Wall clock time and date at job start Mon Mar 30 2020 00:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 C 1.52992 * 109.47512 * 120.00185 * 2 1 3 5 5 H 1.08995 * 109.47498 * 184.99570 * 4 2 1 6 6 N 1.46904 * 109.47085 * 305.00067 * 4 2 1 7 7 C 1.50703 * 109.47059 * 64.99583 * 4 2 1 8 8 O 1.21276 * 120.00313 * 260.00017 * 7 4 2 9 9 N 1.34787 * 119.99759 * 80.00134 * 7 4 2 10 10 C 1.46924 * 120.63033 * 359.72119 * 9 7 4 11 11 C 1.53194 * 108.77334 * 233.88527 * 10 9 7 12 12 C 1.53038 * 109.31101 * 305.36035 * 11 10 9 13 13 C 1.52997 * 109.45866 * 181.38783 * 12 11 10 14 14 C 1.50700 * 109.47344 * 64.93513 * 13 12 11 15 15 H 1.08001 * 119.99729 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00169 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99871 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47119 * 89.99696 * 18 16 14 20 20 H 1.48501 * 109.47196 * 209.99556 * 18 16 14 21 21 H 1.48491 * 109.47040 * 329.99998 * 18 16 14 22 22 C 1.53045 * 109.53516 * 61.36880 * 12 11 10 23 23 C 1.46926 * 120.62918 * 180.02562 * 9 7 4 24 24 H 1.08995 * 109.46877 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46673 * 300.00005 * 1 2 3 26 26 H 1.08992 * 109.47277 * 59.99521 * 1 2 3 27 27 H 1.08999 * 109.46894 * 240.00451 * 2 1 3 28 28 H 1.09001 * 109.46827 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47320 * 300.00418 * 3 2 1 30 30 H 1.09003 * 109.47418 * 60.00450 * 3 2 1 31 31 H 1.00893 * 110.99840 * 59.99653 * 6 4 2 32 32 H 1.00901 * 110.99796 * 183.95020 * 6 4 2 33 33 H 1.09004 * 109.58777 * 353.67036 * 10 9 7 34 34 H 1.08994 * 109.58607 * 114.09373 * 10 9 7 35 35 H 1.09005 * 109.49558 * 185.41228 * 11 10 9 36 36 H 1.09001 * 109.49919 * 65.31913 * 11 10 9 37 37 H 1.08994 * 109.46487 * 301.34997 * 12 11 10 38 38 H 1.09001 * 109.47304 * 184.93831 * 13 12 11 39 39 H 1.09004 * 109.47423 * 304.93550 * 13 12 11 40 40 H 0.96999 * 119.99904 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.49685 * 178.67744 * 22 12 11 42 42 H 1.09001 * 109.52360 * 58.59815 * 22 12 11 43 43 H 1.09001 * 109.58178 * 245.90575 * 23 9 7 44 44 H 1.08998 * 109.58625 * 6.18591 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 3.1264 -0.6444 1.2950 6 7 1.4544 -0.1020 2.4456 7 6 1.6414 -2.1733 1.1888 8 8 0.6787 -2.5644 1.8142 9 7 2.3547 -3.0374 0.4396 10 6 3.5197 -2.5775 -0.3284 11 6 3.3417 -2.9952 -1.7916 12 6 3.0992 -4.5047 -1.8610 13 6 2.9554 -4.9310 -3.3234 14 6 4.2589 -4.7015 -4.0440 15 1 5.1051 -4.2921 -3.5123 16 6 4.3711 -5.0142 -5.3821 17 7 5.5088 -4.8144 -6.0109 18 14 2.9073 -5.7217 -6.3020 19 1 2.1056 -4.6147 -6.8829 20 1 3.3888 -6.6087 -7.3913 21 1 2.0637 -6.5038 -5.3631 22 6 1.8177 -4.8526 -1.1001 23 6 1.9780 -4.4559 0.3703 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 0.4473 -0.1605 2.4268 32 1 1.8251 -0.5184 3.2866 33 1 3.5939 -1.4919 -0.2648 34 1 4.4251 -3.0319 0.0738 35 1 4.2418 -2.7451 -2.3533 36 1 2.4879 -2.4694 -2.2188 37 1 3.9422 -5.0291 -1.4113 38 1 2.6959 -5.9886 -3.3697 39 1 2.1696 -4.3430 -3.7977 40 1 5.5877 -5.0341 -6.9524 41 1 1.6329 -5.9246 -1.1698 42 1 0.9778 -4.3097 -1.5337 43 1 2.7575 -5.0637 0.8297 44 1 1.0364 -4.6100 0.8972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571803315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:21 Heat of formation + Delta-G solvation = -81.829848 kcal Electronic energy + Delta-G solvation = -21836.172842 eV Core-core repulsion = 18786.327937 eV Total energy + Delta-G solvation = -3049.844905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60945 -39.05303 -37.40539 -35.70665 -34.07643 -32.77375 -32.14117 -30.38319 -28.05354 -27.56529 -25.84014 -24.17364 -23.18702 -21.55536 -20.97556 -19.63069 -18.84717 -18.31582 -17.54842 -17.04936 -16.38371 -16.22208 -15.45863 -15.19469 -15.14916 -14.93475 -14.63128 -14.51949 -14.26938 -14.11768 -13.87574 -13.48782 -13.16294 -13.03247 -12.89948 -12.87183 -12.42811 -12.20973 -12.11274 -11.99406 -11.75652 -11.74592 -11.60790 -11.41830 -11.25526 -11.03623 -10.91836 -10.72222 -9.74545 -9.64364 -8.25315 -6.26565 1.34870 1.37335 1.47648 1.51295 2.02311 2.37383 3.10558 3.38900 3.59834 3.84045 3.87165 3.96820 3.98522 4.05941 4.17300 4.23390 4.36917 4.49395 4.55383 4.62931 4.64399 4.78910 4.84471 4.86465 4.91970 4.98359 5.06197 5.07567 5.14620 5.20950 5.21944 5.34750 5.37390 5.40497 5.54217 5.58752 5.71282 5.73750 5.99492 6.34192 6.39236 6.42477 6.80842 7.08162 7.37486 8.90784 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025098 B = 0.004761 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.370459 B = 5879.825204 C = 6270.219235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.132 4.132 4 C 0.084 3.916 5 H 0.118 0.882 6 N -0.811 5.811 7 C 0.481 3.519 8 O -0.586 6.586 9 N -0.603 5.603 10 C 0.108 3.892 11 C -0.115 4.115 12 C -0.069 4.069 13 C -0.007 4.007 14 C -0.514 4.514 15 H 0.044 0.956 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.251 1.251 22 C -0.122 4.122 23 C 0.113 3.887 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.347 0.653 32 H 0.347 0.653 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 9.082 14.869 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.190 4.190 4 C -0.032 4.032 5 H 0.136 0.864 6 N -0.340 5.340 7 C 0.268 3.732 8 O -0.467 6.467 9 N -0.335 5.335 10 C -0.014 4.014 11 C -0.153 4.153 12 C -0.088 4.088 13 C -0.045 4.045 14 C -0.552 4.552 15 H 0.063 0.937 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.175 1.175 22 C -0.160 4.160 23 C -0.010 4.010 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.876 9.549 14.793 19.288 hybrid contribution -0.595 -1.693 -0.884 2.001 sum -8.471 7.855 13.908 18.081 Atomic orbital electron populations 1.21816 0.95180 1.00719 1.02766 1.21128 0.96327 0.97942 0.94994 1.21687 1.01221 0.93661 1.02385 1.21716 1.01694 0.85861 0.93908 0.86432 1.59216 1.12568 1.59065 1.03180 1.22611 0.82027 0.90589 0.77935 1.90633 1.29252 1.80053 1.46738 1.48360 1.29964 1.09082 1.46059 1.21989 0.87475 1.01305 0.90618 1.21785 1.02180 0.95820 0.95496 1.20914 0.96668 0.96034 0.95156 1.19579 0.95121 0.95861 0.93896 1.21441 0.97988 1.41008 0.94769 0.93743 1.25876 0.98228 0.95973 0.98906 1.70048 1.27243 1.50954 1.10928 0.85825 0.80186 0.79110 0.78515 1.19613 1.21349 1.17517 1.21917 0.97784 1.01708 0.94567 1.21568 1.01502 0.81305 0.96579 0.95033 0.91282 0.91670 0.90943 0.91999 0.92396 0.91336 0.83853 0.84056 0.87559 0.90171 0.91318 0.92693 0.92217 0.96816 0.97151 0.92759 0.90389 0.92826 0.90503 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.55 71.98 0.62 -2.40 16 2 C -0.08 -1.62 2.40 -10.80 -0.03 -1.65 16 3 C -0.13 -2.12 9.08 71.98 0.65 -1.47 16 4 C 0.08 1.63 2.06 44.17 0.09 1.72 16 5 H 0.12 1.95 6.81 -2.39 -0.02 1.93 16 6 N -0.81 -14.49 8.31 -171.81 -1.43 -15.92 16 7 C 0.48 12.33 6.01 87.66 0.53 12.86 16 8 O -0.59 -18.49 15.39 -3.02 -0.05 -18.54 16 9 N -0.60 -15.38 2.97 -818.99 -2.43 -17.82 16 10 C 0.11 2.57 5.76 86.36 0.50 3.07 16 11 C -0.11 -3.63 5.19 30.67 0.16 -3.47 16 12 C -0.07 -2.44 2.10 -10.77 -0.02 -2.46 16 13 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 14 C -0.51 -27.97 8.94 25.60 0.23 -27.74 16 15 H 0.04 2.61 7.30 -2.91 -0.02 2.59 16 16 C 0.01 0.38 5.47 84.65 0.46 0.84 16 17 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 18 Si 0.94 43.79 27.47 68.60 1.88 45.67 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 22 C -0.12 -3.62 5.36 30.66 0.16 -3.45 16 23 C 0.11 3.02 6.43 86.35 0.56 3.57 16 24 H 0.03 0.78 7.16 -2.39 -0.02 0.77 16 25 H 0.07 1.29 6.61 -2.39 -0.02 1.27 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.53 6.95 -2.39 -0.02 1.51 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.11 7.75 -2.39 -0.02 1.09 16 31 H 0.35 6.72 6.62 -89.70 -0.59 6.13 16 32 H 0.35 5.75 9.06 -89.69 -0.81 4.94 16 33 H 0.11 2.01 4.83 -2.38 -0.01 2.00 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.49 6.91 -2.38 -0.02 2.48 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 39 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 40 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 2.24 7.00 -2.39 -0.02 2.23 16 Total: -1.00 -64.87 333.06 1.81 -63.06 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.47 Total: 22.21 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 4.01 Total: -20.79 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -3.56 Total: -91.61 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.05 Total: -18.54 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -64.87 1.81 -63.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571803315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.771 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds