Wall clock time and date at job start Mon Mar 30 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52997 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47280 * 305.00193 * 4 3 2 6 6 C 1.53002 * 109.46978 * 65.00120 * 4 3 2 7 7 C 1.52997 * 109.46978 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47164 * 299.99874 * 7 6 4 9 9 C 1.52997 * 109.47127 * 59.99836 * 8 7 6 10 10 C 1.52996 * 109.46975 * 184.99658 * 4 3 2 11 11 H 1.09004 * 109.47368 * 60.00217 * 10 4 3 12 12 N 1.46905 * 109.47361 * 300.00280 * 10 4 3 13 13 C 1.46901 * 110.99811 * 154.99953 * 12 10 4 14 14 C 1.50703 * 109.46628 * 179.97438 * 13 12 10 15 15 O 1.21294 * 120.00287 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99763 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99844 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00112 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99567 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00630 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99717 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47154 * 119.99780 * 21 19 17 24 24 H 1.48502 * 109.47359 * 240.00017 * 21 19 17 25 25 H 1.09000 * 109.47459 * 60.00399 * 1 2 3 26 26 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47097 * 299.99745 * 1 2 3 28 28 H 1.09002 * 109.46840 * 239.99820 * 2 1 3 29 29 H 1.09002 * 109.47223 * 120.00074 * 2 1 3 30 30 H 1.08994 * 109.47001 * 59.99636 * 3 2 1 31 31 H 1.09000 * 109.46593 * 300.00131 * 3 2 1 32 32 H 1.09002 * 109.47097 * 299.99801 * 6 4 3 33 33 H 1.09001 * 109.47142 * 59.99766 * 6 4 3 34 34 H 1.09001 * 109.47375 * 59.99908 * 7 6 4 35 35 H 1.09000 * 109.47140 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.46505 * 299.99708 * 8 7 6 37 37 H 1.08996 * 109.46884 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47153 * 180.02562 * 9 8 7 39 39 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 40 40 H 1.00893 * 110.99515 * 278.95229 * 12 10 4 41 41 H 1.08998 * 109.47165 * 299.99557 * 13 12 10 42 42 H 1.08999 * 109.47212 * 59.99858 * 13 12 10 43 43 H 0.96998 * 120.00069 * 359.97438 * 16 14 13 44 44 H 0.97000 * 120.00837 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8532 0.8426 6 6 4.0805 0.8327 -1.3064 7 6 5.6105 0.8321 -1.3055 8 6 6.1210 2.2690 -1.1795 9 6 5.6104 2.8788 0.1275 10 6 4.0799 2.8795 0.1263 11 1 3.7162 3.3141 1.0575 12 7 3.5906 3.6738 -1.0086 13 6 3.5277 5.1005 -0.6644 14 6 3.0233 5.8815 -1.8504 15 8 2.7441 5.3063 -2.8812 16 7 2.8833 7.2194 -1.7661 17 6 2.4239 7.9298 -2.8450 18 1 2.1746 7.4175 -3.7624 19 6 2.2791 9.3090 -2.7578 20 7 2.5819 9.9323 -1.6413 21 14 1.6538 10.2772 -4.2279 22 1 1.3867 9.3480 -5.3552 23 1 0.4000 10.9823 -3.8593 24 1 2.6783 11.2708 -4.6383 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.7172 -0.1911 -1.3960 33 1 3.7175 1.4220 -2.1485 34 1 5.9731 0.2425 -0.4635 35 1 5.9742 0.3973 -2.2365 36 1 5.7584 2.8585 -2.0216 37 1 7.2109 2.2686 -1.1793 38 1 5.9737 3.9026 0.2171 39 1 5.9730 2.2892 0.9695 40 1 4.1611 3.5241 -1.8272 41 1 2.8509 5.2414 0.1783 42 1 4.5229 5.4533 -0.3941 43 1 3.1068 7.6794 -0.9420 44 1 2.4805 10.8951 -1.5804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548488065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:44 Heat of formation + Delta-G solvation = -91.593623 kcal Electronic energy + Delta-G solvation = -21220.472906 eV Core-core repulsion = 18170.204613 eV Total energy + Delta-G solvation = -3050.268294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76547 -39.75253 -36.17860 -35.82568 -34.82655 -33.25139 -31.67964 -30.76793 -28.02984 -26.69215 -25.54462 -23.62863 -22.78483 -21.33713 -21.03994 -19.93646 -19.77720 -17.79673 -17.12083 -16.47406 -16.32707 -15.97834 -15.80079 -15.33737 -15.17471 -15.15851 -14.49523 -14.09583 -13.92403 -13.87240 -13.56463 -13.45525 -13.17439 -12.89192 -12.81959 -12.69333 -12.42873 -12.38008 -12.12749 -12.10101 -11.87085 -11.73247 -11.51718 -11.31755 -11.23261 -10.88183 -10.75394 -10.30653 -10.01554 -9.14447 -8.47087 -5.95820 1.36003 1.41006 1.55421 2.05509 2.29010 2.99394 3.20218 3.58941 3.75253 3.91314 3.93321 4.20020 4.24971 4.32785 4.39235 4.40609 4.46467 4.51706 4.56542 4.64323 4.69435 4.71871 4.82492 4.86430 4.97968 5.05562 5.11819 5.14814 5.18077 5.25506 5.31023 5.36552 5.40652 5.43222 5.48591 5.56098 5.63488 5.77734 5.94906 6.21742 6.52253 6.60395 7.12567 7.56305 8.11880 8.70690 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.004137 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.619060 B = 6766.105880 C = 7431.429576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.064 4.064 5 H 0.086 0.914 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.123 4.123 9 C -0.145 4.145 10 C 0.088 3.912 11 H 0.079 0.921 12 N -0.669 5.669 13 C 0.065 3.935 14 C 0.439 3.561 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.342 0.658 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -17.283 7.987 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.082 4.082 5 H 0.105 0.895 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.161 4.161 9 C -0.184 4.184 10 C -0.022 4.022 11 H 0.097 0.903 12 N -0.302 5.302 13 C -0.068 4.068 14 C 0.226 3.774 15 O -0.509 6.509 16 N -0.212 5.212 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.195 1.195 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.163 0.837 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.229 0.771 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.031 -17.571 7.488 19.521 hybrid contribution 0.615 1.457 -0.444 1.642 sum 4.646 -16.114 7.044 18.190 Atomic orbital electron populations 1.21779 0.96377 1.01660 1.01264 1.21564 0.95497 0.96603 1.02118 1.21464 0.95086 0.96373 1.01247 1.21077 0.94964 0.94000 0.98196 0.89534 1.21586 0.95457 1.00658 0.97515 1.21500 0.95359 0.95906 1.02215 1.21537 1.00642 0.96839 0.97079 1.22172 0.96422 1.00915 0.98915 1.21749 0.92774 0.94403 0.93239 0.90260 1.60288 1.58445 1.04490 1.07010 1.21547 1.00574 0.89347 0.95298 1.20923 0.83292 0.82559 0.90612 1.90485 1.56605 1.70030 1.33790 1.41946 1.58443 1.05895 1.14879 1.19698 1.42115 0.90299 0.94162 0.90445 1.26031 0.97223 0.97114 1.00853 1.69675 1.48750 1.10662 1.27130 0.84876 0.78212 0.77763 0.77506 1.19870 1.19556 1.19506 0.94085 0.91912 0.92925 0.92024 0.91144 0.93025 0.93555 0.91100 0.93759 0.90574 0.91999 0.94132 0.91080 0.92849 0.89526 0.83679 0.88232 0.92200 0.77051 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.12 -2.31 5.69 30.59 0.17 -2.13 16 3 C -0.10 -2.45 4.45 30.59 0.14 -2.31 16 4 C -0.06 -1.33 2.01 -10.80 -0.02 -1.35 16 5 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.11 -2.44 4.72 30.59 0.14 -2.29 16 7 C -0.11 -2.07 5.92 30.60 0.18 -1.88 16 8 C -0.12 -2.58 5.67 30.60 0.17 -2.41 16 9 C -0.15 -2.97 5.52 30.61 0.17 -2.80 16 10 C 0.09 2.08 2.30 44.93 0.10 2.19 16 11 H 0.08 1.81 7.80 -2.39 -0.02 1.79 16 12 N -0.67 -21.59 4.72 -495.47 -2.34 -23.93 16 13 C 0.06 2.31 5.97 85.56 0.51 2.82 16 14 C 0.44 21.50 7.82 87.66 0.69 22.18 16 15 O -0.62 -35.46 15.78 -3.07 -0.05 -35.51 16 16 N -0.57 -30.22 5.29 -306.98 -1.62 -31.84 16 17 C -0.33 -19.33 9.68 84.04 0.81 -18.51 16 18 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 20 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 21 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.17 6.57 -2.39 -0.02 1.15 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.42 7.76 -2.39 -0.02 1.40 16 32 H 0.07 1.33 6.57 -2.39 -0.02 1.32 16 33 H 0.04 1.21 7.21 -2.39 -0.02 1.20 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 1.05 6.26 -2.39 -0.01 1.04 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.18 7.46 -2.39 -0.02 1.16 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.34 11.98 5.27 -89.70 -0.47 11.51 16 41 H 0.10 3.25 8.05 -2.39 -0.02 3.23 16 42 H 0.06 1.92 7.44 -2.39 -0.02 1.90 16 43 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 44 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -65.36 340.03 2.32 -63.03 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.22 Total: 41.72 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 4.25 Total: -8.98 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.68 Total: -105.88 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.05 Total: -35.51 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -65.36 2.32 -63.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.560 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds