Wall clock time and date at job start Mon Mar 30 2020 00:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46847 * 2 1 4 4 C 1.53001 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47514 * 54.99831 * 4 3 2 6 6 C 1.53000 * 109.46886 * 294.99397 * 4 3 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47317 * 59.99960 * 7 6 4 9 9 C 1.53005 * 109.47159 * 300.00546 * 8 7 6 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 7 11 11 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.46770 * 60.00000 * 10 9 8 13 13 C 1.46896 * 111.00042 * 85.00472 * 12 10 9 14 14 C 1.50700 * 109.47238 * 179.97438 * 13 12 10 15 15 O 1.21286 * 119.99998 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99763 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99668 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00423 * 359.97438 * 17 16 14 19 19 C 1.38956 * 120.00017 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00165 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99806 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47115 * 90.00539 * 21 19 17 23 23 H 1.48500 * 109.47156 * 210.00312 * 21 19 17 24 24 H 1.48500 * 109.47475 * 330.00252 * 21 19 17 25 25 H 1.08994 * 109.47239 * 299.99825 * 1 2 3 26 26 H 1.08995 * 109.46947 * 60.00844 * 1 2 3 27 27 H 1.09006 * 109.46733 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47704 * 239.99915 * 2 1 3 29 29 H 1.09003 * 109.47255 * 119.99127 * 2 1 3 30 30 H 1.08994 * 109.47037 * 59.99507 * 3 2 1 31 31 H 1.09003 * 109.46480 * 299.99602 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 6 4 3 33 33 H 1.09001 * 109.47194 * 60.00677 * 6 4 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47153 * 300.00319 * 7 6 4 36 36 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 38 38 H 1.09002 * 109.46935 * 299.99411 * 9 8 7 39 39 H 1.09001 * 109.46812 * 179.97438 * 9 8 7 40 40 H 1.00892 * 111.00131 * 321.04502 * 12 10 9 41 41 H 1.09007 * 109.46767 * 299.99781 * 13 12 10 42 42 H 1.09006 * 109.46983 * 59.99417 * 13 12 10 43 43 H 0.96997 * 120.00718 * 359.97438 * 16 14 13 44 44 H 0.97000 * 120.00012 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8426 6 6 4.0805 0.8329 1.3065 7 6 5.6104 0.8335 1.3062 8 6 6.1199 2.2707 1.1806 9 6 5.6093 2.8804 -0.1265 10 6 4.0793 2.8799 -0.1262 11 1 3.7157 3.3147 -1.0571 12 7 3.5897 3.6738 1.0087 13 6 3.5262 5.1005 0.6646 14 6 3.0202 5.8812 1.8502 15 8 2.7396 5.3056 2.8803 16 7 2.8796 7.2189 1.7659 17 6 2.4187 7.9290 2.8443 18 1 2.1680 7.4165 3.7613 19 6 2.2732 9.3082 2.7572 20 7 1.8319 9.9889 3.7910 21 14 2.7060 10.1947 1.1710 22 1 1.5063 10.2624 0.2985 23 1 3.1692 11.5706 1.4834 24 1 3.7868 9.4559 0.4700 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6765 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.7174 1.4222 2.1485 33 1 3.7172 -0.1909 1.3961 34 1 5.9742 0.3987 2.2371 35 1 5.9738 0.2444 0.4641 36 1 7.2099 2.2711 1.1799 37 1 5.7565 2.8598 2.0226 38 1 5.9727 2.2913 -0.9686 39 1 5.9719 3.9045 -0.2157 40 1 4.1600 3.5243 1.8274 41 1 4.5215 5.4537 0.3945 42 1 2.8496 5.2412 -0.1783 43 1 3.1043 7.6793 0.9422 44 1 1.7307 10.9517 3.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548488064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:41 Heat of formation + Delta-G solvation = -86.700629 kcal Electronic energy + Delta-G solvation = -21275.434505 eV Core-core repulsion = 18225.378388 eV Total energy + Delta-G solvation = -3050.056118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80837 -39.86481 -36.20018 -35.84575 -34.85023 -33.73356 -31.67882 -30.80827 -28.14108 -26.66628 -25.36797 -23.61953 -22.78370 -21.36364 -21.20521 -20.27964 -19.78925 -17.75668 -17.20785 -16.62534 -16.35650 -15.99087 -15.55649 -15.31673 -15.21767 -15.05102 -14.61551 -14.16848 -14.10240 -13.92775 -13.90119 -13.49590 -13.21290 -12.91812 -12.81655 -12.68954 -12.41848 -12.39392 -12.11033 -11.98158 -11.86850 -11.72652 -11.51725 -11.31448 -11.23129 -10.88093 -10.75127 -10.38868 -10.24788 -9.14178 -8.41625 -6.02383 1.29426 1.35199 1.43828 1.96399 2.22610 2.77853 3.14810 3.50165 3.75793 3.91215 3.93392 4.18255 4.20794 4.25430 4.39021 4.40241 4.43839 4.50561 4.55359 4.64104 4.70038 4.72093 4.82549 4.87002 4.98514 5.05831 5.12215 5.14791 5.18303 5.25727 5.31776 5.36743 5.43468 5.48634 5.53091 5.56520 5.63728 5.78566 5.92885 6.19370 6.50514 6.60515 6.88197 7.40030 7.97106 8.76237 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.004381 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.310875 B = 6389.673260 C = 6986.576532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.064 4.064 5 H 0.087 0.913 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.124 4.124 9 C -0.145 4.145 10 C 0.089 3.911 11 H 0.085 0.915 12 N -0.674 5.674 13 C 0.061 3.939 14 C 0.449 3.551 15 O -0.614 6.614 16 N -0.592 5.592 17 C -0.329 4.329 18 H 0.054 0.946 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.232 1.232 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.342 0.658 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.389 0.611 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 -17.627 -16.060 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.083 4.083 5 H 0.105 0.895 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.162 4.162 9 C -0.184 4.184 10 C -0.021 4.021 11 H 0.103 0.897 12 N -0.307 5.307 13 C -0.071 4.071 14 C 0.237 3.763 15 O -0.498 6.498 16 N -0.234 5.234 17 C -0.458 4.458 18 H 0.072 0.928 19 C -0.213 4.213 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.155 1.155 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.163 0.837 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.225 0.775 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.817 -17.937 -15.401 24.605 hybrid contribution 0.729 1.395 0.150 1.581 sum 7.546 -16.542 -15.251 23.731 Atomic orbital electron populations 1.21781 0.96426 1.01618 1.01275 1.21568 0.95455 0.96774 1.02048 1.21470 0.95112 0.96258 1.01332 1.21081 0.94922 0.94223 0.98037 0.89484 1.21587 0.95462 1.00590 0.97651 1.21498 0.95358 0.96078 1.02107 1.21545 1.00640 0.96725 0.97277 1.22169 0.96383 1.01120 0.98713 1.21743 0.92771 0.94243 0.93302 0.89658 1.60273 1.58675 1.04665 1.07132 1.21655 1.01279 0.89224 0.94955 1.21040 0.82379 0.82166 0.90728 1.90537 1.55269 1.69900 1.34113 1.42041 1.60644 1.06777 1.13920 1.19009 1.42295 0.90880 0.93638 0.92800 1.26112 0.96398 0.96436 1.02377 1.69804 1.46373 1.08705 1.32699 0.85358 0.80192 0.78458 0.77461 1.18144 1.19943 1.15544 0.94179 0.92786 0.92027 0.91102 0.92231 0.93620 0.92720 0.93879 0.91319 0.92257 0.90575 0.91116 0.94152 0.89513 0.92400 0.83680 0.91159 0.87127 0.77532 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.91 71.98 0.71 -2.19 16 2 C -0.12 -2.23 5.69 30.60 0.17 -2.06 16 3 C -0.10 -2.31 4.45 30.60 0.14 -2.17 16 4 C -0.06 -1.23 2.01 -10.79 -0.02 -1.25 16 5 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 6 C -0.12 -2.37 4.72 30.59 0.14 -2.22 16 7 C -0.11 -1.99 5.92 30.59 0.18 -1.81 16 8 C -0.12 -2.42 5.67 30.60 0.17 -2.25 16 9 C -0.14 -2.61 5.52 30.60 0.17 -2.44 16 10 C 0.09 1.88 2.30 44.91 0.10 1.98 16 11 H 0.09 1.65 7.80 -2.39 -0.02 1.63 16 12 N -0.67 -20.11 4.72 -495.57 -2.34 -22.45 16 13 C 0.06 1.93 5.96 85.56 0.51 2.44 16 14 C 0.45 20.77 7.82 87.66 0.69 21.45 16 15 O -0.61 -34.86 15.78 -3.05 -0.05 -34.91 16 16 N -0.59 -28.51 5.09 -306.99 -1.56 -30.07 16 17 C -0.33 -19.63 10.16 84.04 0.85 -18.77 16 18 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 19 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 20 N -0.94 -57.06 13.96 21.66 0.30 -56.76 16 21 Si 0.97 39.26 27.74 68.60 1.90 41.16 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.97 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.11 6.57 -2.39 -0.02 1.10 16 30 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.16 7.21 -2.39 -0.02 1.14 16 33 H 0.07 1.27 6.57 -2.39 -0.02 1.25 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.04 0.99 6.26 -2.39 -0.01 0.98 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.08 7.45 -2.39 -0.02 1.06 16 40 H 0.34 11.35 5.26 -89.70 -0.47 10.88 16 41 H 0.07 1.86 7.43 -2.38 -0.02 1.84 16 42 H 0.11 2.97 8.06 -2.38 -0.02 2.95 16 43 H 0.39 15.52 5.76 -92.71 -0.53 14.99 16 44 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.46 336.89 2.46 -71.00 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.09 Total: 41.68 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.29 Total: -9.65 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -3.60 Total: -109.28 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.05 Total: -34.91 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.90 Total: 41.16 kcal Total: -73.46 2.46 -71.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.705 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds