Wall clock time and date at job start Mon Mar 30 2020 01:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00261 * 2 1 4 4 O 1.21585 * 119.99975 * 179.97438 * 3 2 1 5 5 N 1.34771 * 119.99862 * 359.97438 * 3 2 1 6 6 C 1.46495 * 120.00195 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47522 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46922 * 299.99681 * 7 6 5 9 9 C 1.52998 * 109.47193 * 59.99455 * 7 6 5 10 10 C 1.50698 * 109.47190 * 180.02562 * 7 6 5 11 11 H 1.07996 * 120.00096 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99935 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00284 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99972 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.46961 * 60.00206 * 14 12 10 16 16 H 1.48507 * 109.47030 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47510 * 299.99948 * 14 12 10 18 18 C 1.46500 * 119.99716 * 179.97438 * 2 1 3 19 19 C 1.54961 * 110.92632 * 306.54194 * 18 2 1 20 20 C 1.54270 * 104.16191 * 156.29508 * 19 18 2 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47349 * 270.00323 * 1 2 3 24 24 H 1.09003 * 109.47237 * 29.99893 * 1 2 3 25 25 H 1.09000 * 109.47693 * 150.00009 * 1 2 3 26 26 H 0.97004 * 120.00466 * 0.02562 * 5 3 2 27 27 H 1.09007 * 109.47143 * 299.99845 * 6 5 3 28 28 H 1.09002 * 109.47311 * 59.99969 * 6 5 3 29 29 H 1.09007 * 109.46938 * 60.00208 * 8 7 6 30 30 H 1.09000 * 109.47175 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.47384 * 300.00147 * 8 7 6 32 32 H 1.09007 * 109.46981 * 60.00728 * 9 7 6 33 33 H 1.09000 * 109.47082 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47322 * 300.00389 * 9 7 6 35 35 H 0.96999 * 120.00525 * 179.97438 * 13 12 10 36 36 H 1.09001 * 110.67461 * 183.23307 * 18 2 1 37 37 H 1.08997 * 110.47708 * 37.64106 * 19 18 2 38 38 H 1.09002 * 110.53308 * 274.97498 * 19 18 2 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3343 -0.0005 6 6 2.1975 3.6030 -0.0011 7 6 1.2034 4.7660 -0.0010 8 6 0.3233 4.6847 -1.2499 9 6 0.3241 4.6852 1.2485 10 6 1.9569 6.0711 -0.0022 11 1 3.0369 6.0710 -0.0026 12 6 1.2676 7.2651 -0.0028 13 7 -0.0476 7.2652 -0.0029 14 14 2.2016 8.8828 -0.0036 15 1 3.0554 8.9608 -1.2161 16 1 1.2366 10.0116 -0.0049 17 1 3.0553 8.9622 1.2088 18 6 2.1974 -1.2688 0.0006 19 6 1.7278 -2.1784 1.1638 20 6 2.0868 -3.6042 0.6967 21 6 2.1615 -3.5587 -0.8395 22 6 1.8447 -2.1068 -1.2535 23 1 -0.3634 0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.4950 2.3344 -0.0005 27 1 2.8242 3.6612 0.8889 28 1 2.8242 3.6604 -0.8911 29 1 -0.2218 3.7407 -1.2495 30 1 -0.3853 5.5130 -1.2496 31 1 0.9496 4.7422 -2.1401 32 1 0.9511 4.7432 2.1384 33 1 -0.3844 5.5135 1.2484 34 1 -0.2209 3.7413 1.2489 35 1 -0.5326 8.1053 -0.0030 36 1 3.2716 -1.0930 0.0580 37 1 0.6518 -2.0847 1.3107 38 1 2.2618 -1.9319 2.0815 39 1 1.3148 -4.3060 1.0123 40 1 3.0513 -3.9003 1.1088 41 1 3.1627 -3.8320 -1.1729 42 1 1.4265 -4.2391 -1.2695 43 1 2.4640 -1.8073 -2.0989 44 1 0.7875 -2.0017 -1.4975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459252461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:43 Heat of formation + Delta-G solvation = -59.022799 kcal Electronic energy + Delta-G solvation = -21452.019817 eV Core-core repulsion = 18403.163900 eV Total energy + Delta-G solvation = -3048.855917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39703 -39.15352 -37.98198 -35.74117 -34.79219 -32.59608 -29.60325 -29.07972 -27.81480 -27.56976 -27.35816 -26.19688 -22.23516 -21.12548 -20.63758 -20.39809 -19.32504 -17.86870 -17.51465 -16.71494 -16.64316 -16.36216 -15.85679 -15.19836 -14.96132 -14.75286 -14.38356 -14.19317 -14.06125 -13.93195 -13.21013 -13.17088 -13.13967 -13.05534 -12.68663 -12.61286 -12.35036 -12.24117 -12.12665 -12.10521 -11.98592 -11.56141 -11.48983 -11.31468 -11.22892 -11.09843 -10.71680 -10.39570 -10.08698 -9.39727 -8.01930 -6.17666 1.44934 1.45619 1.52402 1.72635 2.15756 2.46411 3.09962 3.21557 3.71877 3.73851 3.97119 4.22384 4.38018 4.47136 4.51092 4.51836 4.54992 4.56705 4.68719 4.70337 4.82345 4.83399 4.94810 4.98257 5.04786 5.09445 5.11470 5.19160 5.20597 5.28237 5.31695 5.38026 5.50945 5.59851 5.65974 5.66828 5.68171 6.02236 6.14589 6.21304 6.43806 6.85868 7.03854 7.49860 7.60341 8.97025 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046713 B = 0.003742 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.263441 B = 7480.440856 C = 7659.956845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.622 5.622 3 C 0.693 3.307 4 O -0.644 6.644 5 N -0.725 5.725 6 C 0.166 3.834 7 C 0.052 3.948 8 C -0.118 4.118 9 C -0.118 4.118 10 C -0.531 4.531 11 H 0.044 0.956 12 C 0.030 3.970 13 N -0.899 5.899 14 Si 0.946 3.054 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.277 1.277 18 C 0.142 3.858 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.131 4.131 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.405 0.595 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 -20.221 -0.132 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.358 5.358 3 C 0.394 3.606 4 O -0.527 6.527 5 N -0.382 5.382 6 C 0.042 3.958 7 C 0.051 3.949 8 C -0.176 4.176 9 C -0.175 4.175 10 C -0.570 4.570 11 H 0.062 0.938 12 C -0.170 4.170 13 N -0.537 5.537 14 Si 0.772 3.228 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.203 1.203 18 C 0.038 3.962 19 C -0.167 4.167 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.170 4.170 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.243 0.757 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.069 -20.063 -0.131 20.297 hybrid contribution 0.365 1.395 0.003 1.442 sum -2.704 -18.668 -0.128 18.863 Atomic orbital electron populations 1.21943 0.77945 1.04283 1.02987 1.47017 1.07490 1.03750 1.77543 1.16222 0.84987 0.81523 0.77819 1.90825 1.13915 1.87104 1.60841 1.45352 1.10336 1.04203 1.78310 1.21133 0.94459 0.81700 0.98528 1.18356 0.92205 0.90723 0.93568 1.21647 0.99513 0.99698 0.96698 1.21643 0.99507 0.99702 0.96693 1.21239 0.92632 0.91586 1.51523 0.93800 1.25440 0.95667 1.01329 0.94592 1.69891 1.06403 1.26880 1.50539 0.85811 0.78576 0.79954 0.78430 1.20290 1.20681 1.20283 1.22083 0.96258 0.81224 0.96629 1.22681 1.02187 0.94951 0.96896 1.22054 1.02384 0.95595 0.95474 1.22051 1.02400 0.95230 0.95818 1.22700 1.02358 0.95420 0.96507 0.91389 0.91386 0.88061 0.75675 0.94856 0.94849 0.94686 0.91708 0.96422 0.96437 0.91728 0.94661 0.92955 0.90875 0.89777 0.92468 0.89762 0.91650 0.91708 0.89793 0.92725 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 8.87 127.77 1.13 2.45 16 2 N -0.62 -17.08 2.89 -833.22 -2.41 -19.49 16 3 C 0.69 26.20 8.28 179.06 1.48 27.68 16 4 O -0.64 -30.03 15.72 -3.98 -0.06 -30.09 16 5 N -0.73 -27.04 4.82 -478.54 -2.31 -29.35 16 6 C 0.17 7.49 4.50 86.38 0.39 7.88 16 7 C 0.05 2.47 0.50 -52.93 -0.03 2.45 16 8 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 9 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 10 C -0.53 -28.63 8.01 25.60 0.21 -28.43 16 11 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 12 C 0.03 1.57 5.15 84.65 0.44 2.01 16 13 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 14 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 C 0.14 3.44 3.29 46.31 0.15 3.59 16 19 C -0.13 -2.31 6.38 31.70 0.20 -2.11 16 20 C -0.12 -1.58 6.80 31.32 0.21 -1.37 16 21 C -0.12 -1.60 6.80 31.32 0.21 -1.39 16 22 C -0.13 -2.42 6.39 31.67 0.20 -2.22 16 23 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 24 H 0.07 1.30 6.36 -2.39 -0.02 1.29 16 25 H 0.10 1.33 6.38 -2.39 -0.02 1.31 16 26 H 0.40 13.06 3.89 -92.71 -0.36 12.70 16 27 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.32 6.86 -2.38 -0.02 1.30 16 30 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 34 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 35 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 36 H 0.07 2.27 7.00 -2.39 -0.02 2.26 16 37 H 0.08 1.28 7.08 -2.39 -0.02 1.26 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.31 6.36 -2.39 -0.02 1.29 16 Total: -1.00 -64.21 333.28 3.82 -60.39 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.61 Total: 20.32 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.77 Total: 1.09 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -4.52 Total: -96.68 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.09 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -64.21 3.82 -60.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.367 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds