Wall clock time and date at job start Mon Mar 30 2020 00:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47280 * 2 1 4 4 C 1.53002 * 109.46975 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47067 * 54.99833 * 4 3 2 6 6 C 1.52997 * 109.47143 * 294.99816 * 4 3 2 7 7 C 1.53002 * 109.46817 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 4 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 12 12 N 1.46898 * 109.47548 * 179.97438 * 10 9 8 13 13 C 1.46900 * 111.00190 * 275.00196 * 12 10 9 14 14 C 1.50698 * 109.47212 * 179.97438 * 13 12 10 15 15 O 1.21295 * 119.99984 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00114 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00276 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00223 * 359.97438 * 17 16 14 19 19 C 1.38956 * 120.00210 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00008 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47154 * 60.00194 * 21 19 17 23 23 H 1.48501 * 109.47087 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47604 * 300.00094 * 21 19 17 25 25 H 1.09003 * 109.46432 * 60.00033 * 1 2 3 26 26 H 1.08993 * 109.47565 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47055 * 300.00570 * 1 2 3 28 28 H 1.08997 * 109.47047 * 239.99479 * 2 1 3 29 29 H 1.08999 * 109.47029 * 119.99558 * 2 1 3 30 30 H 1.08997 * 109.47507 * 59.99760 * 3 2 1 31 31 H 1.08999 * 109.46729 * 299.99742 * 3 2 1 32 32 H 1.08993 * 109.47194 * 59.99677 * 6 4 3 33 33 H 1.09002 * 109.46695 * 299.99691 * 6 4 3 34 34 H 1.08992 * 109.47063 * 299.99823 * 7 6 4 35 35 H 1.09004 * 109.46733 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 37 37 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 40 40 H 1.00896 * 110.99675 * 38.95895 * 12 10 9 41 41 H 1.09002 * 109.47391 * 299.99994 * 13 12 10 42 42 H 1.09005 * 109.46934 * 60.00097 * 13 12 10 43 43 H 0.97004 * 119.99984 * 0.02562 * 16 14 13 44 44 H 0.96997 * 119.99755 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 5.6095 0.8335 1.3091 8 6 6.1191 2.2707 1.1837 9 6 5.6097 2.8801 -0.1240 10 6 4.0797 2.8796 -0.1249 11 1 3.7157 3.4690 0.7167 12 7 3.5906 3.4653 -1.3802 13 6 3.5272 4.9300 -1.2882 14 6 3.0229 5.4939 -2.5916 15 8 2.7432 4.7488 -3.5069 16 7 2.8816 6.8259 -2.7398 17 6 2.4223 7.3389 -3.9253 18 1 2.1741 6.6755 -4.7407 19 6 2.2771 8.7123 -4.0783 20 7 2.5796 9.5195 -3.0864 21 14 1.6520 9.4112 -5.6939 22 1 0.2963 8.8737 -5.9741 23 1 1.5874 10.8918 -5.6007 24 1 2.5746 9.0236 -6.7910 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.7161 -0.1906 1.3979 33 1 3.7158 1.4227 2.1498 34 1 5.9735 0.2442 0.4676 35 1 5.9724 0.3998 2.2410 36 1 5.7551 2.8601 2.0253 37 1 7.2091 2.2711 1.1838 38 1 5.9730 3.9038 -0.2137 39 1 5.9737 2.2908 -0.9655 40 1 4.1612 3.1763 -2.1605 41 1 2.8503 5.2146 -0.4827 42 1 4.5224 5.3246 -1.0829 43 1 3.1049 7.4218 -2.0077 44 1 2.4786 10.4783 -3.1934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548488067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:49 Heat of formation + Delta-G solvation = -95.732034 kcal Electronic energy + Delta-G solvation = -20947.662257 eV Core-core repulsion = 17897.214508 eV Total energy + Delta-G solvation = -3050.447749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57250 -39.74767 -36.24606 -35.78600 -35.29521 -33.26774 -31.66702 -30.65753 -27.95514 -26.65264 -25.49727 -23.57834 -22.17604 -21.36876 -21.28514 -20.61758 -19.86757 -17.85218 -16.86324 -16.36318 -16.21430 -16.03455 -15.93296 -15.34644 -15.11845 -15.06845 -14.49572 -14.26516 -14.00348 -13.81841 -13.59244 -13.33821 -13.21575 -13.13362 -12.86857 -12.61320 -12.43929 -12.21727 -12.12681 -11.94429 -11.88164 -11.75851 -11.50811 -11.45386 -11.27034 -11.04365 -10.79603 -10.31912 -10.02179 -9.16895 -8.46971 -5.95950 1.39405 1.41057 1.52219 2.04971 2.28946 2.94275 3.20155 3.54110 3.69499 3.89488 4.05906 4.17492 4.25171 4.33723 4.35394 4.38618 4.43804 4.49729 4.56103 4.60344 4.63622 4.71607 4.81137 4.88450 4.97144 5.07028 5.15144 5.16587 5.17325 5.25824 5.28888 5.34659 5.40019 5.42122 5.48155 5.50985 5.64534 5.72895 5.93740 6.18293 6.45853 6.59907 7.12007 7.55666 8.11195 8.70343 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003897 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.835702 B = 7182.391544 C = 8076.052839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.066 4.066 5 H 0.059 0.941 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.148 4.148 10 C 0.094 3.906 11 H 0.076 0.924 12 N -0.672 5.672 13 C 0.068 3.932 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.336 4.336 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.269 1.269 24 H -0.271 1.271 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.341 0.659 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -15.300 12.699 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.144 4.144 4 C -0.086 4.086 5 H 0.078 0.922 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.187 4.187 10 C -0.015 4.015 11 H 0.094 0.906 12 N -0.302 5.302 13 C -0.065 4.065 14 C 0.226 3.774 15 O -0.509 6.509 16 N -0.211 5.211 17 C -0.465 4.465 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.196 1.196 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.884 -15.651 12.263 20.259 hybrid contribution 0.672 1.290 -0.729 1.626 sum 4.555 -14.362 11.534 18.975 Atomic orbital electron populations 1.21778 0.96232 1.01697 1.01320 1.21552 0.95614 0.96627 1.01951 1.21488 0.94945 0.96574 1.01362 1.21042 0.95119 0.94169 0.98224 0.92243 1.21612 0.95484 1.01254 0.96356 1.21540 0.95476 0.96250 1.02197 1.21456 1.00453 0.96577 0.96449 1.22254 0.96380 1.00706 0.99339 1.21710 0.92574 0.96120 0.91131 0.90612 1.60198 1.58270 1.06010 1.05771 1.21520 1.00658 0.89747 0.94561 1.20895 0.83389 0.82302 0.90856 1.90486 1.56641 1.59161 1.44637 1.41932 1.58367 1.05847 1.14925 1.19639 1.42361 0.91529 0.92998 0.90376 1.26040 0.97158 0.95625 1.02357 1.69668 1.48587 1.04751 1.33155 0.84993 0.78727 0.77256 0.77385 1.19749 1.19379 1.19644 0.94185 0.91924 0.92651 0.92807 0.90710 0.92785 0.93267 0.90666 0.91755 0.92257 0.90702 0.91654 0.91468 0.92793 0.92225 0.84069 0.88319 0.92038 0.77035 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.91 71.98 0.71 -2.33 16 2 C -0.12 -2.40 5.69 30.60 0.17 -2.23 16 3 C -0.11 -2.54 4.60 30.60 0.14 -2.40 16 4 C -0.07 -1.44 1.90 -10.79 -0.02 -1.46 16 5 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 6 C -0.11 -1.78 4.96 30.59 0.15 -1.63 16 7 C -0.12 -1.74 5.92 30.60 0.18 -1.56 16 8 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 9 C -0.15 -3.14 5.17 30.59 0.16 -2.98 16 10 C 0.09 2.29 1.91 44.92 0.09 2.37 16 11 H 0.08 1.83 7.80 -2.39 -0.02 1.81 16 12 N -0.67 -21.86 5.02 -495.57 -2.49 -24.35 16 13 C 0.07 2.41 5.96 85.56 0.51 2.92 16 14 C 0.44 21.44 7.82 87.66 0.69 22.12 16 15 O -0.62 -35.40 15.78 -3.08 -0.05 -35.45 16 16 N -0.57 -30.15 5.29 -306.99 -1.62 -31.77 16 17 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 18 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 20 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 21 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.23 6.56 -2.39 -0.02 1.21 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.54 7.45 -2.39 -0.02 1.52 16 32 H 0.07 1.08 6.56 -2.39 -0.02 1.07 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 39 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 40 H 0.34 11.86 8.17 -89.70 -0.73 11.12 16 41 H 0.10 3.25 8.05 -2.39 -0.02 3.23 16 42 H 0.06 1.96 7.44 -2.38 -0.02 1.94 16 43 H 0.40 19.77 7.90 -92.71 -0.73 19.03 16 44 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -64.96 345.52 1.90 -63.06 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.49 Total: 40.71 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 4.24 Total: -7.65 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -3.83 Total: -106.16 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.05 Total: -35.45 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.96 1.90 -63.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548488067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.669 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds