Wall clock time and date at job start Mon Mar 30 2020 00:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46832 * 2 1 4 4 C 1.52999 * 109.47255 * 119.99530 * 2 1 3 5 5 C 1.50698 * 109.47009 * 175.00258 * 4 2 1 6 6 O 1.21274 * 120.00423 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99922 * 180.02562 * 5 4 2 8 8 C 1.46919 * 120.63144 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 233.55709 * 8 7 5 10 10 C 1.53070 * 109.29524 * 305.57804 * 9 8 7 11 11 N 1.46899 * 109.44608 * 181.23659 * 10 9 8 12 12 C 1.46903 * 110.99959 * 84.79445 * 11 10 9 13 13 C 1.50702 * 109.47091 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99830 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99835 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00126 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99751 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47366 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47030 * 120.00024 * 17 15 13 20 20 H 1.48501 * 109.47160 * 239.99508 * 17 15 13 21 21 C 1.53039 * 109.65812 * 61.15209 * 10 9 8 22 22 C 1.46928 * 120.62874 * 0.02562 * 7 5 4 23 23 H 1.09000 * 109.46986 * 300.00367 * 1 2 3 24 24 H 1.09000 * 109.47026 * 60.00093 * 1 2 3 25 25 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47447 * 240.00243 * 2 1 3 27 27 H 1.08994 * 109.47260 * 59.99764 * 3 2 1 28 28 H 1.08995 * 109.46648 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46727 * 299.99792 * 3 2 1 30 30 H 1.09001 * 109.46917 * 55.00129 * 4 2 1 31 31 H 1.08997 * 109.47262 * 295.00685 * 4 2 1 32 32 H 1.09002 * 109.58751 * 353.41659 * 8 7 5 33 33 H 1.08996 * 109.58750 * 113.69843 * 8 7 5 34 34 H 1.08997 * 109.50046 * 65.38734 * 9 8 7 35 35 H 1.09003 * 109.49733 * 185.48713 * 9 8 7 36 36 H 1.09007 * 109.35101 * 301.12962 * 10 9 8 37 37 H 1.00902 * 110.99865 * 320.84368 * 11 10 9 38 38 H 1.09000 * 109.46802 * 300.00363 * 12 11 10 39 39 H 1.08994 * 109.46993 * 60.00054 * 12 11 10 40 40 H 0.97005 * 119.99942 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.49876 * 178.74890 * 21 10 9 42 42 H 1.09005 * 109.52615 * 58.67140 * 21 10 9 43 43 H 1.08998 * 109.58787 * 246.16207 * 22 7 5 44 44 H 1.09007 * 109.58600 * 6.44520 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5420 -0.8292 1.1889 6 8 4.1450 -0.3747 0.2400 7 7 4.2150 -1.4319 2.1891 8 6 5.6791 -1.5455 2.1443 9 6 6.0688 -3.0146 2.3356 10 6 5.4336 -3.5426 3.6244 11 7 5.8294 -4.9428 3.8266 12 6 7.1313 -5.0297 4.5014 13 6 7.5034 -6.4778 4.6906 14 1 6.8393 -7.2556 4.3438 15 6 8.6915 -6.8094 5.3064 16 7 9.5004 -5.8621 5.7283 17 14 9.1524 -8.6043 5.5415 18 1 8.0811 -9.4678 4.9829 19 1 10.4299 -8.8836 4.8378 20 1 9.3130 -8.8885 6.9902 21 6 3.9093 -3.4534 3.5211 22 6 3.4983 -1.9889 3.3445 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -1.7197 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 6.0435 -1.1935 1.1791 33 1 6.1168 -0.9445 2.9413 34 1 5.7094 -3.5996 1.4891 35 1 7.1537 -3.0976 2.4015 36 1 5.7762 -2.9431 4.4678 37 1 5.8414 -5.4451 2.9516 38 1 7.8895 -4.5365 3.8931 39 1 7.0702 -4.5400 5.4732 40 1 10.3365 -6.0955 6.1612 41 1 3.4592 -3.8506 4.4310 42 1 3.5677 -4.0329 2.6634 43 1 3.7575 -1.4262 4.2413 44 1 2.4236 -1.9272 3.1723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575116553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:40 Heat of formation + Delta-G solvation = -79.982960 kcal Electronic energy + Delta-G solvation = -20879.845155 eV Core-core repulsion = 17830.080338 eV Total energy + Delta-G solvation = -3049.764818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34708 -39.16893 -36.69007 -36.27949 -34.69385 -32.38747 -32.05255 -29.22535 -28.15628 -27.91689 -25.27551 -24.21997 -23.39673 -22.06937 -21.09763 -19.83187 -18.61930 -18.05883 -17.07859 -16.77333 -16.60396 -15.86994 -15.68284 -15.48361 -15.22671 -14.78102 -14.63998 -14.63728 -14.14954 -13.81373 -13.56382 -13.28648 -13.19531 -12.99448 -12.92905 -12.73267 -12.67598 -12.42813 -12.27132 -12.10040 -11.97115 -11.82522 -11.67252 -11.54790 -11.52823 -11.17111 -10.67718 -10.64276 -9.68348 -9.06847 -8.23367 -6.34272 1.40656 1.41017 1.54888 1.65661 2.02100 2.39329 3.10176 3.46083 3.60345 3.77478 3.88679 3.95382 4.04320 4.09142 4.23868 4.29446 4.38038 4.55460 4.62857 4.68026 4.74124 4.74947 4.75756 4.78685 4.87286 4.89802 4.97304 5.07262 5.09541 5.15432 5.20797 5.25754 5.33460 5.37614 5.47422 5.54586 5.58392 5.63192 6.02718 6.44019 6.46946 6.72433 6.89164 7.20649 7.36921 8.88157 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049767 B = 0.003131 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.486532 B = 8940.192429 C = 9171.947034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.151 4.151 4 C -0.131 4.131 5 C 0.507 3.493 6 O -0.584 6.584 7 N -0.611 5.611 8 C 0.122 3.878 9 C -0.151 4.151 10 C 0.084 3.916 11 N -0.682 5.682 12 C 0.211 3.789 13 C -0.535 4.535 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.972 3.028 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.112 4.112 22 C 0.109 3.891 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.332 0.668 38 H -0.039 1.039 39 H -0.001 1.001 40 H 0.265 0.735 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 11.553 -7.321 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.208 4.208 4 C -0.170 4.170 5 C 0.298 3.702 6 O -0.464 6.464 7 N -0.344 5.344 8 C -0.002 4.002 9 C -0.191 4.191 10 C -0.026 4.026 11 N -0.310 5.310 12 C 0.083 3.917 13 C -0.573 4.573 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.150 4.150 22 C -0.013 4.013 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.150 0.850 38 H -0.021 1.021 39 H 0.017 0.983 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.789 11.735 -7.119 23.268 hybrid contribution 1.850 -0.567 -0.478 1.993 sum -16.939 11.168 -7.597 21.665 Atomic orbital electron populations 1.21812 0.92882 1.02573 1.02622 1.20869 0.96613 0.96062 0.96585 1.21918 1.01205 0.95941 1.01770 1.21884 0.88976 1.04485 1.01634 1.21466 0.91740 0.76242 0.80766 1.90633 1.71511 1.49682 1.34613 1.48314 1.06854 1.57229 1.22008 1.21344 0.80863 0.95524 1.02502 1.22514 1.00389 0.96831 0.99339 1.21642 0.96464 0.89318 0.95201 1.60689 1.31545 1.11576 1.27238 1.19191 0.84700 0.95669 0.92144 1.21598 1.04160 0.93180 1.38372 0.91825 1.25943 0.96195 1.02520 0.95102 1.70093 1.11891 1.34514 1.40945 0.85300 0.78138 0.79025 0.77925 1.18622 1.20496 1.20318 1.21818 0.93520 0.96387 1.03310 1.21996 0.98434 0.92963 0.87891 0.91355 0.92378 0.91749 0.92749 0.92036 0.93698 0.92696 0.86705 0.86416 0.90612 0.91147 0.91991 0.92909 0.92352 0.85049 1.02131 0.98256 0.92654 0.89371 0.91572 0.90141 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 71.98 0.66 -0.86 16 2 C -0.08 -1.34 2.57 -10.79 -0.03 -1.37 16 3 C -0.15 -2.75 8.94 71.99 0.64 -2.11 16 4 C -0.13 -1.92 3.52 29.85 0.11 -1.82 16 5 C 0.51 12.11 7.41 87.66 0.65 12.76 16 6 O -0.58 -18.71 13.38 -3.01 -0.04 -18.75 16 7 N -0.61 -14.15 2.98 -819.01 -2.44 -16.59 16 8 C 0.12 3.37 6.43 86.36 0.56 3.92 16 9 C -0.15 -4.75 5.34 30.68 0.16 -4.58 16 10 C 0.08 2.76 2.43 44.95 0.11 2.87 16 11 N -0.68 -28.29 6.24 -495.38 -3.09 -31.38 16 12 C 0.21 11.14 5.24 85.56 0.45 11.59 16 13 C -0.53 -30.37 9.32 25.60 0.24 -30.14 16 14 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 17 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 C -0.11 -2.63 5.69 30.65 0.17 -2.45 16 22 C 0.11 1.91 6.34 86.34 0.55 2.46 16 23 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 1.13 7.95 -2.39 -0.02 1.11 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 1.10 5.95 -2.39 -0.01 1.09 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 1.24 7.69 -2.39 -0.02 1.22 16 31 H 0.12 1.18 7.94 -2.39 -0.02 1.16 16 32 H 0.08 2.30 7.00 -2.39 -0.02 2.28 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.91 7.42 -2.39 -0.02 1.89 16 36 H 0.06 2.07 7.80 -2.38 -0.02 2.05 16 37 H 0.33 13.42 8.47 -89.69 -0.76 12.66 16 38 H -0.04 -2.22 7.41 -2.39 -0.02 -2.24 16 39 H 0.00 -0.04 8.05 -2.39 -0.02 -0.06 16 40 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.12 1.26 5.93 -2.38 -0.01 1.25 16 Total: -1.00 -69.26 343.77 1.67 -67.58 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.20 Total: 18.25 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.73 Total: -9.23 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.24 Total: -104.10 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.04 Total: -18.75 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.26 1.67 -67.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575116553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.399 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds