Wall clock time and date at job start Mon Mar 30 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47406 * 120.00226 * 2 1 3 5 5 N 1.46498 * 109.46938 * 175.00212 * 4 2 1 6 6 C 1.34782 * 119.99675 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00071 * 4.97931 * 6 5 4 8 8 N 1.34774 * 119.99915 * 184.98301 * 6 5 4 9 9 C 1.46926 * 120.63121 * 174.77166 * 8 6 5 10 10 C 1.53195 * 108.89465 * 126.33965 * 9 8 6 11 11 C 1.53354 * 109.14570 * 54.57617 * 10 9 8 12 12 C 1.52998 * 109.41339 * 178.67370 * 11 10 9 13 13 C 1.50701 * 109.47671 * 295.12915 * 12 11 10 14 14 H 1.08004 * 119.99565 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00388 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99835 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47058 * 89.99862 * 17 15 13 19 19 H 1.48501 * 109.47118 * 209.99865 * 17 15 13 20 20 H 1.48503 * 109.47450 * 329.99994 * 17 15 13 21 21 C 1.53040 * 109.60905 * 298.70899 * 11 10 9 22 22 C 1.46926 * 120.63157 * 354.78914 * 8 6 5 23 23 H 1.08996 * 109.47343 * 299.99585 * 1 2 3 24 24 H 1.09001 * 109.47612 * 59.99779 * 1 2 3 25 25 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46748 * 240.00904 * 2 1 3 27 27 H 1.08999 * 109.47111 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47741 * 300.00466 * 3 2 1 29 29 H 1.09001 * 109.47221 * 60.00349 * 3 2 1 30 30 H 1.09007 * 109.46974 * 55.00285 * 4 2 1 31 31 H 1.08998 * 109.47220 * 295.00553 * 4 2 1 32 32 H 0.96993 * 120.00686 * 359.97438 * 5 4 2 33 33 H 1.08999 * 109.58363 * 246.19988 * 9 8 6 34 34 H 1.09002 * 109.58625 * 6.48116 * 9 8 6 35 35 H 1.08997 * 109.49623 * 174.65400 * 10 9 8 36 36 H 1.09002 * 109.49577 * 294.75334 * 10 9 8 37 37 H 1.08994 * 109.42367 * 58.75582 * 11 10 9 38 38 H 1.09006 * 109.47442 * 55.13246 * 12 11 10 39 39 H 1.09001 * 109.47043 * 175.12891 * 12 11 10 40 40 H 0.97001 * 119.99599 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.50186 * 301.42491 * 21 11 10 42 42 H 1.09004 * 109.52060 * 181.34332 * 21 11 10 43 43 H 1.09010 * 109.58451 * 353.37613 * 22 8 6 44 44 H 1.08999 * 109.58904 * 113.65827 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1731 -1.4291 2.1905 7 8 3.5644 -1.9652 3.0963 8 7 5.5208 -1.4376 2.1866 9 6 6.2693 -1.9891 3.3244 10 6 7.2529 -3.0434 2.8069 11 6 8.1314 -2.4191 1.7159 12 6 9.1386 -3.4576 1.2178 13 6 10.0821 -3.8191 2.3359 14 1 9.9745 -3.3542 3.3048 15 6 11.0834 -4.7424 2.1217 16 7 11.2147 -5.3080 0.9417 17 14 12.2533 -5.1899 3.5074 18 1 11.6999 -6.3368 4.2715 19 1 13.5733 -5.5643 2.9394 20 1 12.4168 -4.0245 4.4132 21 6 7.2534 -1.9600 0.5496 22 6 6.2695 -0.8953 1.0447 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9565 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6055 -1.7199 1.2950 31 1 1.7516 -0.1585 2.1369 32 1 3.9824 -0.4627 0.4315 33 1 6.8185 -1.1900 3.8222 34 1 5.5766 -2.4501 4.0285 35 1 7.8792 -3.3909 3.6285 36 1 6.6988 -3.8845 2.3902 37 1 8.6661 -1.5629 2.1270 38 1 8.6070 -4.3503 0.8880 39 1 9.7052 -3.0433 0.3839 40 1 11.9194 -5.9574 0.7909 41 1 6.6995 -2.8113 0.1541 42 1 7.8815 -1.5383 -0.2352 43 1 5.5772 -0.6367 0.2434 44 1 6.8168 -0.0055 1.3560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521867310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:35 Heat of formation + Delta-G solvation = -57.769391 kcal Electronic energy + Delta-G solvation = -20970.195865 eV Core-core repulsion = 17921.394301 eV Total energy + Delta-G solvation = -3048.801565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25602 -37.76620 -36.60511 -34.06469 -33.24213 -31.97354 -30.60257 -28.14038 -27.52552 -26.10848 -24.46534 -22.69309 -21.86854 -20.72827 -20.01067 -19.07115 -17.84050 -16.42275 -16.17499 -15.72879 -15.18282 -14.57036 -14.49425 -14.24366 -13.88920 -13.60701 -13.34045 -13.11348 -13.02001 -12.83028 -12.57365 -12.31174 -12.09320 -11.86089 -11.44825 -11.24755 -11.18516 -11.03799 -10.99036 -10.74608 -10.66004 -10.40174 -10.17462 -9.89982 -9.61007 -9.25072 -9.08535 -8.95774 -8.34477 -8.20125 -5.99194 -4.00831 2.79641 3.32488 3.35618 3.39059 3.41779 3.97443 4.44491 4.46583 4.56139 4.70317 5.04278 5.21634 5.28812 5.33653 5.36180 5.37641 5.39290 5.48852 5.54509 5.62081 5.66263 5.70467 5.77613 5.84102 5.92040 5.97916 6.01402 6.12497 6.34877 6.41600 6.50997 6.52210 6.67383 6.99523 7.03872 7.11630 7.16658 7.67001 7.81829 8.00595 8.06556 8.43467 8.73650 9.05635 9.63053 11.12174 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.003374 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.324965 B = 8297.989258 C = 8585.109469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.143 3.857 5 N -0.750 5.750 6 C 0.706 3.294 7 O -0.597 6.597 8 N -0.623 5.623 9 C 0.126 3.874 10 C -0.118 4.118 11 C -0.080 4.080 12 C 0.028 3.972 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.130 4.130 22 C 0.114 3.886 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.394 0.606 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.206 12.975 -3.356 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.018 3.982 5 N -0.409 5.409 6 C 0.407 3.593 7 O -0.476 6.476 8 N -0.360 5.360 9 C 0.003 3.997 10 C -0.156 4.156 11 C -0.098 4.098 12 C -0.009 4.009 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.168 4.168 22 C -0.009 4.009 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.231 0.769 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.551 12.474 -2.765 21.709 hybrid contribution 1.051 -0.187 0.194 1.085 sum -16.500 12.287 -2.572 20.732 Atomic orbital electron populations 1.21751 0.94028 1.02247 1.02162 1.21370 0.96684 0.96699 0.98088 1.21864 1.01103 0.95559 1.02031 1.21229 0.78962 1.00448 0.97554 1.45314 1.07507 1.64011 1.24095 1.15844 0.81677 0.79275 0.82461 1.90881 1.67527 1.50852 1.38352 1.47350 1.03398 1.64290 1.20935 1.21653 0.94126 0.96648 0.87228 1.21963 0.96611 0.96930 1.00137 1.21230 0.95532 0.99506 0.93575 1.19123 0.92591 0.92930 0.96281 1.21245 1.13384 1.23134 0.97590 0.92560 1.25020 0.97706 0.96314 0.95461 1.69964 1.33181 1.28692 1.21765 0.86641 0.80449 0.78797 0.82394 1.20703 1.21329 1.19892 1.22026 0.97436 0.97937 0.99413 1.21674 0.94571 0.97128 0.87558 0.92323 0.92215 0.92278 0.90540 0.92639 0.92450 0.92395 0.91724 0.91867 0.76876 0.92150 0.89617 0.89787 0.92384 0.92353 0.96671 0.96671 0.93078 0.92029 0.91142 0.91682 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.11 -0.79 2.96 -90.62 -0.27 -1.06 16 3 C -0.15 -0.98 9.07 37.16 0.34 -0.64 16 4 C 0.14 1.46 5.07 -4.04 -0.02 1.44 16 5 N -0.75 -8.88 5.19 -65.23 -0.34 -9.21 16 6 C 0.71 11.25 8.29 -86.91 -0.72 10.53 16 7 O -0.60 -11.73 15.77 5.29 0.08 -11.65 16 8 N -0.62 -9.49 2.97 -178.49 -0.53 -10.02 16 9 C 0.13 2.05 6.43 -3.71 -0.02 2.03 16 10 C -0.12 -2.20 5.21 -26.45 -0.14 -2.34 16 11 C -0.08 -1.54 2.10 -90.42 -0.19 -1.73 16 12 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 13 C -0.52 -14.10 8.39 -34.44 -0.29 -14.39 16 14 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 21 C -0.13 -2.04 5.36 -26.61 -0.14 -2.19 16 22 C 0.11 1.46 6.39 -3.71 -0.02 1.44 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.37 7.18 -51.93 -0.37 0.00 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.39 3.79 5.14 -40.82 -0.21 3.58 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.47 6.99 -51.93 -0.36 1.11 16 35 H 0.08 1.66 6.93 -51.93 -0.36 1.30 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.65 5.65 -51.92 -0.29 0.36 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -32.15 343.98 -9.11 -41.27 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.87 Total: -0.66 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.36 Total: -5.40 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.13 Total: -45.24 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.15 -9.11 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521867310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.501 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds