Wall clock time and date at job start Mon Mar 30 2020 01:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00150 * 2 1 4 4 C 1.52999 * 109.46691 * 270.00045 * 3 2 1 5 5 C 1.53006 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.53003 * 117.49663 * 243.74292 * 5 4 3 7 7 C 1.53002 * 117.49643 * 175.08260 * 5 4 3 8 8 C 1.34780 * 120.00367 * 179.97438 * 2 1 3 9 9 O 1.21580 * 120.00232 * 180.02562 * 8 2 1 10 10 N 1.34784 * 119.99657 * 359.97438 * 8 2 1 11 11 C 1.46501 * 119.99881 * 180.02562 * 10 8 2 12 12 C 1.52992 * 109.46950 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47083 * 299.99972 * 12 11 10 14 14 C 1.53006 * 109.47279 * 59.99948 * 12 11 10 15 15 C 1.50699 * 109.47441 * 179.97438 * 12 11 10 16 16 H 1.08003 * 119.99465 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00495 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99779 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00001 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.46978 * 89.99979 * 19 17 15 21 21 H 1.48495 * 109.46971 * 209.99906 * 19 17 15 22 22 H 1.48504 * 109.47045 * 329.99919 * 19 17 15 23 23 H 1.09002 * 109.47045 * 90.00532 * 1 2 3 24 24 H 1.09000 * 109.47114 * 210.00242 * 1 2 3 25 25 H 1.08997 * 109.47404 * 330.00153 * 1 2 3 26 26 H 1.08993 * 109.47068 * 149.99463 * 3 2 1 27 27 H 1.09000 * 109.46872 * 29.99674 * 3 2 1 28 28 H 1.08993 * 109.47839 * 59.99891 * 4 3 2 29 29 H 1.09000 * 109.47160 * 299.99453 * 4 3 2 30 30 H 1.09002 * 115.55153 * 29.41498 * 5 4 3 31 31 H 1.08998 * 117.49856 * 0.02562 * 6 5 4 32 32 H 1.09000 * 117.49861 * 145.02337 * 6 5 4 33 33 H 1.08993 * 117.50251 * 214.97577 * 7 5 4 34 34 H 1.09003 * 117.49715 * 0.02562 * 7 5 4 35 35 H 0.97003 * 119.99530 * 0.02562 * 10 8 2 36 36 H 1.09005 * 109.46842 * 300.00140 * 11 10 8 37 37 H 1.08991 * 109.46974 * 60.00039 * 11 10 8 38 38 H 1.08996 * 109.47494 * 60.00298 * 13 12 11 39 39 H 1.09000 * 109.46920 * 179.97438 * 13 12 11 40 40 H 1.09002 * 109.46957 * 299.99736 * 13 12 11 41 41 H 1.08997 * 109.47123 * 59.99789 * 14 12 11 42 42 H 1.09000 * 109.47043 * 180.02562 * 14 12 11 43 43 H 1.08996 * 109.47120 * 299.99592 * 14 12 11 44 44 H 0.97000 * 119.99462 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2170 3.0357 -1.4425 6 6 2.5157 4.2557 -2.0431 7 6 3.6709 3.5894 -2.7947 8 6 2.1389 -1.1672 0.0005 9 8 3.3547 -1.1672 0.0010 10 7 1.4650 -2.3345 0.0016 11 6 2.1976 -3.6032 0.0027 12 6 1.2034 -4.7660 0.0031 13 6 0.3233 -4.6841 1.2520 14 6 0.3242 -4.6858 -1.2466 15 6 1.9568 -6.0712 0.0036 16 1 3.0368 -6.0711 0.0041 17 6 1.2674 -7.2652 0.0046 18 7 -0.0477 -7.2652 0.0045 19 14 2.2015 -8.8829 0.0060 20 1 2.4489 -9.3104 1.4064 21 1 1.3990 -9.9184 -0.6932 22 1 3.4991 -8.7059 -0.6942 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 3.1498 1.1384 0.5139 27 1 1.6084 2.0284 0.5138 28 1 1.5002 1.8407 -1.9564 29 1 3.0416 0.9507 -1.9563 30 1 3.8702 3.2017 -0.5858 31 1 1.5096 4.1143 -2.4378 32 1 2.7078 5.2244 -1.5818 33 1 4.6224 4.1200 -2.8275 34 1 3.4245 3.0097 -3.6843 35 1 0.4950 -2.3344 0.0016 36 1 2.8242 -3.6616 -0.8873 37 1 2.8242 -3.6601 0.8927 38 1 -0.2218 -3.7402 1.2512 39 1 -0.3854 -5.5124 1.2520 40 1 0.9496 -4.7413 2.1422 41 1 0.9511 -4.7441 -2.1363 42 1 -0.3844 -5.5141 -1.2460 43 1 -0.2209 -3.7420 -1.2474 44 1 -0.5327 -8.1053 0.0056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459260463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:50 Heat of formation + Delta-G solvation = -29.304952 kcal Electronic energy + Delta-G solvation = -21006.823235 eV Core-core repulsion = 17959.255981 eV Total energy + Delta-G solvation = -3047.567254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25222 -38.74862 -38.11532 -36.47993 -35.03933 -32.87513 -31.32790 -27.71954 -27.56803 -27.43671 -26.70611 -24.38705 -23.19239 -21.37216 -21.01859 -20.61739 -19.12414 -17.80776 -17.28618 -16.96067 -16.63995 -16.20545 -15.53283 -15.44112 -15.01355 -14.78785 -14.75100 -14.24689 -14.04763 -13.97411 -13.32804 -13.19528 -13.10183 -13.03456 -12.68763 -12.59467 -12.41619 -12.28250 -12.24813 -12.13332 -12.05550 -11.48820 -11.33295 -11.21976 -11.06263 -10.77704 -10.70844 -10.39732 -10.08282 -9.43374 -8.02193 -6.17769 1.43050 1.45634 1.54079 1.76131 2.18862 2.46364 2.92346 3.12822 3.21405 3.78989 4.01658 4.03659 4.18026 4.31505 4.39534 4.42947 4.52454 4.59132 4.62740 4.70321 4.74665 4.81348 4.89072 4.96919 5.04291 5.05118 5.05634 5.09745 5.14223 5.19507 5.29085 5.37986 5.41326 5.61417 5.66027 5.67037 5.68006 5.98211 6.14842 6.21610 6.43981 6.86119 7.05094 7.49885 7.62264 8.96964 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038641 B = 0.003484 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.446499 B = 8035.671380 C = 8309.792193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.633 5.633 3 C 0.137 3.863 4 C -0.095 4.095 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.191 4.191 8 C 0.692 3.308 9 O -0.641 6.641 10 N -0.727 5.727 11 C 0.167 3.833 12 C 0.053 3.947 13 C -0.119 4.119 14 C -0.118 4.118 15 C -0.530 4.530 16 H 0.044 0.956 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.946 3.054 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.277 1.277 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.404 0.596 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.016 0.984 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 20.335 -1.637 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.370 5.370 3 C 0.014 3.986 4 C -0.134 4.134 5 C -0.178 4.178 6 C -0.201 4.201 7 C -0.228 4.228 8 C 0.393 3.607 9 O -0.523 6.523 10 N -0.384 5.384 11 C 0.042 3.958 12 C 0.052 3.948 13 C -0.177 4.177 14 C -0.176 4.176 15 C -0.569 4.569 16 H 0.062 0.938 17 C -0.171 4.171 18 N -0.538 5.538 19 Si 0.772 3.228 20 H -0.204 1.204 21 H -0.207 1.207 22 H -0.202 1.202 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.243 0.757 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.956 20.187 -1.631 20.347 hybrid contribution 0.330 -1.345 -0.091 1.388 sum -1.626 18.842 -1.722 18.990 Atomic orbital electron populations 1.21984 0.77594 1.04459 1.02881 1.47133 1.07752 1.04174 1.77892 1.21418 0.97201 0.83147 0.96794 1.21432 0.99700 0.95003 0.97273 1.22192 1.03639 0.94083 0.97907 1.23125 0.97210 0.96632 1.03112 1.23041 0.99931 1.04518 0.95332 1.16237 0.85010 0.81524 0.77883 1.90837 1.13821 1.87131 1.60504 1.45371 1.10344 1.04279 1.78391 1.21117 0.94430 0.81732 0.98498 1.18349 0.92192 0.90733 0.93529 1.21657 0.99547 0.99734 0.96735 1.21649 0.99525 0.99706 0.96725 1.21274 0.92634 0.91600 1.51361 0.93811 1.25444 0.95667 1.01341 0.94618 1.69903 1.06404 1.26799 1.50649 0.85750 0.78752 0.80236 0.78018 1.20450 1.20707 1.20158 0.91716 0.91570 0.87720 0.92231 0.87219 0.90795 0.94588 0.87518 0.88185 0.87543 0.88175 0.89434 0.75708 0.94950 0.94811 0.94630 0.91716 0.96348 0.96453 0.91724 0.94667 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.25 127.77 1.31 2.60 16 2 N -0.63 -16.72 2.87 -864.92 -2.49 -19.21 16 3 C 0.14 3.06 5.41 86.38 0.47 3.52 16 4 C -0.10 -2.04 5.82 30.60 0.18 -1.86 16 5 C -0.16 -2.80 5.73 -10.79 -0.06 -2.86 16 6 C -0.16 -2.19 10.18 30.62 0.31 -1.88 16 7 C -0.19 -3.13 10.26 30.62 0.31 -2.82 16 8 C 0.69 25.68 8.28 179.05 1.48 27.17 16 9 O -0.64 -29.35 15.92 -3.97 -0.06 -29.41 16 10 N -0.73 -26.87 4.82 -478.54 -2.31 -29.18 16 11 C 0.17 7.48 4.50 86.38 0.39 7.87 16 12 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 13 C -0.12 -5.35 8.08 71.98 0.58 -4.76 16 14 C -0.12 -5.34 8.08 71.98 0.58 -4.75 16 15 C -0.53 -28.55 8.01 25.60 0.21 -28.35 16 16 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 17 C 0.03 1.54 5.15 84.65 0.44 1.98 16 18 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 19 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.22 6.36 -2.39 -0.02 1.21 16 25 H 0.10 1.18 7.89 -2.39 -0.02 1.16 16 26 H 0.06 1.63 7.42 -2.39 -0.02 1.61 16 27 H 0.11 1.64 7.89 -2.39 -0.02 1.63 16 28 H 0.07 1.39 7.87 -2.39 -0.02 1.37 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 1.83 8.08 -2.39 -0.02 1.82 16 31 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.40 12.94 3.89 -92.71 -0.36 12.58 16 36 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 1.33 6.86 -2.39 -0.02 1.32 16 39 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 43 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 44 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -64.59 346.71 4.14 -60.45 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.60 Total: 21.91 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.17 Total: -1.69 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -4.59 Total: -96.24 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.06 Total: -29.41 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -64.59 4.14 -60.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.142 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds