Wall clock time and date at job start Mon Mar 30 2020 00:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46600 * 305.00222 * 4 3 2 6 6 N 1.46901 * 109.47133 * 64.99917 * 4 3 2 7 7 C 1.50693 * 109.47471 * 185.00271 * 4 3 2 8 8 O 1.21278 * 120.00208 * 260.00017 * 7 4 3 9 9 N 1.34781 * 120.00261 * 79.99562 * 7 4 3 10 10 C 1.46928 * 120.62859 * 359.72650 * 9 7 4 11 11 C 1.52763 * 109.00718 * 233.58371 * 10 9 7 12 12 C 1.53046 * 109.38042 * 305.58604 * 11 10 9 13 13 C 1.52998 * 109.45674 * 181.26157 * 12 11 10 14 14 C 1.50702 * 109.47434 * 64.93392 * 13 12 11 15 15 H 1.08000 * 119.99554 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00076 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00084 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99706 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47118 * 90.00170 * 18 16 14 20 20 H 1.48504 * 109.46925 * 209.99963 * 18 16 14 21 21 H 1.48500 * 109.47419 * 329.99905 * 18 16 14 22 22 C 1.53039 * 109.53508 * 61.24145 * 12 11 10 23 23 C 1.46924 * 120.63336 * 180.02562 * 9 7 4 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.00892 * 110.99802 * 60.00229 * 6 4 3 32 32 H 1.00896 * 111.00006 * 183.95787 * 6 4 3 33 33 H 1.09001 * 109.58719 * 353.41475 * 10 9 7 34 34 H 1.08992 * 109.58800 * 113.84008 * 10 9 7 35 35 H 1.08997 * 109.56346 * 185.55452 * 11 10 9 36 36 H 1.08999 * 109.36434 * 65.49446 * 11 10 9 37 37 H 1.08998 * 109.45809 * 301.21977 * 12 11 10 38 38 H 1.08999 * 109.46878 * 184.92997 * 13 12 11 39 39 H 1.08996 * 109.47098 * 304.93076 * 13 12 11 40 40 H 0.97004 * 119.99754 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.49100 * 178.67925 * 22 12 11 42 42 H 1.08998 * 109.52791 * 58.60456 * 22 12 11 43 43 H 1.08994 * 109.58917 * 246.16096 * 23 9 7 44 44 H 1.09006 * 109.58576 * 6.44544 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 7 4.0602 0.8571 -1.2543 7 6 4.0722 2.8580 0.1245 8 8 4.4467 3.4570 -0.8612 9 7 4.1052 3.4583 1.3308 10 6 3.6492 2.7476 2.5333 11 6 2.5997 3.5986 3.2461 12 6 3.1741 4.9908 3.5182 13 6 2.1356 5.8345 4.2601 14 6 1.8788 5.2350 5.6187 15 1 2.4036 4.3412 5.9224 16 6 0.9740 5.8273 6.4738 17 7 0.3354 6.9159 6.1042 18 14 0.6554 5.0837 8.1575 19 1 1.5961 5.6718 9.1446 20 1 -0.7411 5.3743 8.5707 21 1 0.8576 3.6138 8.0959 22 6 3.5270 5.6671 2.1915 23 6 4.5917 4.8379 1.4675 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.7371 1.3859 -2.0504 32 1 5.0667 0.7866 -1.2514 33 1 3.2102 1.7915 2.2483 34 1 4.4942 2.5795 3.2009 35 1 2.3270 3.1267 4.1900 36 1 1.7160 3.6868 2.6142 37 1 4.0719 4.9000 4.1297 38 1 2.5099 6.8515 4.3767 39 1 1.2071 5.8523 3.6895 40 1 -0.3015 7.3325 6.7058 41 1 3.9141 6.6676 2.3849 42 1 2.6348 5.7363 1.5692 43 1 5.5153 4.8440 2.0462 44 1 4.7767 5.2596 0.4795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514728513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:14 Heat of formation + Delta-G solvation = -90.255642 kcal Electronic energy + Delta-G solvation = -21478.609347 eV Core-core repulsion = 18428.399072 eV Total energy + Delta-G solvation = -3050.210274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50501 -38.94380 -37.07007 -35.71386 -34.00256 -33.64815 -32.14629 -29.96884 -28.89934 -26.64700 -25.03219 -24.13476 -23.09666 -21.92438 -21.23153 -19.77458 -18.48360 -18.36954 -17.27442 -16.94834 -16.53011 -16.30370 -15.60712 -15.33255 -15.13033 -14.81363 -14.58417 -14.51181 -14.29558 -14.05020 -13.85936 -13.42224 -13.06166 -12.99221 -12.76757 -12.62351 -12.51780 -12.31589 -12.17371 -11.99384 -11.90958 -11.75793 -11.47721 -11.38165 -11.20375 -10.99084 -10.86007 -10.51436 -9.75850 -9.64961 -8.15505 -6.25208 1.43224 1.43438 1.48566 1.54160 2.01704 2.43809 3.18680 3.36829 3.59926 3.86587 3.92802 4.00866 4.06433 4.10295 4.18968 4.32656 4.38220 4.42740 4.53176 4.65120 4.70933 4.78638 4.81216 4.86584 4.94718 4.98614 5.06337 5.09248 5.28476 5.29842 5.31622 5.39744 5.42431 5.53200 5.58043 5.58425 5.81271 5.89610 5.97656 6.29001 6.38623 6.42398 6.91781 7.06090 7.43967 8.96568 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.004754 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.790408 B = 5888.583535 C = 6814.449140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.107 4.107 4 C 0.083 3.917 5 H 0.123 0.877 6 N -0.811 5.811 7 C 0.476 3.524 8 O -0.591 6.591 9 N -0.602 5.602 10 C 0.108 3.892 11 C -0.113 4.113 12 C -0.073 4.073 13 C 0.033 3.967 14 C -0.525 4.525 15 H 0.069 0.931 16 C -0.003 4.003 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.257 1.257 22 C -0.121 4.121 23 C 0.116 3.884 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.345 0.655 32 H 0.348 0.652 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.063 0.937 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.260 0.740 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -14.657 -10.197 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C -0.145 4.145 4 C -0.032 4.032 5 H 0.141 0.859 6 N -0.339 5.339 7 C 0.264 3.736 8 O -0.473 6.473 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.151 4.151 12 C -0.092 4.092 13 C -0.004 4.004 14 C -0.563 4.563 15 H 0.087 0.913 16 C -0.200 4.200 17 N -0.580 5.580 18 Si 0.785 3.215 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.181 1.181 22 C -0.159 4.159 23 C -0.007 4.007 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.044 -14.901 -10.445 19.174 hybrid contribution -0.100 1.671 0.824 1.866 sum 5.944 -13.230 -9.621 17.405 Atomic orbital electron populations 1.21811 0.96043 1.02051 1.01440 1.21358 0.95201 0.94530 1.03256 1.21603 0.91267 0.99383 1.02255 1.21695 0.97240 0.88003 0.96289 0.85896 1.59192 1.16885 1.54882 1.02946 1.22747 0.77338 0.91407 0.82101 1.90637 1.51225 1.67562 1.37832 1.48376 1.62420 1.14520 1.08052 1.21963 0.98128 0.95710 0.85615 1.21708 0.97438 0.95426 1.00539 1.21040 0.98371 0.95363 0.94402 1.19015 0.93098 0.93946 0.94387 1.21660 1.22699 1.11215 1.00718 0.91281 1.25962 0.96003 0.95395 1.02650 1.70117 1.28299 1.21451 1.38090 0.85525 0.77038 0.79495 0.79477 1.20196 1.21476 1.18051 1.21886 0.98308 0.99156 0.96577 1.21541 0.96670 0.81568 1.00940 0.91732 0.93266 0.93271 0.91067 0.90706 0.92712 0.91319 0.84126 0.83927 0.87285 0.89575 0.90275 0.93521 0.91809 0.99798 0.99777 0.93104 0.91254 0.93774 0.90129 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.11 -1.73 5.82 30.60 0.18 -1.55 16 3 C -0.11 -2.10 4.51 30.60 0.14 -1.96 16 4 C 0.08 1.62 2.29 44.17 0.10 1.72 16 5 H 0.12 1.92 6.81 -2.38 -0.02 1.91 16 6 N -0.81 -14.60 8.44 -171.79 -1.45 -16.05 16 7 C 0.48 12.67 6.94 87.65 0.61 13.28 16 8 O -0.59 -19.70 15.66 -3.02 -0.05 -19.74 16 9 N -0.60 -15.87 2.98 -819.83 -2.44 -18.31 16 10 C 0.11 2.49 5.73 86.22 0.49 2.98 16 11 C -0.11 -3.60 5.17 30.53 0.16 -3.44 16 12 C -0.07 -2.75 2.10 -10.77 -0.02 -2.77 16 13 C 0.03 1.65 4.45 29.85 0.13 1.78 16 14 C -0.52 -28.07 8.39 25.60 0.21 -27.85 16 15 H 0.07 3.44 7.05 -2.91 -0.02 3.42 16 16 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 17 N -0.94 -56.61 13.29 21.44 0.28 -56.32 16 18 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 C -0.12 -4.07 5.36 30.66 0.16 -3.91 16 23 C 0.12 3.31 6.43 86.35 0.56 3.86 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.24 7.75 -2.39 -0.02 1.22 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.46 6.94 -2.39 -0.02 1.45 16 31 H 0.35 6.86 8.58 -89.70 -0.77 6.09 16 32 H 0.35 5.75 9.06 -89.70 -0.81 4.94 16 33 H 0.11 1.94 4.82 -2.39 -0.01 1.93 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 2.65 6.91 -2.39 -0.02 2.63 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 2.33 7.00 -2.38 -0.02 2.32 16 Total: -1.00 -65.70 342.89 1.67 -64.03 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.60 Total: 21.01 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.90 Total: -19.44 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.61 Total: -90.69 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -65.70 1.67 -64.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514728513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.225 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds