Wall clock time and date at job start Mon Mar 30 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46600 * 305.00222 * 4 3 2 6 6 N 1.46901 * 109.47133 * 64.99917 * 4 3 2 7 7 C 1.50693 * 109.47471 * 185.00271 * 4 3 2 8 8 O 1.21278 * 120.00208 * 260.00017 * 7 4 3 9 9 N 1.34781 * 120.00261 * 79.99562 * 7 4 3 10 10 C 1.46928 * 120.62859 * 359.72650 * 9 7 4 11 11 C 1.52763 * 109.00718 * 233.58371 * 10 9 7 12 12 C 1.53046 * 109.38042 * 305.58604 * 11 10 9 13 13 C 1.52998 * 109.45674 * 181.26157 * 12 11 10 14 14 C 1.50702 * 109.47434 * 64.93392 * 13 12 11 15 15 H 1.08000 * 119.99554 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00076 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00084 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99706 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47118 * 90.00170 * 18 16 14 20 20 H 1.48504 * 109.46925 * 209.99963 * 18 16 14 21 21 H 1.48500 * 109.47419 * 329.99905 * 18 16 14 22 22 C 1.53039 * 109.53508 * 61.24145 * 12 11 10 23 23 C 1.46924 * 120.63336 * 180.02562 * 9 7 4 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.00892 * 110.99802 * 60.00229 * 6 4 3 32 32 H 1.00896 * 111.00006 * 183.95787 * 6 4 3 33 33 H 1.09001 * 109.58719 * 353.41475 * 10 9 7 34 34 H 1.08992 * 109.58800 * 113.84008 * 10 9 7 35 35 H 1.08997 * 109.56346 * 185.55452 * 11 10 9 36 36 H 1.08999 * 109.36434 * 65.49446 * 11 10 9 37 37 H 1.08998 * 109.45809 * 301.21977 * 12 11 10 38 38 H 1.08999 * 109.46878 * 184.92997 * 13 12 11 39 39 H 1.08996 * 109.47098 * 304.93076 * 13 12 11 40 40 H 0.97004 * 119.99754 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.49100 * 178.67925 * 22 12 11 42 42 H 1.08998 * 109.52791 * 58.60456 * 22 12 11 43 43 H 1.08994 * 109.58917 * 246.16096 * 23 9 7 44 44 H 1.09006 * 109.58576 * 6.44544 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 7 4.0602 0.8571 -1.2543 7 6 4.0722 2.8580 0.1245 8 8 4.4467 3.4570 -0.8612 9 7 4.1052 3.4583 1.3308 10 6 3.6492 2.7476 2.5333 11 6 2.5997 3.5986 3.2461 12 6 3.1741 4.9908 3.5182 13 6 2.1356 5.8345 4.2601 14 6 1.8788 5.2350 5.6187 15 1 2.4036 4.3412 5.9224 16 6 0.9740 5.8273 6.4738 17 7 0.3354 6.9159 6.1042 18 14 0.6554 5.0837 8.1575 19 1 1.5961 5.6718 9.1446 20 1 -0.7411 5.3743 8.5707 21 1 0.8576 3.6138 8.0959 22 6 3.5270 5.6671 2.1915 23 6 4.5917 4.8379 1.4675 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.7371 1.3859 -2.0504 32 1 5.0667 0.7866 -1.2514 33 1 3.2102 1.7915 2.2483 34 1 4.4942 2.5795 3.2009 35 1 2.3270 3.1267 4.1900 36 1 1.7160 3.6868 2.6142 37 1 4.0719 4.9000 4.1297 38 1 2.5099 6.8515 4.3767 39 1 1.2071 5.8523 3.6895 40 1 -0.3015 7.3325 6.7058 41 1 3.9141 6.6676 2.3849 42 1 2.6348 5.7363 1.5692 43 1 5.5153 4.8440 2.0462 44 1 4.7767 5.2596 0.4795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514728513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:15 Heat of formation + Delta-G solvation = -71.225741 kcal Electronic energy + Delta-G solvation = -21477.784148 eV Core-core repulsion = 18428.399072 eV Total energy + Delta-G solvation = -3049.385076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36869 -37.63349 -36.13402 -34.05297 -32.86683 -32.16965 -30.88687 -28.46213 -27.81558 -25.17061 -23.75368 -22.84144 -21.65590 -21.06808 -19.83017 -18.56536 -17.37338 -16.34378 -16.30906 -15.89422 -15.27406 -14.67608 -14.54764 -14.08398 -13.79635 -13.75594 -13.43964 -13.25880 -12.97299 -12.81590 -12.36949 -12.12787 -11.87740 -11.79423 -11.23422 -11.21319 -11.10085 -11.02101 -10.84242 -10.74217 -10.70379 -10.49567 -10.19171 -10.09173 -9.70833 -9.32206 -9.01460 -8.83655 -8.42248 -8.38215 -6.03285 -4.05658 2.59016 3.11817 3.28382 3.35477 3.37114 4.31172 4.42061 4.49810 4.77059 4.87647 5.07473 5.09963 5.17662 5.31494 5.34978 5.42963 5.47490 5.50718 5.62772 5.64087 5.69790 5.79471 5.81794 5.93833 6.00197 6.04911 6.17008 6.31198 6.31961 6.34808 6.46697 6.60961 6.81934 6.90685 6.94182 7.06026 7.20938 7.51229 7.62846 7.77040 7.96002 8.17411 8.38056 9.00783 9.58463 11.07947 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.004754 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.790408 B = 5888.583535 C = 6814.449140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.109 4.109 4 C 0.075 3.925 5 H 0.102 0.898 6 N -0.818 5.818 7 C 0.480 3.520 8 O -0.559 6.559 9 N -0.599 5.599 10 C 0.099 3.901 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.129 4.129 23 C 0.109 3.891 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.348 0.652 32 H 0.342 0.658 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 -11.992 -10.755 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.148 4.148 4 C -0.041 4.041 5 H 0.120 0.880 6 N -0.346 5.346 7 C 0.266 3.734 8 O -0.438 6.438 9 N -0.332 5.332 10 C -0.023 4.023 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.167 4.167 23 C -0.013 4.013 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.014 -12.207 -11.002 17.182 hybrid contribution 0.239 0.777 1.040 1.320 sum 5.253 -11.431 -9.962 16.047 Atomic orbital electron populations 1.21804 0.96050 1.01475 1.01930 1.21407 0.95253 0.95662 1.02729 1.21626 0.91423 0.98534 1.03180 1.21636 0.97302 0.89988 0.95164 0.87985 1.59174 1.16415 1.55635 1.03422 1.22073 0.78193 0.90328 0.82826 1.90650 1.49841 1.66486 1.36845 1.48282 1.62593 1.14841 1.07464 1.21953 0.98543 0.95721 0.86125 1.21829 0.96741 0.96489 1.00619 1.21192 1.00020 0.94645 0.94065 1.19120 0.92921 0.94511 0.94367 1.21222 1.23142 1.11062 1.00099 0.92604 1.25017 0.96064 0.94993 0.98332 1.69963 1.27311 1.19690 1.36464 0.86649 0.77459 0.79538 0.84670 1.20738 1.21291 1.19880 1.22009 0.98185 0.98756 0.97730 1.21673 0.96944 0.81258 1.01463 0.92834 0.92578 0.92926 0.92165 0.90768 0.91481 0.90568 0.83780 0.84564 0.90123 0.91481 0.89529 0.92251 0.92345 0.96617 0.96641 0.93023 0.91152 0.92137 0.91893 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.11 -1.06 5.82 -26.73 -0.16 -1.22 16 3 C -0.11 -1.17 4.51 -26.73 -0.12 -1.30 16 4 C 0.07 0.82 2.29 -68.86 -0.16 0.66 16 5 H 0.10 1.01 6.81 -51.93 -0.35 0.66 16 6 N -0.82 -8.29 8.44 -5.65 -0.05 -8.34 16 7 C 0.48 6.81 6.94 -10.99 -0.08 6.74 16 8 O -0.56 -9.59 15.66 5.56 0.09 -9.51 16 9 N -0.60 -8.50 2.98 -173.06 -0.52 -9.02 16 10 C 0.10 1.29 5.73 -3.93 -0.02 1.27 16 11 C -0.12 -1.96 5.17 -26.83 -0.14 -2.10 16 12 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.76 8.39 -34.44 -0.29 -14.04 16 15 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 18 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 22 C -0.13 -2.15 5.36 -26.63 -0.14 -2.29 16 23 C 0.11 1.63 6.43 -3.73 -0.02 1.60 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.88 6.94 -51.93 -0.36 0.52 16 31 H 0.35 3.73 8.58 -39.30 -0.34 3.39 16 32 H 0.34 3.24 9.06 -39.29 -0.36 2.89 16 33 H 0.08 0.87 4.82 -51.93 -0.25 0.62 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.30 7.00 -51.93 -0.36 0.93 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -30.02 342.89 -8.55 -38.56 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.78 Total: 4.15 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.17 Total: -11.40 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.17 Total: -42.92 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.02 -8.55 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514728513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.662 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds