Wall clock time and date at job start Mon Mar 30 2020 00:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46832 * 2 1 4 4 C 1.52999 * 109.47255 * 119.99530 * 2 1 3 5 5 C 1.50698 * 109.47009 * 175.00258 * 4 2 1 6 6 O 1.21274 * 120.00423 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99922 * 180.02562 * 5 4 2 8 8 C 1.46919 * 120.63144 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 233.55709 * 8 7 5 10 10 C 1.53070 * 109.29524 * 305.57804 * 9 8 7 11 11 N 1.46899 * 109.44608 * 181.23659 * 10 9 8 12 12 C 1.46903 * 110.99959 * 84.79445 * 11 10 9 13 13 C 1.50702 * 109.47091 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99830 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99835 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00126 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99751 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47366 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47030 * 120.00024 * 17 15 13 20 20 H 1.48501 * 109.47160 * 239.99508 * 17 15 13 21 21 C 1.53039 * 109.65812 * 61.15209 * 10 9 8 22 22 C 1.46928 * 120.62874 * 0.02562 * 7 5 4 23 23 H 1.09000 * 109.46986 * 300.00367 * 1 2 3 24 24 H 1.09000 * 109.47026 * 60.00093 * 1 2 3 25 25 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47447 * 240.00243 * 2 1 3 27 27 H 1.08994 * 109.47260 * 59.99764 * 3 2 1 28 28 H 1.08995 * 109.46648 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46727 * 299.99792 * 3 2 1 30 30 H 1.09001 * 109.46917 * 55.00129 * 4 2 1 31 31 H 1.08997 * 109.47262 * 295.00685 * 4 2 1 32 32 H 1.09002 * 109.58751 * 353.41659 * 8 7 5 33 33 H 1.08996 * 109.58750 * 113.69843 * 8 7 5 34 34 H 1.08997 * 109.50046 * 65.38734 * 9 8 7 35 35 H 1.09003 * 109.49733 * 185.48713 * 9 8 7 36 36 H 1.09007 * 109.35101 * 301.12962 * 10 9 8 37 37 H 1.00902 * 110.99865 * 320.84368 * 11 10 9 38 38 H 1.09000 * 109.46802 * 300.00363 * 12 11 10 39 39 H 1.08994 * 109.46993 * 60.00054 * 12 11 10 40 40 H 0.97005 * 119.99942 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.49876 * 178.74890 * 21 10 9 42 42 H 1.09005 * 109.52615 * 58.67140 * 21 10 9 43 43 H 1.08998 * 109.58787 * 246.16207 * 22 7 5 44 44 H 1.09007 * 109.58600 * 6.44520 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5420 -0.8292 1.1889 6 8 4.1450 -0.3747 0.2400 7 7 4.2150 -1.4319 2.1891 8 6 5.6791 -1.5455 2.1443 9 6 6.0688 -3.0146 2.3356 10 6 5.4336 -3.5426 3.6244 11 7 5.8294 -4.9428 3.8266 12 6 7.1313 -5.0297 4.5014 13 6 7.5034 -6.4778 4.6906 14 1 6.8393 -7.2556 4.3438 15 6 8.6915 -6.8094 5.3064 16 7 9.5004 -5.8621 5.7283 17 14 9.1524 -8.6043 5.5415 18 1 8.0811 -9.4678 4.9829 19 1 10.4299 -8.8836 4.8378 20 1 9.3130 -8.8885 6.9902 21 6 3.9093 -3.4534 3.5211 22 6 3.4983 -1.9889 3.3445 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -1.7197 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 6.0435 -1.1935 1.1791 33 1 6.1168 -0.9445 2.9413 34 1 5.7094 -3.5996 1.4891 35 1 7.1537 -3.0976 2.4015 36 1 5.7762 -2.9431 4.4678 37 1 5.8414 -5.4451 2.9516 38 1 7.8895 -4.5365 3.8931 39 1 7.0702 -4.5400 5.4732 40 1 10.3365 -6.0955 6.1612 41 1 3.4592 -3.8506 4.4310 42 1 3.5677 -4.0329 2.6634 43 1 3.7575 -1.4262 4.2413 44 1 2.4236 -1.9272 3.1723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575116553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:40 Heat of formation + Delta-G solvation = -59.964274 kcal Electronic energy + Delta-G solvation = -20878.977080 eV Core-core repulsion = 17830.080338 eV Total energy + Delta-G solvation = -3048.896742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33047 -37.96983 -35.73263 -34.95290 -32.75422 -31.21253 -30.63060 -28.25111 -27.27812 -26.40827 -23.88120 -23.10899 -21.58043 -20.95583 -20.13582 -18.83671 -17.26604 -16.37042 -16.10852 -15.68842 -14.85720 -14.69453 -14.36917 -14.12307 -14.08570 -13.78487 -13.64512 -13.45773 -12.54918 -12.50873 -12.45054 -12.25363 -12.09698 -11.95407 -11.72532 -11.35013 -11.25091 -11.12264 -11.00292 -10.87923 -10.84903 -10.69485 -10.49239 -10.30437 -9.89350 -9.63951 -9.18876 -8.63435 -8.50836 -7.32253 -6.06245 -4.08219 2.61531 2.98660 3.29031 3.36462 3.41368 4.39216 4.41450 4.55303 4.70782 4.82476 4.93186 5.03197 5.13576 5.20650 5.27779 5.30068 5.35365 5.38576 5.43565 5.48933 5.50381 5.65040 5.69492 5.73287 5.78507 5.91567 5.92642 5.98952 6.11867 6.16808 6.17764 6.27904 6.35444 6.53327 6.64585 7.21143 7.39324 7.41651 7.75750 8.09403 8.17570 8.34594 8.57357 9.01388 9.57046 11.04785 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049767 B = 0.003131 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.486532 B = 8940.192429 C = 9171.947034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.137 4.137 5 C 0.513 3.487 6 O -0.545 6.545 7 N -0.610 5.610 8 C 0.115 3.885 9 C -0.162 4.162 10 C 0.087 3.913 11 N -0.685 5.685 12 C 0.194 3.806 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.121 4.121 22 C 0.106 3.894 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.329 0.671 38 H -0.013 1.013 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 12.039 -7.664 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.302 3.698 6 O -0.423 6.423 7 N -0.343 5.343 8 C -0.008 4.008 9 C -0.202 4.202 10 C -0.024 4.024 11 N -0.313 5.313 12 C 0.068 3.932 13 C -0.553 4.553 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.160 4.160 22 C -0.017 4.017 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.146 0.854 38 H 0.005 0.995 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.230 12.216 -7.462 21.641 hybrid contribution 1.054 -0.778 -0.344 1.355 sum -15.176 11.438 -7.806 20.544 Atomic orbital electron populations 1.21864 0.95034 1.01723 1.01883 1.20874 0.94960 0.96902 0.97298 1.21955 1.03208 0.94991 1.00848 1.21805 0.92282 1.02832 1.00722 1.20701 0.90146 0.77261 0.81671 1.90639 1.70395 1.48137 1.33100 1.48219 1.07668 1.57207 1.21252 1.21560 0.79186 0.97041 1.03003 1.22689 1.02065 0.95488 0.99936 1.21502 0.93545 0.91960 0.95411 1.60765 1.34742 1.08711 1.27125 1.19579 0.83006 0.97152 0.93489 1.21226 1.03744 0.92136 1.38201 0.91967 1.24990 0.96315 0.97667 0.95622 1.69968 1.11378 1.32081 1.40288 0.86437 0.78279 0.84857 0.77808 1.19662 1.21092 1.20981 1.21907 0.97064 0.94186 1.02862 1.21835 0.96545 0.95075 0.88265 0.92676 0.92475 0.92659 0.90488 0.93467 0.90679 0.93073 0.88912 0.89035 0.89397 0.91615 0.91860 0.90396 0.90997 0.85409 0.99491 0.95509 0.92950 0.89962 0.91875 0.91225 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.08 -0.75 2.57 -90.61 -0.23 -0.98 16 3 C -0.15 -1.48 8.94 37.16 0.33 -1.15 16 4 C -0.14 -1.23 3.52 -27.88 -0.10 -1.33 16 5 C 0.51 6.52 7.41 -10.98 -0.08 6.44 16 6 O -0.54 -8.67 13.38 5.56 0.07 -8.59 16 7 N -0.61 -7.56 2.98 -172.80 -0.51 -8.07 16 8 C 0.11 1.58 6.43 -3.71 -0.02 1.56 16 9 C -0.16 -2.48 5.34 -26.59 -0.14 -2.62 16 10 C 0.09 1.42 2.43 -67.66 -0.16 1.26 16 11 N -0.68 -14.02 6.24 -107.93 -0.67 -14.70 16 12 C 0.19 4.95 5.24 -4.97 -0.03 4.93 16 13 C -0.51 -14.40 9.32 -34.44 -0.32 -14.72 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.12 -1.56 5.69 -26.64 -0.15 -1.71 16 22 C 0.11 1.10 6.34 -3.74 -0.02 1.07 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.92 5.95 -51.93 -0.31 0.61 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 31 H 0.09 0.68 7.94 -51.93 -0.41 0.27 16 32 H 0.09 1.29 7.00 -51.93 -0.36 0.92 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 36 H 0.07 1.25 7.80 -51.93 -0.40 0.85 16 37 H 0.33 6.59 8.47 -39.29 -0.33 6.26 16 38 H -0.01 -0.34 7.41 -51.93 -0.38 -0.73 16 39 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.65 5.93 -51.92 -0.31 0.34 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -31.03 343.77 -8.81 -39.84 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.90 Total: 2.15 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.69 Total: -6.47 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.45 Total: -48.64 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.03 -8.81 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575116553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.126 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds