Wall clock time and date at job start Mon Mar 30 2020 00:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46847 * 2 1 4 4 C 1.53001 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47514 * 54.99831 * 4 3 2 6 6 C 1.53000 * 109.46886 * 294.99397 * 4 3 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47317 * 59.99960 * 7 6 4 9 9 C 1.53005 * 109.47159 * 300.00546 * 8 7 6 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 7 11 11 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.46770 * 60.00000 * 10 9 8 13 13 C 1.46896 * 111.00042 * 85.00472 * 12 10 9 14 14 C 1.50700 * 109.47238 * 179.97438 * 13 12 10 15 15 O 1.21286 * 119.99998 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99763 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99668 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00423 * 359.97438 * 17 16 14 19 19 C 1.38956 * 120.00017 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00165 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99806 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47115 * 90.00539 * 21 19 17 23 23 H 1.48500 * 109.47156 * 210.00312 * 21 19 17 24 24 H 1.48500 * 109.47475 * 330.00252 * 21 19 17 25 25 H 1.08994 * 109.47239 * 299.99825 * 1 2 3 26 26 H 1.08995 * 109.46947 * 60.00844 * 1 2 3 27 27 H 1.09006 * 109.46733 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47704 * 239.99915 * 2 1 3 29 29 H 1.09003 * 109.47255 * 119.99127 * 2 1 3 30 30 H 1.08994 * 109.47037 * 59.99507 * 3 2 1 31 31 H 1.09003 * 109.46480 * 299.99602 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 6 4 3 33 33 H 1.09001 * 109.47194 * 60.00677 * 6 4 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47153 * 300.00319 * 7 6 4 36 36 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 38 38 H 1.09002 * 109.46935 * 299.99411 * 9 8 7 39 39 H 1.09001 * 109.46812 * 179.97438 * 9 8 7 40 40 H 1.00892 * 111.00131 * 321.04502 * 12 10 9 41 41 H 1.09007 * 109.46767 * 299.99781 * 13 12 10 42 42 H 1.09006 * 109.46983 * 59.99417 * 13 12 10 43 43 H 0.96997 * 120.00718 * 359.97438 * 16 14 13 44 44 H 0.97000 * 120.00012 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8426 6 6 4.0805 0.8329 1.3065 7 6 5.6104 0.8335 1.3062 8 6 6.1199 2.2707 1.1806 9 6 5.6093 2.8804 -0.1265 10 6 4.0793 2.8799 -0.1262 11 1 3.7157 3.3147 -1.0571 12 7 3.5897 3.6738 1.0087 13 6 3.5262 5.1005 0.6646 14 6 3.0202 5.8812 1.8502 15 8 2.7396 5.3056 2.8803 16 7 2.8796 7.2189 1.7659 17 6 2.4187 7.9290 2.8443 18 1 2.1680 7.4165 3.7613 19 6 2.2732 9.3082 2.7572 20 7 1.8319 9.9889 3.7910 21 14 2.7060 10.1947 1.1710 22 1 1.5063 10.2624 0.2985 23 1 3.1692 11.5706 1.4834 24 1 3.7868 9.4559 0.4700 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6765 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.7174 1.4222 2.1485 33 1 3.7172 -0.1909 1.3961 34 1 5.9742 0.3987 2.2371 35 1 5.9738 0.2444 0.4641 36 1 7.2099 2.2711 1.1799 37 1 5.7565 2.8598 2.0226 38 1 5.9727 2.2913 -0.9686 39 1 5.9719 3.9045 -0.2157 40 1 4.1600 3.5243 1.8274 41 1 4.5215 5.4537 0.3945 42 1 2.8496 5.2412 -0.1783 43 1 3.1043 7.6793 0.9422 44 1 1.7307 10.9517 3.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548488064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:42 Heat of formation + Delta-G solvation = -66.038744 kcal Electronic energy + Delta-G solvation = -21274.538539 eV Core-core repulsion = 18225.378388 eV Total energy + Delta-G solvation = -3049.160151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71979 -38.14379 -35.08764 -34.16862 -33.56945 -31.62876 -30.84128 -29.76041 -26.65600 -25.55922 -23.71179 -22.73662 -21.93380 -20.41626 -19.34888 -18.85540 -18.33874 -16.24487 -15.67040 -15.42207 -14.97909 -14.83999 -14.35350 -14.16522 -13.98607 -13.62538 -13.26067 -13.07045 -12.98044 -12.55766 -12.40981 -12.19264 -11.97133 -11.83582 -11.74670 -11.46333 -11.27180 -11.14663 -11.03627 -10.88849 -10.58181 -10.44869 -10.33049 -10.00983 -9.95200 -9.88131 -9.54391 -8.51871 -8.15643 -7.97798 -6.28807 -3.79904 3.03971 3.08461 3.16313 3.78693 4.11877 4.22791 4.61188 4.73191 4.77391 4.97878 5.04099 5.08238 5.22143 5.23488 5.24982 5.36247 5.45372 5.50454 5.53504 5.62719 5.65200 5.73732 5.79866 5.86332 5.88721 5.94934 5.96896 6.00107 6.01543 6.09603 6.15710 6.19466 6.28324 6.33441 6.42902 6.51191 6.72873 7.25877 7.61665 7.72750 8.17730 8.63003 8.97942 9.45582 9.86716 10.84498 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.004381 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.310875 B = 6389.673260 C = 6986.576532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.069 4.069 5 H 0.063 0.937 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.123 4.123 9 C -0.151 4.151 10 C 0.090 3.910 11 H 0.074 0.926 12 N -0.658 5.658 13 C 0.047 3.953 14 C 0.451 3.549 15 O -0.564 6.564 16 N -0.592 5.592 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.883 5.883 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.351 0.649 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -16.870 -11.923 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.088 4.088 5 H 0.081 0.919 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.161 4.161 9 C -0.190 4.190 10 C -0.021 4.021 11 H 0.092 0.908 12 N -0.292 5.292 13 C -0.086 4.086 14 C 0.237 3.763 15 O -0.446 6.446 16 N -0.232 5.232 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.173 0.827 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.203 0.797 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.112 -17.154 -11.239 21.136 hybrid contribution 1.310 1.260 -1.273 2.219 sum 6.422 -15.895 -12.512 21.224 Atomic orbital electron populations 1.21770 0.96275 1.00953 1.01985 1.21600 0.95568 0.97794 1.01305 1.21545 0.94278 0.95555 1.03161 1.21079 0.95742 0.94494 0.97441 0.91858 1.21634 0.94532 1.00692 0.98657 1.21525 0.96412 0.96335 1.01235 1.21541 0.99997 0.96583 0.97940 1.22218 0.97715 1.00825 0.98248 1.21614 0.91657 0.94317 0.94471 0.90765 1.60260 1.57783 1.05161 1.06002 1.21740 0.99697 0.89268 0.97924 1.19762 0.84529 0.82424 0.89588 1.90558 1.53728 1.68910 1.31407 1.42216 1.60247 1.06335 1.14406 1.19433 1.39979 0.89941 0.93914 0.86319 1.25030 0.97539 0.96178 0.97421 1.69620 1.45327 1.07949 1.29395 0.86675 0.79001 0.80276 0.83441 1.19618 1.20233 1.19568 0.92501 0.93022 0.93370 0.92898 0.92084 0.89995 0.92769 0.90713 0.92214 0.92280 0.92496 0.92227 0.91610 0.91734 0.92174 0.82682 0.94033 0.89674 0.79746 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.26 5.69 -26.73 -0.15 -1.41 16 3 C -0.11 -1.25 4.45 -26.73 -0.12 -1.37 16 4 C -0.07 -0.74 2.01 -90.62 -0.18 -0.92 16 5 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 6 C -0.12 -1.27 4.72 -26.73 -0.13 -1.40 16 7 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 8 C -0.12 -1.31 5.67 -26.73 -0.15 -1.46 16 9 C -0.15 -1.60 5.52 -26.73 -0.15 -1.75 16 10 C 0.09 1.06 2.30 -67.71 -0.16 0.91 16 11 H 0.07 0.86 7.80 -51.93 -0.40 0.45 16 12 N -0.66 -10.04 4.72 -107.99 -0.51 -10.55 16 13 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 14 C 0.45 10.31 7.82 -10.99 -0.09 10.23 16 15 O -0.56 -15.20 15.78 5.55 0.09 -15.12 16 16 N -0.59 -14.25 5.09 -10.96 -0.06 -14.31 16 17 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 18 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -26.00 13.96 55.50 0.77 -25.22 16 21 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 30 H 0.08 1.18 7.76 -51.93 -0.40 0.77 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.97 7.21 -51.93 -0.37 0.60 16 33 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.81 6.26 -51.93 -0.32 0.49 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 40 H 0.35 5.71 5.26 -39.30 -0.21 5.51 16 41 H 0.04 0.62 7.43 -51.93 -0.39 0.24 16 42 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 43 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -31.03 336.89 -8.13 -39.16 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -7.61 Total: 12.81 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.19 Total: -6.68 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.21 Total: -50.09 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.03 -8.13 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.876 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds