Wall clock time and date at job start Mon Mar 30 2020 00:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 C 1.52992 * 109.47512 * 120.00185 * 2 1 3 5 5 H 1.08995 * 109.47498 * 184.99570 * 4 2 1 6 6 N 1.46904 * 109.47085 * 305.00067 * 4 2 1 7 7 C 1.50703 * 109.47059 * 64.99583 * 4 2 1 8 8 O 1.21276 * 120.00313 * 260.00017 * 7 4 2 9 9 N 1.34787 * 119.99759 * 80.00134 * 7 4 2 10 10 C 1.46924 * 120.63033 * 359.72119 * 9 7 4 11 11 C 1.53194 * 108.77334 * 233.88527 * 10 9 7 12 12 C 1.53038 * 109.31101 * 305.36035 * 11 10 9 13 13 C 1.52997 * 109.45866 * 181.38783 * 12 11 10 14 14 C 1.50700 * 109.47344 * 64.93513 * 13 12 11 15 15 H 1.08001 * 119.99729 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00169 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99871 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47119 * 89.99696 * 18 16 14 20 20 H 1.48501 * 109.47196 * 209.99556 * 18 16 14 21 21 H 1.48491 * 109.47040 * 329.99998 * 18 16 14 22 22 C 1.53045 * 109.53516 * 61.36880 * 12 11 10 23 23 C 1.46926 * 120.62918 * 180.02562 * 9 7 4 24 24 H 1.08995 * 109.46877 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46673 * 300.00005 * 1 2 3 26 26 H 1.08992 * 109.47277 * 59.99521 * 1 2 3 27 27 H 1.08999 * 109.46894 * 240.00451 * 2 1 3 28 28 H 1.09001 * 109.46827 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47320 * 300.00418 * 3 2 1 30 30 H 1.09003 * 109.47418 * 60.00450 * 3 2 1 31 31 H 1.00893 * 110.99840 * 59.99653 * 6 4 2 32 32 H 1.00901 * 110.99796 * 183.95020 * 6 4 2 33 33 H 1.09004 * 109.58777 * 353.67036 * 10 9 7 34 34 H 1.08994 * 109.58607 * 114.09373 * 10 9 7 35 35 H 1.09005 * 109.49558 * 185.41228 * 11 10 9 36 36 H 1.09001 * 109.49919 * 65.31913 * 11 10 9 37 37 H 1.08994 * 109.46487 * 301.34997 * 12 11 10 38 38 H 1.09001 * 109.47304 * 184.93831 * 13 12 11 39 39 H 1.09004 * 109.47423 * 304.93550 * 13 12 11 40 40 H 0.96999 * 119.99904 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.49685 * 178.67744 * 22 12 11 42 42 H 1.09001 * 109.52360 * 58.59815 * 22 12 11 43 43 H 1.09001 * 109.58178 * 245.90575 * 23 9 7 44 44 H 1.08998 * 109.58625 * 6.18591 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 3.1264 -0.6444 1.2950 6 7 1.4544 -0.1020 2.4456 7 6 1.6414 -2.1733 1.1888 8 8 0.6787 -2.5644 1.8142 9 7 2.3547 -3.0374 0.4396 10 6 3.5197 -2.5775 -0.3284 11 6 3.3417 -2.9952 -1.7916 12 6 3.0992 -4.5047 -1.8610 13 6 2.9554 -4.9310 -3.3234 14 6 4.2589 -4.7015 -4.0440 15 1 5.1051 -4.2921 -3.5123 16 6 4.3711 -5.0142 -5.3821 17 7 5.5088 -4.8144 -6.0109 18 14 2.9073 -5.7217 -6.3020 19 1 2.1056 -4.6147 -6.8829 20 1 3.3888 -6.6087 -7.3913 21 1 2.0637 -6.5038 -5.3631 22 6 1.8177 -4.8526 -1.1001 23 6 1.9780 -4.4559 0.3703 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 0.4473 -0.1605 2.4268 32 1 1.8251 -0.5184 3.2866 33 1 3.5939 -1.4919 -0.2648 34 1 4.4251 -3.0319 0.0738 35 1 4.2418 -2.7451 -2.3533 36 1 2.4879 -2.4694 -2.2188 37 1 3.9422 -5.0291 -1.4113 38 1 2.6959 -5.9886 -3.3697 39 1 2.1696 -4.3430 -3.7977 40 1 5.5877 -5.0341 -6.9524 41 1 1.6329 -5.9246 -1.1698 42 1 0.9778 -4.3097 -1.5337 43 1 2.7575 -5.0637 0.8297 44 1 1.0364 -4.6100 0.8972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571803315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:22 Heat of formation + Delta-G solvation = -62.122928 kcal Electronic energy + Delta-G solvation = -21835.318285 eV Core-core repulsion = 18786.327937 eV Total energy + Delta-G solvation = -3048.990348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52907 -37.82307 -36.42651 -34.12418 -32.20660 -31.94205 -30.92574 -28.72697 -27.24679 -26.45407 -24.39486 -22.94118 -21.69020 -20.39811 -19.72699 -18.49898 -17.32823 -16.76109 -16.62116 -15.99543 -15.16054 -14.51326 -14.25743 -14.01638 -13.88355 -13.69679 -13.54616 -13.23553 -13.07872 -12.72976 -12.32915 -12.27971 -12.11584 -12.10338 -11.50773 -11.29126 -11.17021 -10.95004 -10.93474 -10.79557 -10.69636 -10.37761 -10.15749 -9.91826 -9.73303 -9.53498 -9.10646 -8.84314 -8.57199 -8.47094 -6.08070 -4.05675 2.57810 3.09087 3.27623 3.35852 3.39186 4.31441 4.42036 4.49603 4.70718 4.77847 5.04351 5.06050 5.23406 5.24790 5.34347 5.39510 5.41224 5.49877 5.57012 5.63859 5.66672 5.82801 5.84266 5.85977 5.95904 5.99194 6.18632 6.22631 6.24761 6.29341 6.38052 6.54392 6.74112 6.80276 6.82773 6.91392 7.20507 7.22362 7.37848 7.48840 7.75953 8.15641 8.49357 8.96100 9.55192 11.05100 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025098 B = 0.004761 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.370459 B = 5879.825204 C = 6270.219235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.137 4.137 4 C 0.078 3.922 5 H 0.102 0.898 6 N -0.818 5.818 7 C 0.482 3.518 8 O -0.558 6.558 9 N -0.601 5.601 10 C 0.099 3.901 11 C -0.120 4.120 12 C -0.072 4.072 13 C -0.009 4.009 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.131 4.131 23 C 0.110 3.890 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.349 0.651 32 H 0.342 0.658 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 8.482 13.823 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 C -0.195 4.195 4 C -0.038 4.038 5 H 0.120 0.880 6 N -0.348 5.348 7 C 0.269 3.731 8 O -0.437 6.437 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.158 4.158 12 C -0.090 4.090 13 C -0.046 4.046 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.170 4.170 23 C -0.013 4.013 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.877 8.941 13.726 17.766 hybrid contribution -0.944 -1.526 -0.588 1.889 sum -7.821 7.414 13.138 16.993 Atomic orbital electron populations 1.21849 0.94814 1.02123 1.02038 1.21123 0.96637 0.97128 0.95558 1.21729 1.00770 0.94844 1.02137 1.21653 1.00813 0.87886 0.93415 0.88005 1.59203 1.12740 1.59605 1.03212 1.22043 0.82736 0.89621 0.78731 1.90646 1.28075 1.79405 1.45568 1.48291 1.29789 1.09212 1.46035 1.22037 0.87419 0.99695 0.93186 1.21914 1.03527 0.97128 0.93202 1.21002 0.95431 0.94825 0.97782 1.19615 0.97640 0.95996 0.91382 1.21121 0.97068 1.42550 0.94701 0.90838 1.25014 0.95546 0.95177 0.97679 1.69907 1.24914 1.48944 1.10498 0.86822 0.83450 0.79569 0.79689 1.20382 1.21456 1.19110 1.22043 0.99707 1.01238 0.93965 1.21639 1.01161 0.80610 0.97859 0.92674 0.92026 0.92322 0.90100 0.92765 0.92814 0.91404 0.83572 0.84622 0.90035 0.91276 0.89050 0.92294 0.91712 0.96623 0.97148 0.92772 0.91177 0.92157 0.91784 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.55 37.16 0.32 -1.33 16 2 C -0.09 -0.91 2.40 -90.62 -0.22 -1.12 16 3 C -0.14 -1.28 9.08 37.16 0.34 -0.94 16 4 C 0.08 0.85 2.06 -68.86 -0.14 0.71 16 5 H 0.10 1.02 6.81 -51.93 -0.35 0.66 16 6 N -0.82 -8.21 8.31 -5.66 -0.05 -8.25 16 7 C 0.48 6.62 6.01 -10.98 -0.07 6.56 16 8 O -0.56 -9.17 15.39 5.56 0.09 -9.08 16 9 N -0.60 -8.24 2.97 -172.80 -0.51 -8.76 16 10 C 0.10 1.27 5.76 -3.71 -0.02 1.25 16 11 C -0.12 -1.94 5.19 -26.61 -0.14 -2.08 16 12 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 14 C -0.52 -13.87 8.94 -34.44 -0.31 -14.17 16 15 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 16 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 22 C -0.13 -2.05 5.36 -26.63 -0.14 -2.20 16 23 C 0.11 1.56 6.43 -3.74 -0.02 1.54 16 24 H 0.05 0.71 7.16 -51.93 -0.37 0.34 16 25 H 0.06 0.62 6.61 -51.93 -0.34 0.28 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.93 6.95 -51.93 -0.36 0.57 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 31 H 0.35 3.69 6.62 -39.30 -0.26 3.43 16 32 H 0.34 3.21 9.06 -39.29 -0.36 2.86 16 33 H 0.08 0.88 4.83 -51.93 -0.25 0.63 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.24 7.00 -51.93 -0.36 0.88 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -30.15 333.06 -7.68 -37.84 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.54 Total: 4.67 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.79 Total: -11.79 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.21 Total: -43.33 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.15 -7.68 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571803315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.284 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds