Wall clock time and date at job start Mon Mar 30 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52997 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47280 * 305.00193 * 4 3 2 6 6 C 1.53002 * 109.46978 * 65.00120 * 4 3 2 7 7 C 1.52997 * 109.46978 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47164 * 299.99874 * 7 6 4 9 9 C 1.52997 * 109.47127 * 59.99836 * 8 7 6 10 10 C 1.52996 * 109.46975 * 184.99658 * 4 3 2 11 11 H 1.09004 * 109.47368 * 60.00217 * 10 4 3 12 12 N 1.46905 * 109.47361 * 300.00280 * 10 4 3 13 13 C 1.46901 * 110.99811 * 154.99953 * 12 10 4 14 14 C 1.50703 * 109.46628 * 179.97438 * 13 12 10 15 15 O 1.21294 * 120.00287 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99763 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99844 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00112 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99567 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00630 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99717 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47154 * 119.99780 * 21 19 17 24 24 H 1.48502 * 109.47359 * 240.00017 * 21 19 17 25 25 H 1.09000 * 109.47459 * 60.00399 * 1 2 3 26 26 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47097 * 299.99745 * 1 2 3 28 28 H 1.09002 * 109.46840 * 239.99820 * 2 1 3 29 29 H 1.09002 * 109.47223 * 120.00074 * 2 1 3 30 30 H 1.08994 * 109.47001 * 59.99636 * 3 2 1 31 31 H 1.09000 * 109.46593 * 300.00131 * 3 2 1 32 32 H 1.09002 * 109.47097 * 299.99801 * 6 4 3 33 33 H 1.09001 * 109.47142 * 59.99766 * 6 4 3 34 34 H 1.09001 * 109.47375 * 59.99908 * 7 6 4 35 35 H 1.09000 * 109.47140 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.46505 * 299.99708 * 8 7 6 37 37 H 1.08996 * 109.46884 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47153 * 180.02562 * 9 8 7 39 39 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 40 40 H 1.00893 * 110.99515 * 278.95229 * 12 10 4 41 41 H 1.08998 * 109.47165 * 299.99557 * 13 12 10 42 42 H 1.08999 * 109.47212 * 59.99858 * 13 12 10 43 43 H 0.96998 * 120.00069 * 359.97438 * 16 14 13 44 44 H 0.97000 * 120.00837 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8532 0.8426 6 6 4.0805 0.8327 -1.3064 7 6 5.6105 0.8321 -1.3055 8 6 6.1210 2.2690 -1.1795 9 6 5.6104 2.8788 0.1275 10 6 4.0799 2.8795 0.1263 11 1 3.7162 3.3141 1.0575 12 7 3.5906 3.6738 -1.0086 13 6 3.5277 5.1005 -0.6644 14 6 3.0233 5.8815 -1.8504 15 8 2.7441 5.3063 -2.8812 16 7 2.8833 7.2194 -1.7661 17 6 2.4239 7.9298 -2.8450 18 1 2.1746 7.4175 -3.7624 19 6 2.2791 9.3090 -2.7578 20 7 2.5819 9.9323 -1.6413 21 14 1.6538 10.2772 -4.2279 22 1 1.3867 9.3480 -5.3552 23 1 0.4000 10.9823 -3.8593 24 1 2.6783 11.2708 -4.6383 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.7172 -0.1911 -1.3960 33 1 3.7175 1.4220 -2.1485 34 1 5.9731 0.2425 -0.4635 35 1 5.9742 0.3973 -2.2365 36 1 5.7584 2.8585 -2.0216 37 1 7.2109 2.2686 -1.1793 38 1 5.9737 3.9026 0.2171 39 1 5.9730 2.2892 0.9695 40 1 4.1611 3.5241 -1.8272 41 1 2.8509 5.2414 0.1783 42 1 4.5229 5.4533 -0.3941 43 1 3.1068 7.6794 -0.9420 44 1 2.4805 10.8951 -1.5804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548488065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:44 Heat of formation + Delta-G solvation = -73.325248 kcal Electronic energy + Delta-G solvation = -21219.680730 eV Core-core repulsion = 18170.204613 eV Total energy + Delta-G solvation = -3049.476117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.64109 -37.94759 -35.03647 -34.10762 -33.48446 -31.18546 -30.79446 -29.65331 -26.50709 -25.49311 -23.86779 -22.70520 -21.88455 -20.37795 -19.21469 -18.79414 -17.86291 -16.23883 -15.57905 -15.36646 -14.90751 -14.56651 -14.34840 -14.03845 -13.86909 -13.81010 -13.22999 -13.17823 -12.94427 -12.46745 -12.20780 -11.94093 -11.77168 -11.72509 -11.50610 -11.35775 -11.22690 -11.04710 -10.99700 -10.83924 -10.40738 -10.32608 -10.28543 -10.19326 -9.95124 -9.83265 -9.48726 -8.37851 -7.94614 -7.86274 -6.38852 -3.79406 3.18215 3.28482 3.35920 3.95896 4.15628 4.44524 4.66522 4.80052 4.84642 5.07711 5.11920 5.21391 5.26900 5.27701 5.30127 5.41083 5.51180 5.56515 5.59158 5.68403 5.72415 5.84931 5.86532 5.90267 5.99032 6.01519 6.03463 6.09357 6.13245 6.20298 6.22196 6.31661 6.34177 6.39117 6.46982 6.55794 6.77377 7.38914 7.58109 7.82306 8.10439 8.65154 9.21386 9.58510 10.10231 10.79113 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.004137 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.619060 B = 6766.105880 C = 7431.429576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.069 4.069 5 H 0.063 0.937 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.123 4.123 9 C -0.151 4.151 10 C 0.090 3.910 11 H 0.074 0.926 12 N -0.658 5.658 13 C 0.049 3.951 14 C 0.442 3.558 15 O -0.583 6.583 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.349 0.651 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.392 0.608 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -16.385 6.666 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.088 4.088 5 H 0.081 0.919 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.190 4.190 10 C -0.021 4.021 11 H 0.092 0.908 12 N -0.292 5.292 13 C -0.083 4.083 14 C 0.228 3.772 15 O -0.467 6.467 16 N -0.203 5.203 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.171 0.829 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.225 0.775 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.291 -16.672 6.131 18.066 hybrid contribution 0.848 1.218 -0.045 1.485 sum 4.139 -15.454 6.085 17.117 Atomic orbital electron populations 1.21769 0.96307 1.00911 1.01981 1.21601 0.95538 0.97844 1.01282 1.21538 0.94322 0.95479 1.03176 1.21079 0.95709 0.94610 0.97369 0.91905 1.21631 0.94533 1.00613 0.98704 1.21527 0.96416 0.96379 1.01171 1.21535 0.99948 0.96530 0.98016 1.22223 0.97774 1.00862 0.98136 1.21617 0.91610 0.94239 0.94602 0.90777 1.60272 1.57617 1.05428 1.05859 1.21702 0.99659 0.88920 0.98055 1.19869 0.84925 0.82937 0.89488 1.90517 1.55247 1.69350 1.31601 1.41880 1.57968 1.05166 1.15246 1.19750 1.39768 0.89293 0.93898 0.87917 1.25248 0.97748 0.96876 0.98111 1.69617 1.48933 1.10030 1.25866 0.85815 0.78231 0.79338 0.81051 1.19235 1.20764 1.20812 0.92539 0.93399 0.93000 0.92121 0.92894 0.92740 0.90032 0.92286 0.90743 0.92505 0.92347 0.91640 0.92271 0.92108 0.91788 0.82861 0.89814 0.94149 0.77516 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.13 -1.30 5.69 -26.73 -0.15 -1.45 16 3 C -0.11 -1.30 4.45 -26.73 -0.12 -1.42 16 4 C -0.07 -0.78 2.01 -90.62 -0.18 -0.96 16 5 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.12 -1.32 4.72 -26.73 -0.13 -1.45 16 7 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 8 C -0.12 -1.37 5.67 -26.73 -0.15 -1.52 16 9 C -0.15 -1.71 5.52 -26.71 -0.15 -1.86 16 10 C 0.09 1.13 2.30 -67.68 -0.16 0.98 16 11 H 0.07 0.93 7.80 -51.93 -0.40 0.52 16 12 N -0.66 -10.57 4.72 -107.96 -0.51 -11.08 16 13 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 14 C 0.44 10.55 7.82 -10.98 -0.09 10.47 16 15 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 16 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 21 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 32 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 33 H 0.07 1.00 7.21 -51.93 -0.37 0.63 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.85 6.26 -51.93 -0.33 0.52 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.73 7.46 -51.93 -0.39 0.34 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.35 5.94 5.27 -39.30 -0.21 5.74 16 41 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 42 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 43 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -29.81 340.03 -8.48 -38.30 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -7.65 Total: 12.91 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -1.18 Total: -6.96 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.16 Total: -49.75 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.09 Total: -15.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.81 -8.48 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.027 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds