Wall clock time and date at job start Mon Mar 30 2020 00:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47493 * 2 1 4 4 C 1.52995 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47112 * 304.99851 * 4 3 2 6 6 C 1.52997 * 109.47373 * 64.99661 * 4 3 2 7 7 C 1.53004 * 109.47246 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47032 * 300.00489 * 7 6 4 9 9 C 1.52997 * 109.47505 * 59.99669 * 8 7 6 10 10 C 1.52999 * 109.47170 * 184.99875 * 4 3 2 11 11 H 1.08996 * 109.47409 * 299.99676 * 10 4 3 12 12 N 1.46901 * 109.47056 * 59.99889 * 10 4 3 13 13 C 1.46902 * 110.99984 * 205.00303 * 12 10 4 14 14 C 1.50706 * 109.46971 * 179.97438 * 13 12 10 15 15 O 1.21290 * 119.99841 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99701 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99872 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99710 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99814 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99693 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00141 * 359.73267 * 19 17 16 22 22 H 1.48502 * 109.46967 * 270.27331 * 21 19 17 23 23 H 1.48505 * 109.47170 * 30.26803 * 21 19 17 24 24 H 1.48498 * 109.47513 * 150.27417 * 21 19 17 25 25 H 1.09000 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47046 * 300.00093 * 1 2 3 27 27 H 1.09000 * 109.47125 * 59.99866 * 1 2 3 28 28 H 1.09002 * 109.47046 * 239.99907 * 2 1 3 29 29 H 1.09000 * 109.47125 * 120.00134 * 2 1 3 30 30 H 1.08992 * 109.47108 * 59.99881 * 3 2 1 31 31 H 1.09000 * 109.47045 * 300.00184 * 3 2 1 32 32 H 1.08996 * 109.46944 * 60.00485 * 6 4 3 33 33 H 1.09001 * 109.47385 * 299.99861 * 6 4 3 34 34 H 1.09000 * 109.47381 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46945 * 59.99770 * 7 6 4 36 36 H 1.09005 * 109.46668 * 299.99450 * 8 7 6 37 37 H 1.09001 * 109.46972 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47524 * 180.02562 * 9 8 7 39 39 H 1.09001 * 109.46847 * 60.00205 * 9 8 7 40 40 H 1.00907 * 111.00169 * 328.95644 * 12 10 4 41 41 H 1.08991 * 109.47190 * 59.99828 * 13 12 10 42 42 H 1.09001 * 109.46767 * 299.99474 * 13 12 10 43 43 H 0.97004 * 120.00018 * 0.02562 * 16 14 13 44 44 H 0.96999 * 119.99859 * 179.72933 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 5.6095 0.8324 -1.3086 8 6 6.1201 2.2692 -1.1825 9 6 5.6106 2.8787 0.1251 10 6 4.0801 2.8795 0.1250 11 1 3.7165 3.4690 -0.7165 12 7 3.5909 3.4646 1.3806 13 6 3.5281 4.9295 1.2893 14 6 3.0225 5.4927 2.5925 15 8 2.7427 4.7472 3.5074 16 7 2.8824 6.8248 2.7416 17 6 2.4220 7.3372 3.9271 18 1 2.1720 6.6734 4.7414 19 6 2.2781 8.7107 4.0810 20 7 1.8373 9.2019 5.2174 21 14 2.7190 9.8594 2.6755 22 1 4.1500 10.2422 2.7794 23 1 2.4836 9.1707 1.3809 24 1 1.8740 11.0783 2.7486 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.7159 1.4226 -2.1498 33 1 3.7161 -0.1908 -1.3978 34 1 5.9725 0.3977 -2.2399 35 1 5.9728 0.2426 -0.4669 36 1 5.7568 2.8590 -2.0241 37 1 7.2101 2.2687 -1.1823 38 1 5.9739 3.9023 0.2147 39 1 5.9739 2.2889 0.9667 40 1 2.6933 3.0793 1.6336 41 1 2.8514 5.2146 0.4838 42 1 4.5234 5.3237 1.0844 43 1 3.1067 7.4210 2.0100 44 1 1.7405 10.1609 5.3262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548488066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:47 Heat of formation + Delta-G solvation = -67.509969 kcal Electronic energy + Delta-G solvation = -21016.982183 eV Core-core repulsion = 17967.758235 eV Total energy + Delta-G solvation = -3049.223948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.58499 -38.19453 -35.02222 -34.67335 -33.77541 -31.63733 -30.93288 -29.64005 -26.63304 -25.76530 -23.89428 -22.58248 -21.30878 -20.60147 -19.87404 -19.28313 -18.26931 -16.33903 -15.52538 -15.30275 -15.10831 -14.90645 -14.51996 -14.26087 -14.09837 -13.77541 -13.30579 -13.21143 -12.81740 -12.68021 -12.60748 -12.19737 -12.02062 -11.86402 -11.79532 -11.45933 -11.27373 -11.20871 -11.10571 -10.96260 -10.73917 -10.57800 -10.49425 -10.16311 -9.95158 -9.90226 -9.54560 -8.51698 -8.16028 -8.04809 -6.28817 -3.79979 3.04085 3.08719 3.16399 3.78044 4.11024 4.14442 4.51114 4.59307 4.74060 4.83794 4.90232 5.05658 5.10679 5.15897 5.23108 5.30639 5.38717 5.44663 5.45369 5.52904 5.57514 5.66872 5.69943 5.74493 5.78578 5.85679 5.90823 5.95773 5.97418 6.00223 6.06989 6.10349 6.17394 6.24910 6.27540 6.29751 6.45961 7.25119 7.61513 7.71192 8.17525 8.62895 8.97731 9.45361 9.86375 10.84462 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021238 B = 0.004180 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.104400 B = 6697.024575 C = 7532.308398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.088 4.088 5 H 0.080 0.920 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.108 4.108 10 C 0.093 3.907 11 H 0.040 0.960 12 N -0.667 5.667 13 C 0.048 3.952 14 C 0.451 3.549 15 O -0.564 6.564 16 N -0.592 5.592 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.277 1.277 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.351 0.649 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.466 -14.791 -17.259 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.106 4.106 5 H 0.098 0.902 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.017 4.017 11 H 0.057 0.943 12 N -0.302 5.302 13 C -0.085 4.085 14 C 0.237 3.763 15 O -0.446 6.446 16 N -0.232 5.232 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.202 1.202 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.174 0.826 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.203 0.797 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.807 -15.104 -16.177 22.648 hybrid contribution -0.475 1.365 -1.577 2.139 sum 4.332 -13.739 -17.754 22.863 Atomic orbital electron populations 1.21791 0.96059 1.01357 1.01969 1.21534 0.95674 0.96796 1.01921 1.21752 0.95046 0.97128 1.02150 1.21308 0.94787 0.96032 0.98504 0.90181 1.21599 0.95420 1.00724 0.97188 1.21546 0.95701 0.97009 1.01460 1.21542 1.00085 0.96050 0.98011 1.21552 0.94726 1.01105 0.97276 1.21543 0.95371 0.94126 0.90641 0.94256 1.60150 1.35173 1.03696 1.31149 1.21745 1.01132 0.89460 0.96129 1.19756 0.84365 0.82689 0.89538 1.90559 1.53764 1.58000 1.42281 1.42216 1.60285 1.05752 1.14910 1.19440 1.40166 0.92222 0.91474 0.86303 1.25032 0.97507 0.96719 0.96904 1.69624 1.45318 1.13447 1.23872 0.86673 0.79347 0.81450 0.81924 1.19593 1.19560 1.20209 0.92995 0.92481 0.92963 0.92056 0.91920 0.91364 0.92214 0.92218 0.91726 0.92377 0.91909 0.92344 0.92092 0.92098 0.91148 0.82646 0.93996 0.89623 0.79724 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.15 0.37 -1.02 16 2 C -0.12 -1.12 5.69 -26.73 -0.15 -1.27 16 3 C -0.12 -1.29 4.55 -26.73 -0.12 -1.41 16 4 C -0.09 -0.93 1.85 -90.62 -0.17 -1.09 16 5 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.11 -0.98 4.96 -26.73 -0.13 -1.11 16 7 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 8 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 9 C -0.11 -1.26 5.43 -26.71 -0.14 -1.41 16 10 C 0.09 1.15 1.98 -67.68 -0.13 1.02 16 11 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 12 N -0.67 -10.71 5.93 -107.96 -0.64 -11.35 16 13 C 0.05 0.83 5.97 -4.97 -0.03 0.80 16 14 C 0.45 10.49 7.82 -10.98 -0.09 10.41 16 15 O -0.56 -15.47 15.78 5.55 0.09 -15.38 16 16 N -0.59 -14.40 5.09 -10.96 -0.06 -14.45 16 17 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 18 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 21 Si 0.88 19.62 27.74 -169.99 -4.71 14.90 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.84 6.03 -51.93 -0.31 0.52 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.35 5.86 5.80 -39.29 -0.23 5.64 16 41 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 42 H 0.09 1.34 7.44 -51.93 -0.39 0.96 16 43 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -31.63 339.76 -8.28 -39.91 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -7.68 Total: 11.91 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.16 Total: -5.38 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.08 Total: -51.08 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.38 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.63 -8.28 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.601 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds