Wall clock time and date at job start Mon Mar 30 2020 00:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47493 * 2 1 4 4 C 1.52995 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47112 * 304.99851 * 4 3 2 6 6 C 1.52997 * 109.47373 * 64.99661 * 4 3 2 7 7 C 1.53004 * 109.47246 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47032 * 300.00489 * 7 6 4 9 9 C 1.52997 * 109.47505 * 59.99669 * 8 7 6 10 10 C 1.52999 * 109.47170 * 184.99875 * 4 3 2 11 11 H 1.08996 * 109.47409 * 299.99676 * 10 4 3 12 12 N 1.46901 * 109.47056 * 59.99889 * 10 4 3 13 13 C 1.46902 * 110.99984 * 205.00303 * 12 10 4 14 14 C 1.50706 * 109.46971 * 179.97438 * 13 12 10 15 15 O 1.21290 * 119.99841 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99701 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99872 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99710 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99814 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99693 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00141 * 359.73267 * 19 17 16 22 22 H 1.48502 * 109.46967 * 270.27331 * 21 19 17 23 23 H 1.48505 * 109.47170 * 30.26803 * 21 19 17 24 24 H 1.48498 * 109.47513 * 150.27417 * 21 19 17 25 25 H 1.09000 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47046 * 300.00093 * 1 2 3 27 27 H 1.09000 * 109.47125 * 59.99866 * 1 2 3 28 28 H 1.09002 * 109.47046 * 239.99907 * 2 1 3 29 29 H 1.09000 * 109.47125 * 120.00134 * 2 1 3 30 30 H 1.08992 * 109.47108 * 59.99881 * 3 2 1 31 31 H 1.09000 * 109.47045 * 300.00184 * 3 2 1 32 32 H 1.08996 * 109.46944 * 60.00485 * 6 4 3 33 33 H 1.09001 * 109.47385 * 299.99861 * 6 4 3 34 34 H 1.09000 * 109.47381 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46945 * 59.99770 * 7 6 4 36 36 H 1.09005 * 109.46668 * 299.99450 * 8 7 6 37 37 H 1.09001 * 109.46972 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47524 * 180.02562 * 9 8 7 39 39 H 1.09001 * 109.46847 * 60.00205 * 9 8 7 40 40 H 1.00907 * 111.00169 * 328.95644 * 12 10 4 41 41 H 1.08991 * 109.47190 * 59.99828 * 13 12 10 42 42 H 1.09001 * 109.46767 * 299.99474 * 13 12 10 43 43 H 0.97004 * 120.00018 * 0.02562 * 16 14 13 44 44 H 0.96999 * 119.99859 * 179.72933 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 5.6095 0.8324 -1.3086 8 6 6.1201 2.2692 -1.1825 9 6 5.6106 2.8787 0.1251 10 6 4.0801 2.8795 0.1250 11 1 3.7165 3.4690 -0.7165 12 7 3.5909 3.4646 1.3806 13 6 3.5281 4.9295 1.2893 14 6 3.0225 5.4927 2.5925 15 8 2.7427 4.7472 3.5074 16 7 2.8824 6.8248 2.7416 17 6 2.4220 7.3372 3.9271 18 1 2.1720 6.6734 4.7414 19 6 2.2781 8.7107 4.0810 20 7 1.8373 9.2019 5.2174 21 14 2.7190 9.8594 2.6755 22 1 4.1500 10.2422 2.7794 23 1 2.4836 9.1707 1.3809 24 1 1.8740 11.0783 2.7486 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.7159 1.4226 -2.1498 33 1 3.7161 -0.1908 -1.3978 34 1 5.9725 0.3977 -2.2399 35 1 5.9728 0.2426 -0.4669 36 1 5.7568 2.8590 -2.0241 37 1 7.2101 2.2687 -1.1823 38 1 5.9739 3.9023 0.2147 39 1 5.9739 2.2889 0.9667 40 1 2.6933 3.0793 1.6336 41 1 2.8514 5.2146 0.4838 42 1 4.5234 5.3237 1.0844 43 1 3.1067 7.4210 2.0100 44 1 1.7405 10.1609 5.3262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548488066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:46 Heat of formation + Delta-G solvation = -89.117311 kcal Electronic energy + Delta-G solvation = -21017.919148 eV Core-core repulsion = 17967.758235 eV Total energy + Delta-G solvation = -3050.160913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69354 -39.88073 -36.23154 -35.80018 -35.45746 -33.75929 -31.72455 -30.71836 -28.06413 -26.77793 -25.53945 -23.46239 -22.17147 -21.44360 -21.29068 -20.72260 -20.16279 -17.89841 -17.07845 -16.58418 -16.23806 -16.10945 -15.81980 -15.39228 -15.10265 -14.93374 -14.80195 -14.43192 -14.17243 -13.99973 -13.73126 -13.46613 -13.22385 -13.09840 -12.91179 -12.68455 -12.42938 -12.22866 -12.07321 -11.98994 -11.94569 -11.76941 -11.53317 -11.48944 -11.31459 -10.97850 -10.72527 -10.42805 -10.26416 -9.29110 -8.42604 -6.03709 1.29071 1.34760 1.43547 1.93181 2.21968 2.71845 3.13391 3.37884 3.68396 3.81676 3.92245 4.14245 4.14961 4.30518 4.33680 4.37319 4.38773 4.44556 4.51434 4.59299 4.64103 4.66209 4.75878 4.81680 4.96120 4.98195 5.05345 5.14221 5.19769 5.23286 5.32071 5.35027 5.39665 5.43205 5.46934 5.49672 5.52864 5.63434 5.91097 6.14091 6.44447 6.58665 6.86225 7.37754 7.94253 8.75153 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021238 B = 0.004180 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.104400 B = 6697.024575 C = 7532.308398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.120 4.120 4 C -0.082 4.082 5 H 0.064 0.936 6 C -0.106 4.106 7 C -0.119 4.119 8 C -0.114 4.114 9 C -0.108 4.108 10 C 0.094 3.906 11 H 0.050 0.950 12 N -0.686 5.686 13 C 0.063 3.937 14 C 0.448 3.552 15 O -0.614 6.614 16 N -0.590 5.590 17 C -0.331 4.331 18 H 0.054 0.946 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.257 1.257 23 H -0.232 1.232 24 H -0.273 1.273 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.344 0.656 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.390 0.610 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 -14.625 -21.455 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.158 4.158 4 C -0.101 4.101 5 H 0.083 0.917 6 C -0.144 4.144 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.015 4.015 11 H 0.068 0.932 12 N -0.321 5.321 13 C -0.070 4.070 14 C 0.236 3.764 15 O -0.499 6.499 16 N -0.232 5.232 17 C -0.460 4.460 18 H 0.073 0.927 19 C -0.212 4.212 20 N -0.574 5.574 21 Si 0.785 3.215 22 H -0.181 1.181 23 H -0.156 1.156 24 H -0.198 1.198 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.165 0.835 41 H 0.090 0.910 42 H 0.128 0.872 43 H 0.225 0.775 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.967 -14.959 -20.400 25.991 hybrid contribution -0.857 1.214 -0.145 1.493 sum 5.109 -13.745 -20.545 25.242 Atomic orbital electron populations 1.21796 0.95982 1.01946 1.01501 1.21514 0.95728 0.95964 1.02388 1.21712 0.95050 0.97816 1.01217 1.21256 0.94717 0.94857 0.99280 0.91742 1.21573 0.95628 1.01284 0.95885 1.21551 0.95404 0.96504 1.02164 1.21513 1.00583 0.96429 0.96631 1.21554 0.94113 1.00735 0.98242 1.21660 0.95772 0.94982 0.89096 0.93163 1.60185 1.35014 1.03111 1.33755 1.21658 1.02580 0.90102 0.92633 1.20982 0.82296 0.81998 0.91111 1.90536 1.55366 1.59187 1.44781 1.42033 1.60554 1.06579 1.14033 1.19018 1.42549 0.92324 0.92088 0.92741 1.26116 0.96306 0.98231 1.00595 1.69805 1.46241 1.14424 1.26958 0.85363 0.79482 0.78104 0.78560 1.18107 1.15564 1.19823 0.91906 0.93978 0.92401 0.90354 0.92611 0.93805 0.91529 0.91430 0.90585 0.90600 0.92474 0.91439 0.91290 0.92662 0.92826 0.83451 0.91004 0.87247 0.77490 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.12 -2.03 5.69 30.59 0.17 -1.86 16 3 C -0.12 -2.40 4.55 30.59 0.14 -2.26 16 4 C -0.08 -1.62 1.85 -10.80 -0.02 -1.64 16 5 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 6 C -0.11 -1.54 4.96 30.59 0.15 -1.39 16 7 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 8 C -0.11 -1.77 5.92 30.59 0.18 -1.59 16 9 C -0.11 -2.33 5.43 30.61 0.17 -2.16 16 10 C 0.09 2.15 1.98 44.93 0.09 2.24 16 11 H 0.05 1.07 7.80 -2.39 -0.02 1.05 16 12 N -0.69 -21.63 5.93 -495.48 -2.94 -24.57 16 13 C 0.06 2.05 5.97 85.56 0.51 2.56 16 14 C 0.45 21.06 7.82 87.66 0.69 21.74 16 15 O -0.61 -35.29 15.78 -3.06 -0.05 -35.34 16 16 N -0.59 -28.66 5.09 -306.98 -1.56 -30.22 16 17 C -0.33 -19.79 10.16 84.04 0.85 -18.93 16 18 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 20 N -0.93 -56.93 13.96 21.66 0.30 -56.62 16 21 Si 0.97 39.27 27.74 68.60 1.90 41.17 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.09 6.56 -2.39 -0.02 1.07 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.09 6.03 -2.39 -0.01 1.08 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.96 6.56 -2.39 -0.02 0.94 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.23 7.45 -2.39 -0.02 1.22 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.34 11.68 5.80 -89.69 -0.52 11.16 16 41 H 0.07 1.96 8.05 -2.39 -0.02 1.95 16 42 H 0.11 3.10 7.44 -2.39 -0.02 3.09 16 43 H 0.39 15.66 5.76 -92.71 -0.53 15.13 16 44 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.85 339.76 1.81 -72.04 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.14 Total: 40.56 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 4.29 Total: -7.01 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -4.20 Total: -111.42 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.05 Total: -35.34 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal Total: -73.85 1.81 -72.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.082 kcal (2) G-P(sol) polarization free energy of solvation -73.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds