413 1.2489 35 1 -0.5326 8.1053 -0.0030 36 1 3.2716 -1.0930 0.0580 37 1 0.6518 -2.0847 1.3107 38 1 2.2618 -1.9319 2.0815 39 1 1.3148 -4.3060 1.0123 40 1 3.0513 -3.9003 1.1088 41 1 3.1627 -3.8320 -1.1729 42 1 1.4265 -4.2391 -1.2695 43 1 2.4640 -1.8073 -2.0989 44 1 0.7875 -2.0017 -1.4975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:44 Heat of formation + Delta-G solvation = -42.886110 kcal Electronic energy + Delta-G solvation = -21451.320078 eV Core-core repulsion = 18403.163900 eV Total energy + Delta-G solvation = -3048.156177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05909 -38.00817 -36.27162 -34.49895 -33.09362 -30.76002 -28.84514 -28.13927 -26.63451 -25.70184 -25.46509 -24.52232 -20.98083 -20.43327 -19.19979 -18.85413 -17.93093 -16.45188 -15.79098 -15.62006 -15.24519 -14.69280 -14.56168 -13.72905 -13.60719 -13.45377 -13.28533 -12.84897 -12.52490 -12.40300 -12.23800 -12.00758 -11.52120 -11.40785 -11.31121 -11.26238 -11.16518 -10.82230 -10.71675 -10.65597 -10.58114 -10.35541 -10.18111 -9.67670 -9.60376 -9.27185 -8.77412 -8.59623 -8.37428 -8.08137 -5.99857 -4.09724 2.98920 3.32013 3.35942 3.40141 3.63170 4.34072 4.44797 4.52902 4.58935 4.72992 5.08197 5.26503 5.26821 5.28414 5.34694 5.39415 5.45359 5.56089 5.65341 5.75518 5.76371 5.89674 6.05737 6.12294 6.19520 6.26478 6.40194 6.53293 6.69856 6.84244 6.84710 6.96506 7.05884 7.14197 7.31643 7.42563 7.58300 7.71876 8.03416 8.14745 8.40365 8.47384 8.89939 9.07927 9.55851 11.01594 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046713 B = 0.003742 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.263441 B = 7480.440856 C = 7659.956845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.631 5.631 3 C 0.700 3.300 4 O -0.599 6.599 5 N -0.732 5.732 6 C 0.149 3.851 7 C 0.056 3.944 8 C -0.129 4.129 9 C -0.129 4.129 10 C -0.505 4.505 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.154 3.846 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.137 4.137 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.394 0.606 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.004 0.996 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.004 0.996 35 H 0.260 0.740 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -18.388 -0.117 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.368 5.368 3 C 0.401 3.599 4 O -0.479 6.479 5 N -0.388 5.388 6 C 0.026 3.974 7 C 0.055 3.945 8 C -0.187 4.187 9 C -0.187 4.187 10 C -0.544 4.544 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.050 3.950 19 C -0.174 4.174 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.176 4.176 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.230 0.770 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.438 -18.185 -0.117 18.242 hybrid contribution -0.126 0.879 -0.002 0.888 sum -1.564 -17.306 -0.118 17.377 Atomic orbital electron populations 1.21652 0.80538 1.02787 1.01525 1.46944 1.05903 1.04782 1.79182 1.16020 0.85405 0.80523 0.77969 1.90857 1.11752 1.86320 1.58927 1.45651 1.10085 1.05082 1.77958 1.21586 0.95013 0.80514 1.00310 1.18358 0.91957 0.91372 0.92787 1.21815 1.00225 0.98983 0.97635 1.21811 1.00219 0.99007 0.97620 1.20956 0.92882 0.89739 1.50827 0.92450 1.24875 0.94875 0.98933 0.94809 1.69794 1.05774 1.26355 1.50631 0.86628 0.79569 0.82933 0.78692 1.20282 1.21362 1.20274 1.21894 0.97967 0.81401 0.93779 1.22719 1.01602 0.94499 0.98576 1.22058 1.01612 0.96652 0.95659 1.22056 1.01710 0.96470 0.95737 1.22737 1.01861 0.94645 0.98338 0.92887 0.91343 0.91029 0.76966 0.92989 0.93000 0.97715 0.89631 0.95451 0.95455 0.89658 0.97654 0.92985 0.87506 0.91232 0.91313 0.91793 0.91684 0.91678 0.91805 0.91290 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 8.87 59.85 0.53 1.39 16 2 N -0.63 -9.07 2.89 -177.33 -0.51 -9.58 16 3 C 0.70 13.22 8.28 -86.92 -0.72 12.50 16 4 O -0.60 -13.53 15.72 5.29 0.08 -13.45 16 5 N -0.73 -13.85 4.82 -65.23 -0.31 -14.16 16 6 C 0.15 3.29 4.50 -4.04 -0.02 3.28 16 7 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 8 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 9 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 10 C -0.51 -13.41 8.01 -34.44 -0.28 -13.68 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 13 N -0.89 -23.74 9.35 55.43 0.52 -23.22 16 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.15 1.94 3.29 -65.89 -0.22 1.72 16 19 C -0.14 -1.36 6.38 -25.03 -0.16 -1.52 16 20 C -0.12 -0.99 6.80 -25.61 -0.17 -1.17 16 21 C -0.12 -1.00 6.80 -25.62 -0.17 -1.18 16 22 C -0.14 -1.40 6.39 -25.07 -0.16 -1.56 16 23 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 24 H 0.07 0.77 6.36 -51.93 -0.33 0.43 16 25 H 0.07 0.62 6.38 -51.93 -0.33 0.29 16 26 H 0.39 6.73 3.89 -40.82 -0.16 6.57 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.00 0.08 6.86 -51.92 -0.36 -0.28 16 30 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 34 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.11 1.60 7.00 -51.93 -0.36 1.24 16 37 H 0.07 0.65 7.08 -51.93 -0.37 0.29 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -29.22 333.28 -8.58 -37.79 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.41 Total: 4.34 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.94 Total: -2.60 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.31 Total: -46.96 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.22 -8.58 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.093 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds