Wall clock time and date at job start Mon Mar 30 2020 00:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 C 1.53002 * 109.46975 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47067 * 54.99833 * 4 3 2 6 6 C 1.52997 * 109.47143 * 294.99816 * 4 3 2 7 7 C 1.53002 * 109.46817 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 4 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 12 12 N 1.46898 * 109.47548 * 179.97438 * 10 9 8 13 13 C 1.46900 * 111.00190 * 275.00196 * 12 10 9 14 14 C 1.50698 * 109.47212 * 179.97438 * 13 12 10 15 15 O 1.21295 * 119.99984 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00114 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00276 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00223 * 359.97438 * 17 16 14 19 19 C 1.38956 * 120.00210 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00008 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47154 * 60.00194 * 21 19 17 23 23 H 1.48501 * 109.47087 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47604 * 300.00094 * 21 19 17 25 25 H 1.09003 * 109.46432 * 60.00033 * 1 2 3 26 26 H 1.08993 * 109.47565 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47055 * 300.00570 * 1 2 3 28 28 H 1.08997 * 109.47047 * 239.99479 * 2 1 3 29 29 H 1.08999 * 109.47029 * 119.99558 * 2 1 3 30 30 H 1.08997 * 109.47507 * 59.99760 * 3 2 1 31 31 H 1.08999 * 109.46729 * 299.99742 * 3 2 1 32 32 H 1.08993 * 109.47194 * 59.99677 * 6 4 3 33 33 H 1.09002 * 109.46695 * 299.99691 * 6 4 3 34 34 H 1.08992 * 109.47063 * 299.99823 * 7 6 4 35 35 H 1.09004 * 109.46733 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 37 37 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 40 40 H 1.00896 * 110.99675 * 38.95895 * 12 10 9 41 41 H 1.09002 * 109.47391 * 299.99994 * 13 12 10 42 42 H 1.09005 * 109.46934 * 60.00097 * 13 12 10 43 43 H 0.97004 * 119.99984 * 0.02562 * 16 14 13 44 44 H 0.96997 * 119.99755 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 5.6095 0.8335 1.3091 8 6 6.1191 2.2707 1.1837 9 6 5.6097 2.8801 -0.1240 10 6 4.0797 2.8796 -0.1249 11 1 3.7157 3.4690 0.7167 12 7 3.5906 3.4653 -1.3802 13 6 3.5272 4.9300 -1.2882 14 6 3.0229 5.4939 -2.5916 15 8 2.7432 4.7488 -3.5069 16 7 2.8816 6.8259 -2.7398 17 6 2.4223 7.3389 -3.9253 18 1 2.1741 6.6755 -4.7407 19 6 2.2771 8.7123 -4.0783 20 7 2.5796 9.5195 -3.0864 21 14 1.6520 9.4112 -5.6939 22 1 0.2963 8.8737 -5.9741 23 1 1.5874 10.8918 -5.6007 24 1 2.5746 9.0236 -6.7910 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.7161 -0.1906 1.3979 33 1 3.7158 1.4227 2.1498 34 1 5.9735 0.2442 0.4676 35 1 5.9724 0.3998 2.2410 36 1 5.7551 2.8601 2.0253 37 1 7.2091 2.2711 1.1838 38 1 5.9730 3.9038 -0.2137 39 1 5.9737 2.2908 -0.9655 40 1 4.1612 3.1763 -2.1605 41 1 2.8503 5.2146 -0.4827 42 1 4.5224 5.3246 -1.0829 43 1 3.1049 7.4218 -2.0077 44 1 2.4786 10.4783 -3.1934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548488067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:49 Heat of formation + Delta-G solvation = -77.210093 kcal Electronic energy + Delta-G solvation = -20946.859085 eV Core-core repulsion = 17897.214508 eV Total energy + Delta-G solvation = -3049.644577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.43383 -37.99997 -34.97028 -34.47915 -33.70371 -31.19829 -30.80861 -29.52222 -26.49896 -25.41883 -23.90307 -22.65966 -21.25734 -20.42392 -20.05629 -19.05805 -17.83315 -16.24356 -15.30379 -15.15095 -15.00734 -14.64403 -14.41086 -14.14156 -13.93572 -13.75487 -13.27789 -13.14609 -13.00973 -12.56344 -12.35445 -12.02111 -11.85829 -11.50408 -11.49287 -11.36632 -11.06409 -11.05659 -11.00743 -10.89266 -10.63574 -10.42322 -10.34323 -10.19366 -10.13165 -9.87755 -9.46916 -8.38717 -7.94980 -7.87297 -6.38841 -3.79504 3.22090 3.27381 3.31999 3.95370 4.13407 4.36558 4.59628 4.73289 4.89201 5.02421 5.11858 5.16809 5.25074 5.26929 5.30879 5.32473 5.43872 5.49528 5.55425 5.62550 5.73188 5.78451 5.85578 5.91610 5.97248 5.99138 6.02638 6.05608 6.07881 6.12162 6.16252 6.27568 6.30160 6.34365 6.37373 6.57573 6.74079 7.36310 7.57670 7.77773 8.09654 8.64958 9.21017 9.58076 10.09952 10.78988 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003897 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.835702 B = 7182.391544 C = 8076.052839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.071 4.071 5 H 0.068 0.932 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.114 4.114 9 C -0.151 4.151 10 C 0.093 3.907 11 H 0.074 0.926 12 N -0.661 5.661 13 C 0.051 3.949 14 C 0.442 3.558 15 O -0.583 6.583 16 N -0.565 5.565 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.348 0.652 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -14.747 11.310 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.090 4.090 5 H 0.086 0.914 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.152 4.152 9 C -0.191 4.191 10 C -0.018 4.018 11 H 0.092 0.908 12 N -0.291 5.291 13 C -0.081 4.081 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.202 5.202 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.167 0.833 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.312 -15.099 10.836 18.878 hybrid contribution 0.849 1.151 -0.315 1.465 sum 4.161 -13.948 10.520 17.959 Atomic orbital electron populations 1.21771 0.96311 1.00933 1.01956 1.21582 0.95538 0.97768 1.01275 1.21567 0.94262 0.95760 1.03139 1.21076 0.95800 0.95047 0.97088 0.91397 1.21653 0.94962 1.00817 0.97875 1.21547 0.96126 0.96719 1.01322 1.21464 0.99872 0.96210 0.97698 1.22317 0.97659 1.00943 0.98153 1.21625 0.91499 0.95631 0.93038 0.90787 1.60177 1.57465 1.07154 1.04334 1.21686 0.99709 0.88701 0.98045 1.19858 0.85007 0.83109 0.89323 1.90519 1.55268 1.58382 1.42565 1.41862 1.57916 1.05021 1.15372 1.19654 1.40032 0.90923 0.92273 0.88018 1.25250 0.97694 0.95949 0.99033 1.69606 1.48779 1.04298 1.31765 0.85926 0.79460 0.77402 0.81476 1.19892 1.20998 1.19940 0.92496 0.93383 0.93048 0.92386 0.92613 0.92902 0.89684 0.91815 0.92174 0.92149 0.92417 0.92090 0.92404 0.92069 0.91827 0.83261 0.89809 0.94079 0.77502 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.32 5.69 -26.73 -0.15 -1.47 16 3 C -0.11 -1.34 4.60 -26.73 -0.12 -1.46 16 4 C -0.07 -0.81 1.90 -90.62 -0.17 -0.98 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.12 -1.09 4.96 -26.73 -0.13 -1.22 16 7 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 8 C -0.11 -1.09 5.92 -26.73 -0.16 -1.25 16 9 C -0.15 -1.72 5.17 -26.73 -0.14 -1.85 16 10 C 0.09 1.17 1.91 -67.71 -0.13 1.04 16 11 H 0.07 0.95 7.80 -51.93 -0.40 0.55 16 12 N -0.66 -10.69 5.02 -107.99 -0.54 -11.23 16 13 C 0.05 0.92 5.96 -4.98 -0.03 0.89 16 14 C 0.44 10.56 7.82 -10.99 -0.09 10.48 16 15 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 16 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 17 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 21 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.29 7.45 -51.93 -0.39 0.90 16 32 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.73 7.45 -51.93 -0.39 0.35 16 39 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 40 H 0.35 5.93 8.17 -39.29 -0.32 5.60 16 41 H 0.08 1.41 8.05 -51.93 -0.42 0.99 16 42 H 0.04 0.68 7.44 -51.93 -0.39 0.29 16 43 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -29.88 345.52 -8.65 -38.53 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.89 Total: 12.20 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.15 Total: -6.36 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.12 Total: -49.91 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.88 -8.65 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.678 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds