Wall clock time and date at job start Mon Mar 30 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47406 * 120.00226 * 2 1 3 5 5 N 1.46498 * 109.46938 * 175.00212 * 4 2 1 6 6 C 1.34782 * 119.99675 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00071 * 4.97931 * 6 5 4 8 8 N 1.34774 * 119.99915 * 184.98301 * 6 5 4 9 9 C 1.46926 * 120.63121 * 174.77166 * 8 6 5 10 10 C 1.53195 * 108.89465 * 126.33965 * 9 8 6 11 11 C 1.53354 * 109.14570 * 54.57617 * 10 9 8 12 12 C 1.52998 * 109.41339 * 178.67370 * 11 10 9 13 13 C 1.50701 * 109.47671 * 295.12915 * 12 11 10 14 14 H 1.08004 * 119.99565 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00388 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99835 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47058 * 89.99862 * 17 15 13 19 19 H 1.48501 * 109.47118 * 209.99865 * 17 15 13 20 20 H 1.48503 * 109.47450 * 329.99994 * 17 15 13 21 21 C 1.53040 * 109.60905 * 298.70899 * 11 10 9 22 22 C 1.46926 * 120.63157 * 354.78914 * 8 6 5 23 23 H 1.08996 * 109.47343 * 299.99585 * 1 2 3 24 24 H 1.09001 * 109.47612 * 59.99779 * 1 2 3 25 25 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46748 * 240.00904 * 2 1 3 27 27 H 1.08999 * 109.47111 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47741 * 300.00466 * 3 2 1 29 29 H 1.09001 * 109.47221 * 60.00349 * 3 2 1 30 30 H 1.09007 * 109.46974 * 55.00285 * 4 2 1 31 31 H 1.08998 * 109.47220 * 295.00553 * 4 2 1 32 32 H 0.96993 * 120.00686 * 359.97438 * 5 4 2 33 33 H 1.08999 * 109.58363 * 246.19988 * 9 8 6 34 34 H 1.09002 * 109.58625 * 6.48116 * 9 8 6 35 35 H 1.08997 * 109.49623 * 174.65400 * 10 9 8 36 36 H 1.09002 * 109.49577 * 294.75334 * 10 9 8 37 37 H 1.08994 * 109.42367 * 58.75582 * 11 10 9 38 38 H 1.09006 * 109.47442 * 55.13246 * 12 11 10 39 39 H 1.09001 * 109.47043 * 175.12891 * 12 11 10 40 40 H 0.97001 * 119.99599 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.50186 * 301.42491 * 21 11 10 42 42 H 1.09004 * 109.52060 * 181.34332 * 21 11 10 43 43 H 1.09010 * 109.58451 * 353.37613 * 22 8 6 44 44 H 1.08999 * 109.58904 * 113.65827 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1731 -1.4291 2.1905 7 8 3.5644 -1.9652 3.0963 8 7 5.5208 -1.4376 2.1866 9 6 6.2693 -1.9891 3.3244 10 6 7.2529 -3.0434 2.8069 11 6 8.1314 -2.4191 1.7159 12 6 9.1386 -3.4576 1.2178 13 6 10.0821 -3.8191 2.3359 14 1 9.9745 -3.3542 3.3048 15 6 11.0834 -4.7424 2.1217 16 7 11.2147 -5.3080 0.9417 17 14 12.2533 -5.1899 3.5074 18 1 11.6999 -6.3368 4.2715 19 1 13.5733 -5.5643 2.9394 20 1 12.4168 -4.0245 4.4132 21 6 7.2534 -1.9600 0.5496 22 6 6.2695 -0.8953 1.0447 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9565 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6055 -1.7199 1.2950 31 1 1.7516 -0.1585 2.1369 32 1 3.9824 -0.4627 0.4315 33 1 6.8185 -1.1900 3.8222 34 1 5.5766 -2.4501 4.0285 35 1 7.8792 -3.3909 3.6285 36 1 6.6988 -3.8845 2.3902 37 1 8.6661 -1.5629 2.1270 38 1 8.6070 -4.3503 0.8880 39 1 9.7052 -3.0433 0.3839 40 1 11.9194 -5.9574 0.7909 41 1 6.6995 -2.8113 0.1541 42 1 7.8815 -1.5383 -0.2352 43 1 5.5772 -0.6367 0.2434 44 1 6.8168 -0.0055 1.3560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521867310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:34 Heat of formation + Delta-G solvation = -77.024393 kcal Electronic energy + Delta-G solvation = -20971.030825 eV Core-core repulsion = 17921.394301 eV Total energy + Delta-G solvation = -3049.636524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46819 -39.01095 -37.56217 -35.71932 -34.46462 -33.65588 -31.88453 -29.86299 -28.01894 -27.19177 -26.06484 -24.02762 -23.49074 -21.46894 -21.41657 -20.31709 -19.03575 -18.38537 -17.41749 -16.75696 -16.55422 -16.14145 -15.51704 -15.37779 -15.12833 -14.79716 -14.63823 -14.36192 -14.31472 -13.93861 -13.75096 -13.41679 -13.22760 -13.01976 -12.87802 -12.71226 -12.49743 -12.32448 -12.13320 -11.97293 -11.83887 -11.78903 -11.60953 -11.34039 -11.27601 -11.01663 -10.80170 -10.51618 -10.21139 -9.42847 -8.16586 -6.25385 1.40890 1.41540 1.52119 1.67889 2.12075 2.42683 2.94331 3.17228 3.79171 3.92501 3.97940 4.01592 4.09042 4.15061 4.23040 4.43563 4.53011 4.61631 4.67018 4.70915 4.78043 4.82536 4.86044 4.90882 4.99450 5.02284 5.06899 5.09746 5.24767 5.31214 5.34071 5.37642 5.40256 5.43630 5.54558 5.57235 5.62524 5.82028 5.90985 6.00099 6.30782 6.91440 6.96852 7.43144 7.54583 8.95285 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.003374 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.324965 B = 8297.989258 C = 8585.109469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.147 4.147 4 C 0.141 3.859 5 N -0.734 5.734 6 C 0.700 3.300 7 O -0.640 6.640 8 N -0.625 5.625 9 C 0.136 3.864 10 C -0.110 4.110 11 C -0.072 4.072 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.063 0.937 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.958 3.042 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.261 1.261 21 C -0.125 4.125 22 C 0.119 3.881 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.408 0.592 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.065 0.935 38 H -0.018 1.018 39 H -0.007 1.007 40 H 0.261 0.739 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 15.048 -3.470 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.017 3.983 5 N -0.392 5.392 6 C 0.401 3.599 7 O -0.522 6.522 8 N -0.362 5.362 9 C 0.012 3.988 10 C -0.149 4.149 11 C -0.091 4.091 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.081 0.919 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.783 3.217 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.163 4.163 22 C -0.003 4.003 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.247 0.753 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.000 1.000 39 H 0.011 0.989 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.059 14.585 -2.914 23.395 hybrid contribution 1.184 -0.859 0.187 1.475 sum -16.875 13.726 -2.727 21.922 Atomic orbital electron populations 1.21759 0.93220 1.02320 1.02850 1.21326 0.97261 0.96861 0.96477 1.21864 1.01148 0.94900 1.02546 1.21351 0.77908 1.00007 0.99053 1.45218 1.08091 1.62660 1.23273 1.16065 0.81784 0.79273 0.82746 1.90852 1.68391 1.52714 1.40232 1.47376 1.03416 1.64132 1.21239 1.21450 0.93384 0.96401 0.87526 1.21819 0.96634 0.97105 0.99305 1.21083 0.95015 0.97908 0.95095 1.19019 0.93143 0.93139 0.95112 1.21691 1.13597 1.22893 0.98409 0.91856 1.25933 0.99709 0.96414 0.97933 1.70099 1.34125 1.29539 1.23963 0.85553 0.78009 0.78824 0.79319 1.20284 1.21042 1.18501 1.21938 0.97583 0.98584 0.98176 1.21798 0.94548 0.96298 0.87667 0.92330 0.90841 0.92571 0.89852 0.92546 0.91109 0.92760 0.93201 0.92627 0.75308 0.90166 0.90749 0.91330 0.94514 0.91630 0.99971 0.98887 0.93034 0.93405 0.89870 0.88235 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.10 -1.22 2.96 -10.79 -0.03 -1.25 16 3 C -0.15 -1.52 9.07 71.98 0.65 -0.87 16 4 C 0.14 2.71 5.07 86.38 0.44 3.15 16 5 N -0.73 -15.86 5.19 -478.54 -2.48 -18.35 16 6 C 0.70 21.42 8.29 179.05 1.49 22.91 16 7 O -0.64 -25.09 15.77 -3.97 -0.06 -25.15 16 8 N -0.63 -17.93 2.97 -836.89 -2.49 -20.41 16 9 C 0.14 4.30 6.43 86.36 0.56 4.85 16 10 C -0.11 -4.14 5.21 30.78 0.16 -3.98 16 11 C -0.07 -2.78 2.10 -10.66 -0.02 -2.80 16 12 C 0.03 1.68 4.45 29.85 0.13 1.82 16 13 C -0.53 -29.26 8.39 25.60 0.21 -29.04 16 14 H 0.06 3.35 7.06 -2.91 -0.02 3.32 16 15 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 16 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 17 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 C -0.12 -3.74 5.36 30.67 0.16 -3.57 16 22 C 0.12 2.68 6.39 86.36 0.55 3.23 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 0.57 7.18 -2.39 -0.02 0.56 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.41 6.49 5.14 -92.71 -0.48 6.01 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.55 6.99 -2.39 -0.02 2.54 16 35 H 0.07 2.75 6.93 -2.39 -0.02 2.73 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.10 1.58 5.65 -2.38 -0.01 1.57 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.26 343.98 3.18 -68.09 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.48 Total: 12.39 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.42 Total: -6.09 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -4.69 Total: -95.58 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.26 3.18 -68.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521867310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.938 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds