Wall clock time and date at job start Mon Mar 30 2020 01:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00150 * 2 1 4 4 C 1.52999 * 109.46691 * 270.00045 * 3 2 1 5 5 C 1.53006 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.53003 * 117.49663 * 243.74292 * 5 4 3 7 7 C 1.53002 * 117.49643 * 175.08260 * 5 4 3 8 8 C 1.34780 * 120.00367 * 179.97438 * 2 1 3 9 9 O 1.21580 * 120.00232 * 180.02562 * 8 2 1 10 10 N 1.34784 * 119.99657 * 359.97438 * 8 2 1 11 11 C 1.46501 * 119.99881 * 180.02562 * 10 8 2 12 12 C 1.52992 * 109.46950 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47083 * 299.99972 * 12 11 10 14 14 C 1.53006 * 109.47279 * 59.99948 * 12 11 10 15 15 C 1.50699 * 109.47441 * 179.97438 * 12 11 10 16 16 H 1.08003 * 119.99465 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00495 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99779 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00001 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.46978 * 89.99979 * 19 17 15 21 21 H 1.48495 * 109.46971 * 209.99906 * 19 17 15 22 22 H 1.48504 * 109.47045 * 329.99919 * 19 17 15 23 23 H 1.09002 * 109.47045 * 90.00532 * 1 2 3 24 24 H 1.09000 * 109.47114 * 210.00242 * 1 2 3 25 25 H 1.08997 * 109.47404 * 330.00153 * 1 2 3 26 26 H 1.08993 * 109.47068 * 149.99463 * 3 2 1 27 27 H 1.09000 * 109.46872 * 29.99674 * 3 2 1 28 28 H 1.08993 * 109.47839 * 59.99891 * 4 3 2 29 29 H 1.09000 * 109.47160 * 299.99453 * 4 3 2 30 30 H 1.09002 * 115.55153 * 29.41498 * 5 4 3 31 31 H 1.08998 * 117.49856 * 0.02562 * 6 5 4 32 32 H 1.09000 * 117.49861 * 145.02337 * 6 5 4 33 33 H 1.08993 * 117.50251 * 214.97577 * 7 5 4 34 34 H 1.09003 * 117.49715 * 0.02562 * 7 5 4 35 35 H 0.97003 * 119.99530 * 0.02562 * 10 8 2 36 36 H 1.09005 * 109.46842 * 300.00140 * 11 10 8 37 37 H 1.08991 * 109.46974 * 60.00039 * 11 10 8 38 38 H 1.08996 * 109.47494 * 60.00298 * 13 12 11 39 39 H 1.09000 * 109.46920 * 179.97438 * 13 12 11 40 40 H 1.09002 * 109.46957 * 299.99736 * 13 12 11 41 41 H 1.08997 * 109.47123 * 59.99789 * 14 12 11 42 42 H 1.09000 * 109.47043 * 180.02562 * 14 12 11 43 43 H 1.08996 * 109.47120 * 299.99592 * 14 12 11 44 44 H 0.97000 * 119.99462 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2170 3.0357 -1.4425 6 6 2.5157 4.2557 -2.0431 7 6 3.6709 3.5894 -2.7947 8 6 2.1389 -1.1672 0.0005 9 8 3.3547 -1.1672 0.0010 10 7 1.4650 -2.3345 0.0016 11 6 2.1976 -3.6032 0.0027 12 6 1.2034 -4.7660 0.0031 13 6 0.3233 -4.6841 1.2520 14 6 0.3242 -4.6858 -1.2466 15 6 1.9568 -6.0712 0.0036 16 1 3.0368 -6.0711 0.0041 17 6 1.2674 -7.2652 0.0046 18 7 -0.0477 -7.2652 0.0045 19 14 2.2015 -8.8829 0.0060 20 1 2.4489 -9.3104 1.4064 21 1 1.3990 -9.9184 -0.6932 22 1 3.4991 -8.7059 -0.6942 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 3.1498 1.1384 0.5139 27 1 1.6084 2.0284 0.5138 28 1 1.5002 1.8407 -1.9564 29 1 3.0416 0.9507 -1.9563 30 1 3.8702 3.2017 -0.5858 31 1 1.5096 4.1143 -2.4378 32 1 2.7078 5.2244 -1.5818 33 1 4.6224 4.1200 -2.8275 34 1 3.4245 3.0097 -3.6843 35 1 0.4950 -2.3344 0.0016 36 1 2.8242 -3.6616 -0.8873 37 1 2.8242 -3.6601 0.8927 38 1 -0.2218 -3.7402 1.2512 39 1 -0.3854 -5.5124 1.2520 40 1 0.9496 -4.7413 2.1422 41 1 0.9511 -4.7441 -2.1363 42 1 -0.3844 -5.5141 -1.2460 43 1 -0.2209 -3.7420 -1.2474 44 1 -0.5327 -8.1053 0.0056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459260463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:51 Heat of formation + Delta-G solvation = -13.617495 kcal Electronic energy + Delta-G solvation = -21006.142976 eV Core-core repulsion = 17959.255981 eV Total energy + Delta-G solvation = -3046.886995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84996 -37.81775 -36.50486 -35.20750 -33.32097 -31.21679 -30.11535 -26.64982 -25.70535 -25.64521 -24.99279 -23.18645 -22.53087 -20.58801 -19.57737 -18.81311 -17.77884 -16.06073 -16.00978 -15.74707 -15.09196 -14.75205 -14.39710 -14.21480 -13.60856 -13.50659 -13.25292 -12.83128 -12.56886 -12.48432 -12.24438 -12.06143 -11.75171 -11.48623 -11.36681 -11.19041 -11.15721 -10.84681 -10.67155 -10.50283 -10.35757 -10.18257 -10.01167 -9.68180 -9.60714 -9.27472 -8.76932 -8.63073 -8.38373 -8.09723 -6.00347 -4.10067 3.00472 3.29849 3.36698 3.41271 3.60850 3.66890 4.35138 4.47068 4.57438 4.74572 4.76934 5.04167 5.13404 5.23696 5.26497 5.37491 5.43334 5.51371 5.58680 5.67125 5.71520 5.90750 5.92042 6.01977 6.24553 6.24929 6.39971 6.52936 6.67924 6.83327 6.84405 6.95153 7.05597 7.14076 7.28973 7.41809 7.58028 7.71746 8.03150 8.14560 8.40093 8.47040 8.89896 9.07920 9.55610 11.01168 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038641 B = 0.003484 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.446499 B = 8035.671380 C = 8309.792193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.641 5.641 3 C 0.140 3.860 4 C -0.105 4.105 5 C -0.147 4.147 6 C -0.183 4.183 7 C -0.182 4.182 8 C 0.698 3.302 9 O -0.597 6.597 10 N -0.733 5.733 11 C 0.149 3.851 12 C 0.056 3.944 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.505 4.505 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.394 0.606 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 18.474 -1.705 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.379 5.379 3 C 0.016 3.984 4 C -0.144 4.144 5 C -0.165 4.165 6 C -0.220 4.220 7 C -0.219 4.219 8 C 0.400 3.600 9 O -0.476 6.476 10 N -0.389 5.389 11 C 0.026 3.974 12 C 0.055 3.945 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.526 5.526 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.494 18.284 -1.697 18.370 hybrid contribution -0.099 -0.836 -0.060 0.844 sum -0.592 17.448 -1.758 17.547 Atomic orbital electron populations 1.21686 0.80261 1.02802 1.01514 1.47047 1.06078 1.05187 1.79610 1.21226 0.97611 0.83409 0.96158 1.21575 0.99577 0.95091 0.98156 1.22246 1.02771 0.94169 0.97343 1.23051 0.97333 0.96928 1.04669 1.22960 0.98821 1.04183 0.95901 1.16030 0.85423 0.80516 0.78080 1.90869 1.11685 1.86348 1.58654 1.45664 1.10082 1.05121 1.78013 1.21579 0.94999 0.80518 1.00301 1.18359 0.91953 0.91389 0.92771 1.21820 1.00245 0.99004 0.97654 1.21814 1.00228 0.99013 0.97628 1.20998 0.92923 0.89732 1.50675 0.92394 1.24879 0.94877 0.98951 0.94824 1.69809 1.05776 1.26237 1.50732 0.86568 0.79914 0.83281 0.78092 1.20729 1.21296 1.19882 0.92988 0.91356 0.91178 0.89915 0.91004 0.91975 0.90925 0.87651 0.88924 0.89056 0.88927 0.88864 0.76991 0.93002 0.93007 0.97694 0.89622 0.95431 0.95451 0.89642 0.97663 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.25 59.84 0.61 1.47 16 2 N -0.64 -9.05 2.87 -187.35 -0.54 -9.59 16 3 C 0.14 1.67 5.41 -4.04 -0.02 1.65 16 4 C -0.11 -1.19 5.82 -26.73 -0.16 -1.34 16 5 C -0.15 -1.40 5.73 -90.61 -0.52 -1.92 16 6 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 7 C -0.18 -1.61 10.26 -26.69 -0.27 -1.89 16 8 C 0.70 13.06 8.28 -86.91 -0.72 12.34 16 9 O -0.60 -13.33 15.92 5.30 0.08 -13.24 16 10 N -0.73 -13.79 4.82 -65.23 -0.31 -14.11 16 11 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 12 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 13 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 14 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 15 C -0.50 -13.37 8.01 -34.44 -0.28 -13.65 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.89 -23.72 9.35 55.43 0.52 -23.21 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 25 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 26 H 0.08 1.14 7.42 -51.93 -0.39 0.75 16 27 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 28 H 0.06 0.65 7.87 -51.93 -0.41 0.25 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.09 0.71 8.03 -51.93 -0.42 0.30 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.39 6.69 3.89 -40.82 -0.16 6.53 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 39 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 44 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -29.41 346.71 -8.89 -38.29 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.63 Total: 5.00 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.21 Total: -4.21 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.33 Total: -46.90 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.41 -8.89 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.677 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds